BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496063
Length=907
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59360.1 | Symbols: | unknown protein; Has 1807 Blast hits ... 1055 0.0
> AT5G59360.1 | Symbols: | unknown protein; Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink). | chr5:23945345-23946430
REVERSE LENGTH=1086
Length=1086
Score = 1055 bits (571), Expect = 0.0
Identities = 759/846 (90%), Gaps = 28/846 (3%)
Strand=Plus/Plus
Query 20 ATTTATAAATTAGAAGTCCTTCTCATTTTACTGTCTGCATGCCTTTAGCTCCCTTGTCGA 79
|||||| |||||||||||||||||||||||| | ||||||||| || ||||| |||||||
Sbjct 54 ATTTATTAATTAGAAGTCCTTCTCATTTTACGGCCTGCATGCC-TT-GCTCCTTTGTCGA 111
Query 80 TGTGGAGGTGTCGTCGCTCTTCGTTATATACCAAGCGCACACACTCACAAATATCAAAGA 139
| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 112 TTTGGAGGTGTCTTCGCTCTTTGTTATATACCAAGCGCACACACTCACAAATATCAAATA 171
Query 140 GACACTCACACAAAGATCTCAATTTCAATTTCTTTGCTCCTTATTTGCATCatatatata 199
|||| ||| |||||||| ||||||||||||| |||||||||||||||||| | |||||
Sbjct 172 CACACACACTTAAAGATCTTAATTTCAATTTCTCTGCTCCTTATTTGCATCA-A-ATATA 229
Query 200 tatatatat-atatataca-ag-cac--acatatgcatacacgtataccttaatatatat 254
| || | || ||||| ||| || ||| |||||| ||||||||||||||| ||||||||
Sbjct 230 TGTACA-ATGATATAAACACAGTCACATACATAT--ATACACGTATACCTTGATATATAT 286
Query 255 CGAGATCTT-CTTGTTGTTTCTGAT--ATCA-TAGTCATTATTTTTTCTTTTAGTA-TTA 309
||||||||| |||||||||||||| |||| ||||||||||||||||||||| | |||
Sbjct 287 CGAGATCTTGTTTGTTGTTTCTGATCGATCAGTAGTCATTATTTTTTCTTTTA-AAGTTA 345
Query 310 CTCTCGCTTTTCCTGTTTGTGATAAGATGTCAAATAATAAGATTTTTCATTTATTCTCTG 369
||||| |||||||||||||||||||||||||||| | ||||||||||||||||||| |||
Sbjct 346 CTCTCTCTTTTCCTGTTTGTGATAAGATGTCAAAGATTAAGATTTTTCATTTATTCCCTG 405
Query 370 ATGACAAAGATATCGAAGCCATGCAACAACCCGAGAGTCTCCTAGTTCCATCAAAA-CCG 428
||||||||||||| ||||| | ||||||||| |||||||||||||||||||||||| ||
Sbjct 406 ATGACAAAGATATTGAAGCAACGCAACAACCTGAGAGTCTCCTAGTTCCATCAAAATCC- 464
Query 429 GA--CTC-TGATTCATCATTATCTCCG-CATCATCAAGAAGATCAATCTAAAAGACAACA 484
|| ||| |||||||||||||||| || || || |||||| |||||||||| |||||||
Sbjct 465 GACTCTCTTGATTCATCATTATCT-CGACACCACCAAGAAAATCAATCTAACAGACAACG 523
Query 485 AAACCACCAACACCAACAACAAGATGAAGAACTAGAAAAGCTCCAAGAAGGATCGAGAGG 544
||||||||||||| |||||||||| ||||||||||||| || ||||| |||||||||||
Sbjct 524 GAACCACCAACACCGACAACAAGATCAAGAACTAGAAAATCTACAAGATGGATCGAGAGG 583
Query 545 AAAACGAAAATGGGAATGTGAGGATGGAA-ATTCTCGTGTAAAGATCCCAGAGACGCCGA 603
||||||||||||||||||| ||||| ||| | |||| |||||||||||||||||||||||
Sbjct 584 AAAACGAAAATGGGAATGTAAGGAT-GAAGAGTCTCCTGTAAAGATCCCAGAGACGCCGA 642
Query 604 TAAACTCGAACAGTGTGTGTTATTGTCCTCCTCGGCCGCCGAGAAAACCAAAAGCTATTC 663
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
Sbjct 643 GAAACTCGAACAGTGTGTGTTATTGTCCTCCTCGACCGCCGAGAAAGCCAAAAGCTATCC 702
Query 664 CGGCGATGAAACGGAGAGCCATGTGGGTAAAGAGATCGGTGGtttttttAGATGTAGCCA 723
|| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 703 CGTCCATGAAACGGAGAGGCATGTGGGTAAAGAGATCGGTGGTTTTTTTAGATGTAGCTA 762
Query 724 GAGAGGTCGAATCCATGTTTCCTCCGTCTGTTCTTGAAGATTTTAGTAAAAAGATCAAGA 783
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 763 GAGAGGTCGAATCCATGTTTCCTCCGTCTGTTCTTCAAGATTTTGGTAAAAAGATCAAGA 822
Query 784 AAGCTAGATCTTAATCGATAGTCtatatatatatatCTATCTATCCAT-GGCTTGATTTG 842
|||| |||| |||| | |||||||||| |||||| ||||||||||||| |||||||||||
Sbjct 823 AAGCGAGATTTTAACCAATAGTCTATACATATATCTCTATCTATCCATAGGCTTGATTTG 882
Query 843 TAGTTT 848
| ||||
Sbjct 883 TTGTTT 888
Score = 84.2 bits (45), Expect = 2e-15
Identities = 59/65 (91%), Gaps = 4/65 (6%)
Strand=Plus/Plus
Query 844 AGTTTATACGCTATATAAATAGACTGTTT-ATATCAAAAAGGAAAACAAAAGTTTAGGGT 902
|||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||
Sbjct 919 AGTTTATACGCTATAT---TAGTGTGTTTAATATCAAAAAGGAAAACAAAAGTTTAGGGT 975
Query 903 TTGGT 907
|||||
Sbjct 976 TTGGT 980
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44306517654
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5