BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496059
Length=510
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59320.1 | Symbols: LTP3 | lipid transfer protein 3 | chr5:2... 732 0.0
AT5G59310.1 | Symbols: LTP4 | lipid transfer protein 4 | chr5:2... 514 3e-145
AT5G59330.1 | Symbols: | Bifunctional inhibitor/lipid-transfer... 315 4e-85
> AT5G59320.1 | Symbols: LTP3 | lipid transfer protein 3 | chr5:23928971-23929745
FORWARD LENGTH=681
Length=681
Score = 732 bits (396), Expect = 0.0
Identities = 455/484 (94%), Gaps = 2/484 (0%)
Strand=Plus/Plus
Query 1 CATATCCACCAACAAAAACACAAGCTTATAAAGCAAAAATCAACTAATTTTGTTATCAAC 60
|||||||| ||||||||||| ||||| | ||| | ||| ||||||||||||||||||| |
Sbjct 1 CATATCCAACAACAAAAACATAAGCTAAGAAAACGAAACTCAACTAATTTTGTTATCACC 60
Query 61 CAACAAGAAGAACAAACACAATGGCTTTCGCTTTGAGGTTCTTCACATGCCTTGTTTTAA 120
||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CAAAAAGAAGTTCAAACACAATGGCTTTCGCTTTGAGGTTCTTCACATGCCTTGTTTTAA 120
Query 121 CGGTGTGCATAGTTGCATCAGTCGATGCTGCAATCTCATGTGGCACAGTGGCAGGTAGCT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CGGTGTGCATAGTTGCATCAGTCGATGCTGCAATCTCATGTGGCACAGTGGCAGGTAGCT 180
Query 181 TGGCTCCATGTGCAACCTACCTATCAAAAGGTGGGTTGGTGCCACCTCCGTGTTGTGCAG 240
||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||
Sbjct 181 TGGCTCCATGTGCAACCTATCTATCAAAAGGTGGGTTGGTGCCACCTTCATGTTGTGCAG 240
Query 241 GAGTCAAAAAGTTGAACGGTATGGCTCAAACCACACCAGACCGCCAACAAGCATGCCGAT 300
||||||||| |||||| |||||||| ||||||||||||||||||||||||| ||| |||
Sbjct 241 GAGTCAAAACTTTGAACAGTATGGCTAAAACCACACCAGACCGCCAACAAGCTTGCAGAT 300
Query 301 GCATACAGTCCACTGCGAAGAGCATTTCTGGTCTCAACCCAAGTCTAGCCTCTGGCCTTC 360
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GCATCCAGTCCACTGCGAAGAGCATTTCTGGTCTCAACCCAAGTCTAGCCTCTGGCCTTC 360
Query 361 CTGGAAAGTGCGGTGTTAGCATTCCCTATCCCATCTCCATGAGCACTAACTGCAACAACA 420
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 361 CTGGAAAGTGCGGTGTTAGCATTCCATATCCAATCTCCATGAGCACTAACTGCAACAACA 420
Query 421 TCAAGTGAAATGGAAGCTTACGTCATCATTT-G-CGTTAAGAGTATGGTTTAACATAAGT 478
|||||||||||||||||||||||| || ||| | |||||||||||||||||| || ||||
Sbjct 421 TCAAGTGAAATGGAAGCTTACGTCGTCGTTTTGGCGTTAAGAGTATGGTTTACCAGAAGT 480
Query 479 ACTA 482
||||
Sbjct 481 ACTA 484
> AT5G59310.1 | Symbols: LTP4 | lipid transfer protein 4 | chr5:23925085-23925852
REVERSE LENGTH=630
Length=630
Score = 514 bits (278), Expect = 3e-145
Identities = 409/470 (87%), Gaps = 17/470 (4%)
Strand=Plus/Plus
Query 4 ATCCACCAACAAAAACACAAGCTTATAAAGCAAAAATCAACTAATTTTGTTATCAACCAA 63
||||| |||| ||||||||||| || ||| ||||| |||||||||| |||||||| ||||
Sbjct 4 ATCCAACAAC-AAAACACAAGCGTAGAAAACAAAACTCAACTAATTGTGTTATCACCCAA 62
Query 64 CA-AGAAGAACAAACACAATGGCTTTCGCTTTGAGGTTCTTCACATGCCTTGTTTTAACG 122
| |||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 63 AAGAGAAGAGCAAACACAATGGCTTTCGCTTTGAGGTTCTTCACATGCTTTGTTTTGACA 122
Query 123 GTGTGCATAGTTGCATCAGTCGATGCTGCAATCTCATGTGGCACAGTGGCAGGTAGCTTG 182
|||| ||| ||||||||||| ||||| ||||| ||||||||||||||||| ||||||||
Sbjct 123 GTGTTCATCGTTGCATCAGTGGATGCAGCAATAACATGTGGCACAGTGGCAAGTAGCTTG 182
Query 183 -GCTCCATGTGC-AACCTACCTATCAAAAGGTGGGTTGGTGCCACCTCCGTGTTGTGCAG 240
| ||||||| | | |||||||||||| |||||| |||||||||||||||| |||||||
Sbjct 183 AG-TCCATGT-CTAGGCTACCTATCAAAGGGTGGGGTGGTGCCACCTCCGTGCTGTGCAG 240
Query 241 GAGTCAAAAAGTTGAACGGTATGGCTCAAACCACACCAGACCGCCAACAAGCATGCCGAT 300
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 241 GAGTCAAAAAGTTGAACGGTATGGCTCAAACCACACCCGACCGCCAACAAGCATGCAGAT 300
Query 301 GCATACAGTCCACTGCGAAGAGCATTTCTGGTCTCAACCCAAGTCTAGCCTCTGGCCTTC 360
|| |||||||| |||| || || ||| | || ||||||||||||||||||||||
Sbjct 301 GCTTACAGTCCGCTGCAAA-AGG------GGT-T-AATCCAAGTCTAGCCTCTGGCCTTC 351
Query 361 CTGGAAAGTGCGGTGTTAGCATTCCCTATCCCATCTCCATGAGCACTAACTGCAACAACA 420
|||||||||||||||||||||| |||||||||||||||| |||||| |||||| || ||
Sbjct 352 CTGGAAAGTGCGGTGTTAGCATCCCCTATCCCATCTCCACGAGCACCAACTGCGCCACCA 411
Query 421 TCAAGTGAAATGGAAGCTTA-CGTCATCATTTGCGTTAAGAGTATGGTTT 469
||||||||| ||| | || || |||||||||| | |||||||||||||
Sbjct 412 TCAAGTGAAGTGGG-GAATAACGACATCATTTGCCTGAAGAGTATGGTTT 460
> AT5G59330.1 | Symbols: | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein | chr5:23931318-23931889
FORWARD LENGTH=424
Length=424
Score = 315 bits (170), Expect = 4e-85
Identities = 320/387 (83%), Gaps = 32/387 (8%)
Strand=Plus/Plus
Query 49 TTTGTTATCAACC--AACAAGA-AGAACAAACACAATGGCTTTCGCTTTGAGGTTCTTCA 105
||||| || |||| ||||| | ||| |||||||||||||||| ||| | ||||||||||
Sbjct 63 TTTGTAAT-AACCAAAACAAAATAGAGCAAACACAATGGCTTTGGCTCTCAGGTTCTTCA 121
Query 106 CATGCCTT-GTTTTAACGGTGTGCATAGTTGCATCAGTCGATGCTGCAATCTCATGTGGC 164
||| ||| ||||| ||||||||||||||| ||||||| ||||| | |||||||||||||
Sbjct 122 TATG-CTTCGTTTTGACGGTGTGCATAGTTTCATCAGTAGATGCAGAAATCTCATGTGGC 180
Query 165 ACAGTGGCAGGTAGCTTGGCTCCATGTG-CAACCTACCTATCAAAAGGTGGGT-TGGTGC 222
||||||| | ||| |||||||||||||| ||| |||||| ||||||||| ||| |||| |
Sbjct 181 ACAGTGGTAAGTAACTTGGCTCCATGTGCCAA-CTACCTTTCAAAAGGT-GGTGTGGTAC 238
Query 223 CACCTCCGTGTTGTGCAGGAGTCAAAAAGTTGAACGGTATGGCTCAAACCACACCAGACC 282
| || |||||||| |||||| |||||||||||||| ||||| | |
Sbjct 239 CGGATCTGTGTTGTGAAGGAGTTGAAAAGTTGAACGGTGTGGCT----------C--A-- 284
Query 283 GCCAACAAGCATGCCGATGCATACAGTCCACTGCGAAGAGCATTTCTGGTCTCAACCCAA 342
||| ||||||||||| ||||||||| ||| ||| |||||||||||||||||||||
Sbjct 285 ---AAC---CATGCCGATGCCTACAGTCCATTGCAAAGGGCATTTCTGGTCTCAACCCAA 338
Query 343 GTCTAGCCTCTGGCCTTCCTGGAA-AGTGCGGTGTTAGCATTCCCTATCCCATCTCCATG 401
||||||||||||| ||||||| || |||||||||||||||||||||||||||| ||| ||
Sbjct 339 GTCTAGCCTCTGGTCTTCCTG-AAGAGTGCGGTGTTAGCATTCCCTATCCCATTTCCTTG 397
Query 402 AGCACTAACTGCAACAACATCAAGTGA 428
|||||||||||| ||||| || |||||
Sbjct 398 AGCACTAACTGCGACAACGTCGAGTGA 424
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24363561295
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5