BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496077
Length=2087
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59450.1 | Symbols: | GRAS family transcription factor | ch... 3005 0.0
AT3G46600.1 | Symbols: | GRAS family transcription factor | ch... 712 0.0
AT5G59460.1 | Symbols: | scarecrow-like transcription factor 1... 95.3 2e-18
> AT5G59450.1 | Symbols: | GRAS family transcription factor |
chr5:23974668-23976791 FORWARD LENGTH=2124
Length=2124
Score = 3005 bits (1627), Expect = 0.0
Identities = 1927/2068 (93%), Gaps = 35/2068 (2%)
Strand=Plus/Plus
Query 30 TAAAATTTGACAAAAGCTCTCAACTTTTAAACTCTGTTtcatcatcatcatcatcatcaC 89
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 80 TAAAATTTGACAAAAGCTCTCAACTTTCAAACTCTGTTTCTTCATCATCATCATCATCAC 139
Query 90 CATGGACGCTCTTCTTCAAGTTTCAGTTGATGGGTTCAGATTTGAGAACGGATCTGGATC 149
||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 140 CATGGACGCCCTGCTTCAAGTTTCAGTTGATGGGTTTAGATTTGAGAACGGATCTGGATC 199
Query 150 TTGCTGCAAACCCAGAAACAATCTCGAATCTGGGAACAATCTCTTCCCCAATTTCCACGA 209
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 200 TTGCTGCAAACCCAGAAACAATCTCGAATCTGGGAACAATCTCTTCCCTGATTTCCACGA 259
Query 210 GACTCAGAATCAGTCTTCACCAAACGATTCACCTCCAACGGTGTGTTTGGATAACTCTCC 269
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 260 GTCTCAGAATCAGTCTTCACCAAACGATTCACCTCCAACGGTGTGTTTGGATAACTCTCC 319
Query 270 TGTTCTTAAGTACATCAATGACATGTTGATGGACGAAGAAGATTTCGTAGGTGA-ATCTC 328
|||||| |||||||||||||| |||||||||||||||||||| ||||||||| | |||||
Sbjct 320 TGTTCTGAAGTACATCAATGATATGTTGATGGACGAAGAAGACTTCGTAGGT-ATATCTC 378
Query 329 GAGACCTA-GAAGCTTTACAAGCCGCTGAGAGATCCTTCTACGAGATACTTCAACAACAA 387
| || | | ||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 379 GTGA-CGATTTAGCTTTACAAGCCGCTGAGAGATCCTTCTACGAGATAATTCAACAGCAA 437
Query 388 TCTCCAGAATCTGATCAGAACTCGAGCT-CT--TCCGATCAAAACTCCGGTGACCAAGAT 444
||||||||||||||||||||| | |||| || |||||||||||||||||||||||||||
Sbjct 438 TCTCCAGAATCTGATCAGAACACTAGCTCCTCCTCCGATCAAAACTCCGGTGACCAAGAT 497
Query 445 TTCTGTTTTCCAAGCACAACAACGAGTTTAACAGATTCATCAGCGTTGGTTTCGAATGGA 504
||||||||||| || | ||||| |||||||||||||||||||||||||| |||
Sbjct 498 TTCTGTTTTCCCAG--C-ACAAC------AACAGATTCATCAGCGTTGGTTTCGAGCGGA 548
Query 505 GAATCACAGAGAAAGTACCGTTATCGGAATGATGAAGAAGATGATCTTGAGAACAATCGG 564
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 549 GAATCACAGAGAAAGTACCGTCATCGGAATGATGAAGAAGATGATCTTGAGAACAATCGG 608
Query 565 AGAAACAAACAACCTGCGATATTTGTCTCGGAGATGGAGGAGTTAGCAGTGAAGTTCGAG 624
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 609 AGAAACAAACAACCAGCGATATTTGTCTCGGAGATGGAAGAGTTAGCAGTGAAGTTAGAA 668
Query 625 CATGTGTTGTTGGTATGCAAAACGAACCaagaagaagaagaagaagaagaaaaagaaTCA 684
|||||||||||||||||||||||||||| ||||||||||||||| |||||| ||
Sbjct 669 CATGTGTTGTTGGTATGCAAAACGAACC------AAGAAGAAGAAGAAG--AAAGAA-CA 719
Query 685 GCAATAACGAAACAGAGTCA-ACCAAACAGAGCAGGACGACCAAAAGGTTCATCGAACAA 743
| |||||||||||||||| | ||||||||||||||| || |||||||||||||||||||
Sbjct 720 GTAATAACGAAACAGAGT-ACTCCAAACAGAGCAGGAAGAGCAAAAGGTTCATCGAACAA 778
Query 744 ATCCAAGACGCAAAAAACTAATTCCGTTGATCTGCGGAGTCTGTTAACGCAATGTGCACA 803
||| |||||||| ||||||||| |||||||||| || ||||| || ||||||||||| ||
Sbjct 779 ATCAAAGACGCACAAAACTAATACCGTTGATCTACGAAGTCTCTTGACGCAATGTGCTCA 838
Query 804 AGCTGTGGCAAGCTTTGACCAAAGAAGAGCAACAGATAAACTCAAAGAGATAAGATCACA 863
|||||| || ||||||||||| |||||||| |||||||||||||| ||||||||| ||||
Sbjct 839 AGCTGTAGCGAGCTTTGACCAGAGAAGAGCTACAGATAAACTCAAGGAGATAAGAGCACA 898
Query 864 CTCTTCTAGCAATGGAGATGGAACACAAAGACTAGCTTTTTACTTTGCAGAGGCGCTCGA 923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 899 CTCTTCTAGCAATGGAGATGGAACACAAAGACTAGCTTTTTACTTTGCAGAGGCGCTTGA 958
Query 924 GGCACGTATCACCGGAAACATCTCACCGCCGGTTTCTACTCCGTTTCCTTCTAGCACGAC 983
|||||||||||| ||||||||||||||||| ||||||| |||||||||||| ||||||||
Sbjct 959 GGCACGTATCACTGGAAACATCTCACCGCCTGTTTCTAATCCGTTTCCTTCAAGCACGAC 1018
Query 984 ATCCATGGTGGACATCTTGAAGGCGTACAAGCTGTTTGTTCATACTTGTCCCATCTATGT 1043
||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1019 ATCGATGGTGGACATTTTGAAAGCGTACAAGCTGTTTGTTCATACTTGTCCCATCTATGT 1078
Query 1044 AACGGATTACTTTGCTGCGAACAAATCAATCTACGAGCTTGCTATGAAAGCAACTAAGCT 1103
||| |||||||| |||||||||||||| || ||||| |||||||||||||||||||||||
Sbjct 1079 AACTGATTACTTCGCTGCGAACAAATCGATTTACGAACTTGCTATGAAAGCAACTAAGCT 1138
Query 1104 TCACATAGTTGATTTTGGGGTTCTCTACGGCTTTCAATGGCCTTGTTTGTTACGAGCACT 1163
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1139 TCACATAGTTGATTTTGGAGTTCTCTACGGCTTTCAATGGCCTTGTTTGTTACGAGCTCT 1198
Query 1164 GTCTAAACAACCGGGCGGACCACCAATGCTCCGGGTGACTGGAATCGAGCTGCCACAAGC 1223
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1199 GTCTAAACGACCGGGCGGACCACCAATGCTTCGGGTGACTGGAATCGAGCTGCCACAAGC 1258
Query 1224 GGGTTTCCGTCCTTCAGACCGGGTTGAAGAGACTGGTCGAAGACTGAAAAGGTTCTGCGA 1283
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1259 GGGTTTTCGTCCTTCAGACCGCGTTGAAGAGACTGGTCGAAGACTGAAAAGGTTCTGCGA 1318
Query 1284 TCAGTTCAATGTCCCGTTTGAGTTCAACTTCATAGCGAAAAAATGGGAAAGTATCAGTCT 1343
|||||| ||||| || |||||||||||||||||||| ||||||||||||| |||| |||
Sbjct 1319 TCAGTTTAATGTTCCTTTTGAGTTCAACTTCATAGCCAAAAAATGGGAAACCATCACTCT 1378
Query 1344 TGATGAACTTATGATCAATCCAGAAGAGACAACGGTCGTCAATTGCATTCATCGGTTACA 1403
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 1379 TGATGAACTTATGATCAATCCAGGAGAGACAACGGTCGTCAACTGCATTCATCGGTTACA 1438
Query 1404 ATACACTCCGGATGAAACTGTGTCACTGGACTCTCCAAGAGACACGGTTCTAAAGCTATT 1463
||||||||| ||||||||||||||| | ||||||||||||||||||||||| ||||||||
Sbjct 1439 ATACACTCCTGATGAAACTGTGTCATTAGACTCTCCAAGAGACACGGTTCTGAAGCTATT 1498
Query 1464 CAGAGATATCAATCCTGACCTCTTTGTGTTTGCAGAGATTAATGGAATGTACAACTCTCC 1523
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1499 CAGAGATATCAATCCTGACCTCTTTGTGTTTGCAGAGATTAACGGAATGTACAACTCTCC 1558
Query 1524 TTTCTTCATGACGAGGTTCCGAGAAGCTCTTTTCCATTTCTCTTCACTCTTTGACATGTT 1583
||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||
Sbjct 1559 TTTCTTCATGACGAGGTTCCGAGAAGCGCTTTTTCATTACTCTTCACTCTTTGACATGTT 1618
Query 1584 TGACACCACAATACAAGCAGAGGATGAATACAAAAACAGGGCACTGTTGGAGAAAGAGTT 1643
||||||||||||||| ||||||||||| |||||||||||| |||||||||||| ||||||
Sbjct 1619 TGACACCACAATACACGCAGAGGATGAGTACAAAAACAGGTCACTGTTGGAGAGAGAGTT 1678
Query 1644 GCTTGTGAGAGACGCGATGAGCGTGATTTCCTGCGAAGGCGCTGAGCGTTTTGCGAGGCC 1703
||||||||||||||||||||||||||||||||||| || || ||||| |||||||||||
Sbjct 1679 ACTTGTGAGAGACGCGATGAGCGTGATTTCCTGCGAGGGTGCAGAGCGGTTTGCGAGGCC 1738
Query 1704 TGAAACCTACAAGCAATGGCGAGTTAGGATTTTGAGAGCCGGGTTTAAGCCAGCAACTAT 1763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1739 TGAAACCTACAAGCAATGGCGAGTTAGGATTTTGAGAGCCGGGTTTAAGCCAGCAACTAT 1798
Query 1764 AAGTAAACAGATCATGAAGGAGGCTAAGGAAATCGTGAGGAAACGTTACCATAGAGATTT 1823
|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1799 TAGCAAACAGATCATGAAGGAGGCTAAGGAAATTGTGAGGAAACGTTACCATAGAGATTT 1858
Query 1824 TGTGATCGATAGCGATAACAATTGGATGCTTCAGGGATGGAAAGGAAGAGTCATCTATGC 1883
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1859 TGTGATCGATAGCGATAACAATTGGATGCTTCAAGGATGGAAAGGAAGAGTCATCTATGC 1918
Query 1884 TTTTTCTTGCTGGAAACCTGCTGAGAAGTTAACAAACAACCATGTAAACATCT-AAATAA 1942
|||||||||||||||||||||||||||||| |||||||| || ||||||||| ||| ||
Sbjct 1919 TTTTTCTTGCTGGAAACCTGCTGAGAAGTTCACAAACAATAATTTAAACATCTGAAA-AA 1977
Query 1943 TGTTACTTCTCTATTACTTCATTTTTGTTTCCCAATAGTTTTGTAGAATATGTTTGATCC 2002
||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 1978 TGTTACTTCTCAATTACATCATTTTTGTTTCCCAATGGTTTTGTAGAATATGTTTGATCC 2037
Query 2003 CATGAGTGGAATTG-ATA-TCTTTTTTCCTGCAAGTACATATTGTATTCAAC-CCTTGTT 2059
| |||||||| | | | | |||||||||||||||||||||||||||||||| ||||||
Sbjct 2038 CGTGAGTGGA-T-GCA-ACTCTTTTTTCCTGCAAGTACATATTGTATTCAAATCCTTGTG 2094
Query 2060 TAAAAGATAAATTGTTTAATCAAAGATC 2087
||| |||||||||||||||||||||||
Sbjct 2095 GAAATGATAAATTGTTTAATCAAAGATC 2122
Score = 54.7 bits (29), Expect = 4e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 1 GTTCACATGAACTTTCTCACCGCTTTCTT 29
|||||||||||||||||||||||||||||
Sbjct 1 GTTCACATGAACTTTCTCACCGCTTTCTT 29
> AT3G46600.1 | Symbols: | GRAS family transcription factor |
chr3:17157924-17159965 FORWARD LENGTH=2042
Length=2042
Score = 712 bits (385), Expect = 0.0
Identities = 990/1271 (78%), Gaps = 85/1271 (7%)
Strand=Plus/Plus
Query 772 GATCTGCGGAGTCTGTTAACGCAATGTGCACAAGCTGTGGCAAGCTTTGACCAAAGAAGA 831
||| || ||| ||| || | |||||| || ||||||||||| || |||||||| ||||||
Sbjct 746 GATATGAGGAATCTTTTGATGCAATGCGCGCAAGCTGTGGCGAGTTTTGACCAGAGAAGA 805
Query 832 GCAACAGATAAACTCAAAGAGATAAGATCACACTCTTCTAGCAATGGAGATG-GAACACA 890
|| || ||||| || ||||||||| |||||||||| || | || |||| | || ||
Sbjct 806 GCTTTTGAGAAACTGAAGGAGATAAGAGAACACTCTTCTCGCCACGGTGATGCG-ACTCA 864
Query 891 AAGACTAGCTTTTTACTTTGCAGAGGCGCTCGAGGCACGTATCACCGGAAACAT--CTCA 948
|||||| | || | ||||||| |||||||| || || ||||| || |||| ||| || |
Sbjct 865 AAGACTTGGTTATCACTTTGCTGAGGCGCTTGAAGCTCGTATTACAGGAACCATGACT-A 923
Query 949 CCGCCGGTTTCTACTCCGTTTCCTTCTAGCACG-ACATCCATGGTGGACATCTTGAAGGC 1007
| || || || | | ||||||||| | ||||| ||||||||||| ||||||||
Sbjct 924 -CACC----AATA-TCTG-CTACTTCTAGCA-GAACATCAATGGTGGACATTTTGAAGGC 975
Query 1008 GTACAAGCTG-TTTGTTCATACTTGTCCCATC-TATGTAACG-GATTACTTT-GCTGCGA 1063
||||||| | |||||||| |||| |||| | || ||| | | ||| ||| |||| |
Sbjct 976 GTACAAG-GGATTTGTTCAGGCTTGCCCCACCTTA-ATAATGTG-TTA-TTTCACTGCAA 1031
Query 1064 ACA-AATCAATCTACGAGCTTGCTAT-GAAAGCAACTA-AGCTTCACAT-AGTTGATTTT 1119
||| || ||||| | ||||||||| | |||||||| | | |||||||| | ||||||||
Sbjct 1032 ACAGAA-CAATCAATGAGCTTGCT-TCCAAAGCAACCACA-CTTCACATCA-TTGATTTT 1087
Query 1120 GGGGTTCTCTACGGCTTTCAATGGCCTTGTTTGTTACGAGCACTGTCTAAAC--AACCGG 1177
||| ||||||| || ||||||||||||||| || ||| ||| |||| |||| | |
Sbjct 1088 GGGATTCTCTATGGATTTCAATGGCCTTGTCTGATACAAGCTTTGTCAAAACGTGA-C-A 1145
Query 1178 GCGGACCACCAATGCTCCGGGTGACTGGAATCGAGCTGCCACAAG-CGGGTTTCCGTCCT 1236
|||||||||| ||||||| |||||||| |||||||| || | || | |||||||||||
Sbjct 1146 TCGGACCACCACTGCTCCGTGTGACTGGTATCGAGCTTCCTC-AGTCAGGTTTCCGTCCA 1204
Query 1237 TCAGACCGGGTTGAAGAGACTGGTCGAAGACTGAAA-AGGTTCTGCGATC-AGTTCAATG 1294
||||| ||||| |||||||| || |||||||| ||| |||||||| || | |||||||||
Sbjct 1205 TCAGAGCGGGTAGAAGAGACCGGGCGAAGACT-AAAGAGGTTCTGTGA-CAAGTTCAATG 1262
Query 1295 TCCCGTTTGAGTTCAACTTCATAGCGAAAAAATGGGA-AAGTATCAGTCTTGATGAACTT 1353
|||||||||||| || |||||||| || || ||||| || || | ||||||||| ||
Sbjct 1263 TCCCGTTTGAGTACAGTTTCATAGCCAAGAATTGGGAGAA-CATAACTCTTGATGATCTG 1321
Query 1354 ATGATCAATCCAGAAGAGACAACGGTCGTCAATTGCATTCAT-CGGTTACAATACACTCC 1412
|||||||| | |||||||| || ||||| |||| || | ||| ||||||| || ||
Sbjct 1322 GTGATCAATAGTGGCGAGACAACAGTTGTCAACTGCA-TCCTCCGGCTACAATATACACC 1380
Query 1413 GGATGAAACTGTGTCACTGGACTCTCCAAGAGACACGGTTCT-AAAGCTATTCAGAGATA 1471
|||||||| ||||| || |||| || |||||||||| ||| ||| ||||||||||| |
Sbjct 1381 TGATGAAACCGTGTCCCTCAACTCACCGAGAGACACGGCTCTGAAA-CTATTCAGAGACA 1439
Query 1472 TCAATCCTGACCTCTTTGTGTTTGCAGAGATTAATGGAA-TGTACAACTCTCCTTTCTTC 1530
|||| ||||||||||||||||||||||||||||| || | | ||||| || || ||||||
Sbjct 1440 TCAACCCTGACCTCTTTGTGTTTGCAGAGATTAACGGGACT-TACAATTCACCCTTCTTC 1498
Query 1531 ATGACGAGGTTCCGAGAAGCTCTTTTCCATTTCTCTTCACTCTTTGACATGTTTGACACC 1590
| || |||||| |||||||||| ||||||| ||| |||||||||||||||| ||| |||
Sbjct 1499 CTAACAAGGTTCAGAGAAGCTCTCTTCCATTGCTCGTCACTCTTTGACATGTATGAGACC 1558
Query 1591 ACAATA-CAAGCAGAGGATGAATACAAAAACAGGGCACTGTTGGAGAAAGAGTTGCTTGT 1649
||| || || | | || | || ||| |||| ||||| |||||| || | | |
Sbjct 1559 ACATTATCA-G-A-AG-ACGA---CAATTGCAGGACACTGGTGGAGAGGGAACTAATCAT 1611
Query 1650 GAGAGACGCGATGAGCGTGATTTCCTGCGAAGGCG-CTGAGCGTTTTGCGAGGCCTGAAA 1708
||||| || ||||| ||||| |||| ||||| | ||||||| ||||| ||||| || |
Sbjct 1612 AAGAGATGCAATGAGTGTGATAGCCTGTGAAGG-GTCTGAGCGGTTTGCAAGGCCAGAGA 1670
Query 1709 CCTACAAGCAATGGCGAG-TTAGGATTTTGAGAGCCGGGTTTA-AGCCAGC-AA-CTATA 1764
||||||||||||||| || |||||||| | ||||| || |||| | ||||| || ||| |
Sbjct 1671 CCTACAAGCAATGGC-AGGTTAGGATTCTAAGAGCAGGATTTAGA-CCAGCGAAACTA-A 1727
Query 1765 AGTAAACAGATCA-TGAAGGA-GGCTAAGGAAATCGTGAG-GAAACGTTACCATAGAGAT 1821
| |||||||| | | ||||| || ||| | || |||| ||| |||||||| | ||||
Sbjct 1728 -GCAAACAGAT-AGTAAAGGACGGGAAAG-AGATAGTGAAAGAA-CGTTACCACAAAGAT 1783
Query 1822 TTTGTGATCGATAGCGATAACAATTGGATGCTTCAGGGATGGAAAGGAAGAGTCATCTAT 1881
||||||||||| | |||||| | |||||| ||||||| ||||||||||||||| | |||
Sbjct 1784 TTTGTGATCGACAATGATAACCACTGGATGTTTCAGGGCTGGAAAGGAAGAGTCCTTTAT 1843
Query 1882 GCTTTTTCTTGCTGGAAACCTGCTGAGAAGTTAACAAA-CAAC-CATGTAAACATCTAAA 1939
||| |||||||||||||||||||| |||||| || ||| || | ||||| ||| | |
Sbjct 1844 GCTGTTTCTTGCTGGAAACCTGCTAAGAAGT-AATAAAACAGTTC-TGTAATCATTTGCA 1901
Query 1940 TAATGTTACTT-CTCT--ATTACTTCATTTTTG-TTTCCCAATAGTTTTGTAGAATA-TG 1994
|||| || || || | ||| ||| |||||| |||| || ||| |||||||| | ||
Sbjct 1902 TAATTTTGCTAGCTTTCCATTTCTTTGTTTTTGGTTTC--AA-AGTGTTGTAGAA-ACTG 1957
Query 1995 TTTGATCCCAT 2005
|||| || |||
Sbjct 1958 TTTGCTCTCAT 1968
Score = 102 bits (55), Expect = 1e-20
Identities = 177/232 (76%), Gaps = 23/232 (10%)
Strand=Plus/Plus
Query 90 CATGGACGCTCTTCTT-CAAGTTTCAGTTGATGGGTTCAGATTTGAGAACGGATCTGGAT 148
|||||| ||| || || | ||| | ||||||||||||||||| || | ||| |||||||
Sbjct 124 CATGGATGCTATT-TTGCCAGTACCCGTTGATGGGTTCAGATTCGACACCGGTTCTGGAT 182
Query 149 CTTGCTGCAAACCCAGAAACAATCTCGAATCTGGGA--A-CAATC-TCTTCCCCAATTTC 204
|||| |||||||| || |||||||| |||||||||| | ||||| | ||| | ||||
Sbjct 183 CTTGTTGCAAACCGAGGAACAATCTTGAATCTGGGACGACCAATCGT-TTCACTTGTTTC 241
Query 205 CACGAGACTCAGAATCAGTCTTCACCAAACGAT-T-C-ACC---TCCAACGGTGTGTTTG 258
|||| | || ||||| || | ||| | | | | ||| || || ||| ||||
Sbjct 242 AACGA-A-TCTGAATC--TC-AGAGCAACCCTTCTCCGACCGAGTCTAA-GGTATGTTCA 295
Query 259 GA-TAACTCTCCTGTTC-TTAAGTACATCAATGACATGTTGATGGACGAAGA 308
|| || || ||||| || |||||||||||||||||||||||||||| |||||
Sbjct 296 GATTACCT-TCCTG-TCTTTAAGTACATCAATGACATGTTGATGGAAGAAGA 345
> AT5G59460.1 | Symbols: | scarecrow-like transcription factor
11 (SCL11) | chr5:23976723-23978399 REVERSE LENGTH=872
Length=872
Score = 95.3 bits (51), Expect = 2e-18
Identities = 62/67 (93%), Gaps = 1/67 (1%)
Strand=Plus/Minus
Query 2022 TTTTTTCCTGCAAGTACATATTGTATTC-AACCCTTGTTTAAAAGATAAATTGTTTAATC 2080
|||||||||||||||||||||||||||| || |||||| ||| ||||||||||||||||
Sbjct 872 TTTTTTCCTGCAAGTACATATTGTATTCAAATCCTTGTGGAAATGATAAATTGTTTAATC 813
Query 2081 AAAGATC 2087
|||||||
Sbjct 812 AAAGATC 806
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103463323245
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5