BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496062
Length=1362
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59350.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1496 0.0
> AT5G59350.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast
hits to 1807 proteins in 277 species: Archae - 0; Bacteria
- 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses -
0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:23940782-23942213
FORWARD LENGTH=1432
Length=1432
Score = 1496 bits (810), Expect = 0.0
Identities = 1093/1217 (90%), Gaps = 69/1217 (6%)
Strand=Plus/Plus
Query 191 TTCACACATTTAGGTTTTTCTCAATCGTT--ATATATGGTAACCAAGTCTTATTCCATTC 248
||||| |||||| ||||||||||||| || ||||||||||||||| |||||||||||||
Sbjct 212 TTCACGCATTTACGTTTTTCTCAATCTTTACATATATGGTAACCAACTCTTATTCCATTC 271
Query 249 CTCTGTAATTCACACAAATTCCTTG-CCAAAATAAGGttttttttttttttttttttAAT 307
|||||||| ||||||||||||| || || ||| || || |||||| |||| ||
Sbjct 272 CTCTGTAACTCACACAAATTCC-TGTCC-AAA-AA-------TTAGTTTTTTCTTTTCAT 321
Query 308 GTGATGTGAGAATTTGGGTGAAGAGAAAGATGAAGACTATTAGTGGATTAGGTATTGGTT 367
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
Sbjct 322 GTGATGTGAGAATTTGGGTTACGAGAAAGATGAAGACTATTAGTGGATTAGGTATTGGGT 381
Query 368 TGAGTTT-A-G--T--GTTTCTTCTACTAGCACTTGTTGCAGAAGTCTATTACCTTCTGA 421
| ||||| | | | |||||||||| |||||||||||| ||||||||| || ||||| |
Sbjct 382 TAAGTTTAATGTTTGGGTTTCTTCTATTAGCACTTGTTGGAGAAGTCTACTATCTTCTAA 441
Query 422 GATGgaagaagcacaagaagagagtcacaagccaagcgagtgaagaagagaaagaagaag 481
|||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 442 GATGTAAGAAGCACAAGAAGAGAGTCATAAGCCAAGAGAGTGAAGAAGAGAAAGAAGAAG 501
Query 482 aagaaC--C-AAACGGATACGCTAAAGAACTTATCCAGCTCTTCTGCTTCAAAAAGCCTC 538
|| ||| | ||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 502 AACAACAACAAAACGGATACGCTAAAGAACTAATCCAGCTCTTCTGCTTCAAAAAACCTC 561
Query 539 AATCTCTGCAGCAAAACAATGGAGGAAGAGAAGGTGAAATCTCAATGAATCAAGATGGGA 598
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 562 AATCTCTGCAGCAAAACAATGGAGGAAGAGAAGGTGAAGTCTCAATGAATGAAGATGGGA 621
Query 599 ATCCAGATTTGGAACTTGGGTTGATGAAACACTTGAATGGAGGAGATCTAGGGTTTGAAG 658
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 622 ATCCAGATTTAGAACTTGGGTTGATGAAACACTTGAATGGAGGAGATCTAGGGTTTGAAG 681
Query 659 CAGAGCTTATGAAGCTTCATAACCAGAGGTTTCTATTCACAATCATGGAAGAGACAAAAG 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 682 CAGAGCTTATGAAGCTTCATAACCAGAGGTTTCTATTCACAATCATGGAAGAGACAAAAG 741
Query 719 CAGATTTGGAATCTGATGATGGTAGCAAATCAAGATTAGGTTCAAGATCAAGAAGAAGAA 778
|||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||
Sbjct 742 CAGATTTGGAATCTGAAGATGGGGGTAAATCAAGATTAGGTTCAAGATCAAGAAGAAGAA 801
Query 779 GCTTGAGTGATGTTCCTAATGACTGTAATACCCCTGGATTCACTCCATTGGCTTCTCCAA 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 802 GCTTGAGTGATGTTCCTAATGACTGTAATACCCCTGGATTCACTCCATTGGCTTCTCC-- 859
Query 839 CTACACTAAAGTC-T--TCTCCTTTGGAGTCTTATCCACACCATGGATTCAATCCTCTGT 895
|| | |||||| | |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 860 -TA-A--AAAGTCATCATCTCCTCTGGAGTCTTATCCACACCATGGATTCAATCCTCTGT 915
Query 896 TTGAATCAGACGGTGAGCTTGAGTTTAACAAGTTTTTCAGGTCGTCTTCTTCACCTCCAC 955
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 916 TTGAGTCAGACGGTGAGCTTGAGTTTAACAAGTTTTTCAGGTCCTCTTCTTCACCTCCAC 975
Query 956 CGAAGTTTAAGTTCAtgagagatgctgaagagaagctaaggaagagattgattgaagaag 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 976 CGAAGTTTAAGTTCATGAGAGATGCTGAAGAGAAGCTAAGGAAGAGATTGATTGAAGAAG 1035
Query 1016 ccagaagaagagaagGGTTAGCTTCGGTTGTAACACAAGGTTCGTTTTTGAAGTTCATGA 1075
||| |||||||||| | || || |||||||| ||||||||||| | ||||| ||||
Sbjct 1036 CCAAAAGAAGAGAAC--T---CT-CGATTGTAACAGAAGGTTCGTTTCTCAAGTTTATGA 1089
Query 1076 ATCCTGCAATGAACAGAGAGAAGAAACAGAGTATTCAAGAATCTGATGAAACGGTGTCGT 1135
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1090 ATCCTGCGATGAACAGAGAGAAGAAACAGAGTATTCAAGAATGTGATGAAACGGTGTCGT 1149
Query 1136 TTTCTCCTTCTTCTTC---ATCAGGTACAACAA--A----TCTTAGAACGTTAGTGGTTG 1186
|||||||||||||||| |||||||||||||| | ||||||||||||||||||||
Sbjct 1150 TTTCTCCTTCTTCTTCCTCATCAGGTACAACAATTACAAATCTTAGAACGTTAGTGGTTG 1209
Query 1187 tttagttttagcatctct-t---ttta-------a-ttttt------ggttgaaatttt- 1227
|||||| ||||||||||| | |||| | ||||| ||||||| ||||
Sbjct 1210 TTTAGTATTAGCATCTCTGTGGCTTTACTCTTTTAATTTTTATTTTTGGTTGAATTTTTG 1269
Query 1228 tttc-aagaatttcaattttatttGTGTGAAAATTCTATCTTTCCTTTCTCTCGTTCTTG 1286
|||| || |||||||||| |||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1270 TTTCCAAAAATTTCAATTATATT-GTGTGAAAATTCTATCTTTCCTTTCTCTCATTCTTG 1328
Query 1287 TTTTTTGGGAATGATTTTCTTCTGTACGTATGAATCTGAAAAATTT-GCAGATGCTTGTT 1345
|| ||| |||||||||| ||||||||||||| ||||||||| ||| |||||||||||||
Sbjct 1329 TTATTTAGGAATGATTT-CTTCTGTACGTATCAATCTGAAATTTTTTGCAGATGCTTGTT 1387
Query 1346 TTAATTTCGTCTAAGAA 1362
|| |||||||||||||
Sbjct 1388 TTGTTTTCGTCTAAGAA 1404
Score = 204 bits (110), Expect = 2e-51
Identities = 168/193 (87%), Gaps = 15/193 (8%)
Strand=Plus/Plus
Query 1 AAGTATAACAAAGAACCCAACTTGTGAACCTAAATTGCTTTGAAAGAGA-AGTTCTTTTC 59
||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||
Sbjct 1 AAGTATAACAAAGAACCCAACTTGTGAACCTAAATTGCTGTGAAAGAGATCGTTCTTCTC 60
Query 60 TCTGTTTCACTTAAAATAAGATAGCACaaaaaaaaaaaaaaaaaaaaaaaCTGTCTTTCT 119
|||||||||| | ||| | || | | | | || |||| ||||||||||| |||||||
Sbjct 61 TCTGTTTCACAT-AAA-AGGA-A--A-ACATAAGAAAAGAAAAAAAAAAA---TCTTTCT 111
Query 120 CTTT--CAATCTTAATTTCTCTGCTCACCATCAAGGCAAGTTTCCTTCTTTTGCTCCTCT 177
|||| ||||||||| || |||||||||||||||||||||||||||||||||| |||||
Sbjct 112 CTTTCACAATCTTAA-TT-TCTGCTCACCATCAAGGCAAGTTTCCTTCTTTTGATCCTC- 168
Query 178 AACAATTTCCATT 190
|||||||||||||
Sbjct 169 AACAATTTCCATT 181
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67067928120
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5