BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496069
Length=1572
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59420.1 | Symbols: ORP3C | OSBP(oxysterol binding protein)-... 2514 0.0
> AT5G59420.1 | Symbols: ORP3C | OSBP(oxysterol binding protein)-related
protein 3C | chr5:23961575-23964824 FORWARD LENGTH=1731
Length=1731
Score = 2514 bits (1361), Expect = 0.0
Identities = 1510/1580 (96%), Gaps = 18/1580 (1%)
Strand=Plus/Plus
Query 3 CTTTTGTTTTAGTCTCCCTCCGCGTAGAAGAAGCTTCTCCGAGACTTGTCTCTGATTTGA 62
||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 4 CTTTT-TTTTAGTCTCCCTCCGCGT---AGAAGCTTCTCCGAGACTTGTCTCTGCTTTGA 59
Query 63 TTGAAGAAGAAGCTTGATCGAAAATTCTCTTAGATTTC-T--ATCAGGGCTTTAAAGAAG 119
|||||||||| |||||||||||||||| |||||||||| | || |||| |||| |||||
Sbjct 60 TTGAAGAAGACGCTTGATCGAAAATTCCCTTAGATTTCGTAAAT-AGGGTTTTACAGAAG 118
Query 120 GTGAGATTACATAGAGATC-G-TGTT-C--aaaaaaaaaaTGGGGAGTCCAAAGAAAAAC 174
||||||||||| ||||||| | | || | |||||||||||||| ||||||||||| |||
Sbjct 119 GTGAGATTACACAGAGATCGGAT-TTGCGAAAAAAAAAAATGGGAAGTCCAAAGAAGAAC 177
Query 175 GAGAACAAAGGCTTCTTCGCCGCCATGACTTCTGGCTTCTCCATGTTCGGTAGCGCCATG 234
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 178 GAGAACAAAGGCTTCTTCGCCGCCATGACTTCTGGCTTCTCCATGTTCGGTACCGCCGTG 237
Query 235 TCGAGATCTGTCAACGG-GTTGCAAGGTAATGAAGGAGTTGAGGTTATAAATCCAGAAGG 293
|||||||| || ||||| | ||||||||||||||||||||||||| ||||||||||||||
Sbjct 238 TCGAGATCCGTTAACGGCG-TGCAAGGTAATGAAGGAGTTGAGGTCATAAATCCAGAAGG 296
Query 294 TGGCAAAGAAGATGCAGAAGAGGAAGCTCAGAAAGGACGGTGGAAGGACGAGGAACGAGA 353
|||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 297 TGGCAAGGAAGATGCTGAAGAGGAAGCTCAGAAAGGAAGGTGGAAGGACGAGGAACGAGA 356
Query 354 TAGTTACTGGAAGATGATGCAGAAATATATAGGTTCGGATATTACCTCAATGGTGACTCT 413
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 357 TAGTTACTGGAAGATGATGCAGAAATATATAGGTTCGGATATTACGTCAATGGTGACTCT 416
Query 414 TCCTGTTGTTATATTTGAGCCTATGACTATGCTCCAGAAAATGGCTGAGATAATGGAGTA 473
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 417 TCCTGTTGTTATATTTGAGCCTATGACTATGCTCCAGAAGATGGCTGAGATAATGGAGTA 476
Query 474 TTCTCACTTGTTGGATCAAGCAGATGAATGCGAGGATCCATACATGCGTTTAGTATATGC 533
|||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 477 TTCTCATTTGTTGGATCAAGCAGATGAATGCGAAGATCCATACTTGCGTTTAGTATATGC 536
Query 534 TTCATCATGGGCTGTATCTGTTTACTTTGCCTTCCAACGAACTTGGAAGCCTTTCAATCC 593
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 537 TTCATCATGGGCTATATCTGTTTACTATGCCTTCCAACGAACTTGGAAGCCTTTCAATCC 596
Query 594 TATTCTTGGTGAGACATATGAGATGGTCAACCACGGTGGGGTTTCATTTATTTCTGAGCA 653
||||||||| ||||||||||||||||||||||| |||||| |||| ||||||||||||||
Sbjct 597 TATTCTTGGGGAGACATATGAGATGGTCAACCATGGTGGGATTTCTTTTATTTCTGAGCA 656
Query 654 GGTTAGCCATCATCCCCCAATGAGTGCTGGTCATGCCGAGAACGAGCACTTCATTTACGA 713
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 GGTTAGCCATCATCCACCAATGAGTGCTGGTCATGCCGAGAACGAGCACTTCATTTACGA 716
Query 714 CATCACATCAAAGTTGAAAACTAAACTTTTGGGTAACTCTGTTGATGTTTATCCTGTTGG 773
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 717 CATCACATCAAAGTTGAAAACTAAACTTTTGGGTAACTCTGTTGATGTTTACCCTGTGGG 776
Query 774 AAGAACGCGTGTAACCCTCAAAAAAGATGGTGTGGTTCTGGATTTGGTGCCGCCTCTCAC 833
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 777 AAGAACGCGTGTAACCCTCAAGAAAGATGGTGTGGTTCTGGATTTGGTGCCGCCTCTCAC 836
Query 834 TAAGATTCACAATTTAATATTTGGACGAACCTGGGTTGACTCACCCGGGGAAATGGTCAT 893
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 837 TAAGATTCACAATCTAATATTTGGACGAACCTGGGTTGACTCACCTGGGGAAATGGTCAT 896
Query 894 GACAAATTTAACCACTGGAGACAAAGTTGTACTTTATTTCCAGCCATGTGGCTGGTTCGG 953
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 897 GACAAATTTAACCACTGGAGACAAAGTTGTGCTTTATTTCCAGCCATGTGGCTGGTTCGG 956
Query 954 TTCTGGCCGCTATGAAGTTGATGGCTACGTTTACAGCGCAGCTGAAGAACCGAAAATCAT 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 TTCTGGCCGCTATGAAGTTGATGGCTACGTTTACAGCGCAGCTGAAGAACCGAAAATCAT 1016
Query 1014 GATGACAGGAAAATGGAATGAGAAAATGAGCTACCAACCTTGTGATGCCGAAGGGGAACC 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 GATGACAGGAAAATGGAATGAGAAAATGAGCTACCAACCTTGTGATGCCGAAGGGGAACC 1076
Query 1074 CCTACCAGGCACAGAGCTGAAAGAGGTGTGGCATTTGGCTGATGTCCCCAAAAACGACAA 1133
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 CCTTCCAGGAACAGAGCTGAAAGAGGTGTGGCATTTGGCTGATGTCCCCAAAAACGACAA 1136
Query 1134 ATTTCAGTACACTCACTTTGCTCACAAGATAAACAGCTTCGACACAGCGCCTGCTAAGCT 1193
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 CTTTCAGTACACTCACTTTGCTCACAAGATAAACAGCTTCGACACAGCGCCTGCTAAGCT 1196
Query 1194 CTTGGCTTCAGACTCACGTATCCGTCCTGATAGATATGCCCTTGAGCAGGGTGACCTTTC 1253
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1197 CTTGGCTTCAGACTCACGTATCCGTCCTGATAGATATTCCCTTGAGCAGGGTGACCTTTC 1256
Query 1254 TAAAGCTGGTGCCGAGAAGCACAGCCTTGAGGAGAGGCAAAGGGCCGAAAAGAGGACCCG 1313
|||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||| |
Sbjct 1257 TAAAGCTGGTTCCGAGAAACACAGCCTTGAGGAGAGACAAAGGGCCGAAAAGAGGACCAG 1316
Query 1314 AGAGACAAAGGGACAAAAGTTCACTCCAAGATGGTTCGATCTAACGGATGAGATCACACC 1373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 AGAGACAAAGGGACAAAAGTTCACTCCAAGATGGTTCGATCTAACGGATGAGATCACACC 1376
Query 1374 TACTCCATGGGGAGATATTGAAGTATACCAATACAACGGGAAGTACACA-GAACACCGAG 1432
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1377 TACTCCATGGGGAGATATTGAAGTATACCAATACAACGGGAAGTACA-ATGAACACCGAG 1435
Query 1433 ACACATCAGAGAGCTCAAGCAGTGCCTCCAATGAAACGGACCTAAAATCGATAGAGTTTA 1492
|||| ||||||||||||| ||||||||||| ||||||||||| |||||||| |||||||
Sbjct 1436 ACACGGCAGAGAGCTCAAGTAGTGCCTCCAACGAAACGGACCTCAAATCGATCGAGTTTA 1495
Query 1493 ATCCTTGGCAATATGGTAATATATCAACCGAATGAGGTAACTCTTATAGTTTAATATGTT 1552
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||
Sbjct 1496 ATCCTTGGCAATATGGTAATATCTCAACCGAATGAAGTAACTCTTATAGTTTAATTTGTT 1555
Query 1553 ATCTCTGTATACGAATGCTG 1572
|||||| |||||||||||||
Sbjct 1556 ATCTCTATATACGAATGCTG 1575
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77610042570
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5