BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496078
Length=795
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59460.1 | Symbols: | scarecrow-like transcription factor 1... 1092 0.0
> AT5G59460.1 | Symbols: | scarecrow-like transcription factor
11 (SCL11) | chr5:23976723-23978399 REVERSE LENGTH=872
Length=872
Score = 1092 bits (591), Expect = 0.0
Identities = 722/782 (92%), Gaps = 22/782 (3%)
Strand=Plus/Plus
Query 29 aaTTTGGGAAAGCTATAATGGCCAAGAGAGAGATTAGTAGCACTCTGAGAAATCTAAAGT 88
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 92 AATTTTGGAAAGCTATAATGGCGAAGAGAGAGATTAGTAGCACTCTGAGAAATCTAAAGT 151
Query 89 TTATGCAAAGGTCTGCTTTGAAAGTAGAGAAGAAGAAGGTTGATGAAGAAGAGCCTAATG 148
|||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 152 TTATGCAAAGGTCTTCTCTGAAAGTAGAGAAGAAGAAGGCTGATGAAGAAGAGCCTAATG 211
Query 149 GGAGTTTTCCTTCCC-AAGGCACTGTTGCAAAGAAGTGTGTGGTCATAACAGATTGGGAT 207
||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 212 GGAGTTTTCCTTCCCTTAGG-ACTGTTGCAAAGAAGTGTGTGGTCATAACAGATTGGGAT 270
Query 208 CCTCAGCCAGGAGCATTGTTAGGACGCATGTCATTTCAATCTTTCAATCCCTCTATCGAG 267
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 271 CCTCAGCCAGGAGCATTGTTAGGACGCATGTCTTTTCAGTCTTTCAATCCCTCTATCGAG 330
Query 268 AAATTGA-ATGAAGAGGCAATAAACGGTGGAAATCCCTCAAGCTCTAGCAGTAATGGAGG 326
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 331 AAATT-ACATGAAGAGGCAATAAACGGTGGAAATCCCTCAAGCTCTAGCAGTAATGGAGG 389
Query 327 AAAGAAGTCTTTTAGTGAACCGGAGAGTTCGAAGGTTGAGGCAAGTCGGGAAAT-GAATG 385
||| |||||||||||||||||||||||||| ||||||||| ||||| |||||| || ||
Sbjct 390 AAAAAAGTCTTTTAGTGAACCGGAGAGTTCAAAGGTTGAGCCAAGTGGGGAAACAGA-TG 448
Query 386 GTGACTTGAAAAGAAAACAGTCTGAGGTACTCTCCGAGGAACAAAACCGTCCTAACAAGT 445
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 449 GTGACTTGAAAAGAAAACAGTCTGAGGTAGTCTCCGAGGAACAAAACCGTCCTAACAAGT 508
Query 446 CCCCGAGGAG-TAGTGACAAACCATCACCGAGCAATAAAAAAGGCAATGCTTTCAAGAAA 504
|||| ||||| | ||||||||||||||||||||||||||| ||||||| ||| ||||||
Sbjct 509 CCCCAAGGAGCTT-TGACAAACCATCACCGAGCAATAAAAAGGGCAATGGTTTTAAGAAA 567
Query 505 CCCAAGAGCAAGAAGGTGGACTGGAGCGTTGTGAGGCCACCAAAACCTCAAACCAAATAG 564
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 568 CCCAAGAGCAAGAAGGTGGACTGGAGCGTTTTGAGGCCACCAAAACCTCAAACCAAATAG 627
Query 565 GGTTTAAATTAGCTAACTGCAGCAACCTATTTGCCATTAGTTTACATCGGTTCATATGTT 624
|||||||||||||||||| |||||| |||| ||| ||||||| |||||||||||||||||
Sbjct 628 GGTTTAAATTAGCTAACTACAGCAATCTATATGCTATTAGTT-ACATCGGTTCATATGTT 686
Query 625 CTAGTAGATCGTTCATTG-TGCTGTCTGTAT--TCA--C--GTGGTGTCGCAACCCGTTT 677
||||||||||||| ||| | |||||||||| ||| | ||||||| ||||||||||
Sbjct 687 CTAGTAGATCGTTTGTTGCT-CTGTCTGTATCGTCATTCCCGTGGTGTTGCAACCCGTTG 745
Query 678 GATAAATTATAGCCAAAGGTTATGAACTTT-TTTGGGTTAAA--TGCTTGTGTTATCTTC 734
||||||||||||||||| ||| |||| ||| ||||||||||| |||| ||||| |||||
Sbjct 746 GATAAATTATAGCCAAAAGTTTTGAA-TTTGTTTGGGTTAAAAGTGCTCGTGTTGTCTTC 804
Query 735 AGATCTTTGATTAGACAATTTATCTTTTAAACAAGGGTT-GAATACAATATGTACTTGCA 793
|||||||||||| |||||||||| ||| |||||| || ||||||||||||||||||||
Sbjct 805 GGATCTTTGATTAAACAATTTATCATTTCCACAAGGATTTGAATACAATATGTACTTGCA 864
Query 794 GG 795
||
Sbjct 865 GG 866
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38680293190
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5