BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496081
Length=1005
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59480.1 | Symbols: | Haloacid dehalogenase-like hydrolase ... 1524 0.0
> AT5G59480.1 | Symbols: | Haloacid dehalogenase-like hydrolase
(HAD) superfamily protein | chr5:23979390-23981590 REVERSE
LENGTH=1264
Length=1264
Score = 1524 bits (825), Expect = 0.0
Identities = 910/952 (96%), Gaps = 2/952 (0%)
Strand=Plus/Plus
Query 54 TTCTCTTTCGCGAAGTTTCATTGATCTGCAAAAAGGTTCTCACTTTCTTCATTGATTATT 113
|||||||||||||||||||||||||| | ||| ||||| |||||||| |||||||||||
Sbjct 91 TTCTCTTTCGCGAAGTTTCATTGATCAG--AAAGGGTTCCCACTTTCTCCATTGATTATT 148
Query 114 CTTTTGTTCGATTCTCCTCTGTGTAATTTGGGATCAAAATGTCGTATGAGGAAAACTTTC 173
||||||||||||||| ||| |||| |||||| ||||||||| ||||||||||| ||||||
Sbjct 149 CTTTTGTTCGATTCTTCTCGGTGTGATTTGGTATCAAAATGGCGTATGAGGAACACTTTC 208
Query 174 AGCAAACTTCTGAAGCCAAATATGATTGTCTTTTATTTGATATAGATGATACTCTGTACC 233
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 209 AGCAAACTTCTGAAGCTAAATATGATTGTCTTTTATTTGATATAGATGATACTCTTTACC 268
Query 234 CTCTCAGTTCTGGTTTGGCTATGGAAGTGAAAAAGAACATTCAAGAATATATGGTTCAGA 293
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 269 CTCTCAGTTCTGGTTTGGCCATGGAAGTGAAAAAGAACATTCAAGAATATATGGTTCAGA 328
Query 294 AACTTGGTGTTGAAGAAGATAAAGTCCAAGAACTGTGCCTTTCGCTTTATAAAATCTATG 353
|||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 329 AACTTGGTATTGAAGAAGATAAAGTCCAAGAACTTTGCCTTTCCCTTTATAAAATCTATG 388
Query 354 GAACTACTATGGCTGGTCTCAAGGCTGTGGGTTATGACTTTGATTACGACGATTTCCATC 413
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 389 GAACTACTATGGCTGGTCTCAAGGCTGTGGGTTATGACTTTGATTATGACGATTTCCATC 448
Query 414 GTTTTGTTCATGGGAGATTGCCATACTCAACACTGAAGCCTGACCCAGTTCTGAGGAATA 473
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 449 GTTTTGTTCATGGGAGATTGCCATACTCAACACTGAAGCCTGACCCAATTCTGAGGAATA 508
Query 474 TTATTCTTAGCTTGCCTATTCGGAAAGTTGTTTTCACGAATGCAGACAAGGCTCATGCAG 533
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 509 TTATTCTTAGCTTGCCTATTCGGAAAGTTGTTTTTACGAATGCAGACAAGGCTCATGCAG 568
Query 534 CCAAGGTTATTGCCAGGCTAGGCCTAGAGAACTGCTTTGAGAAAATCATATCTTTCGAGA 593
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 569 CCAAGATTATTGCCAGGCTAGGCCTAGAGGGCTGCTTTGAGAAAATCATATCTTTCGAGA 628
Query 594 CTCTGAACCCCATCACCAAAACTGAATCTCCTGTTGATACCAAAACCAGAGAAATCTTTG 653
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 629 CTCTGAACCCCATCACCAAAACTGAATCTCCTGTTGATACCAAAACCAGAGAAATCTTCG 688
Query 654 ACATAAGCAGTTACATGGCAAATCCTGACCCAAGCATTGAACTTCCAAAGACTACGGTTG 713
|||||| ||||||||||||||||||||| ||||||||||||||||||||||| | ||||
Sbjct 689 ACATAATCAGTTACATGGCAAATCCTGATTCAAGCATTGAACTTCCAAAGACTTCTGTTG 748
Query 714 TATGCAAACCTTCTGAAGGAGCATTCGAACAGGTTTTCAAGATGGCCAACATCAATCCTA 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 749 TATGCAAACCTTCTGAAGGAGCATTCGAACAGGTTTTCAAGATGGCCAACATCAATCCTA 808
Query 774 AAAAGACATTGTTCTTTGATGACAGCATCCGTAACATTCAAACTGGGAAACGTGTGGGTC 833
| |||||||||||||| |||||||||||||| ||||||||||||||||| || || ||||
Sbjct 809 AGAAGACATTGTTCTTCGATGACAGCATCCGCAACATTCAAACTGGGAAGCGCGTTGGTC 868
Query 834 TCCACACCGTATGGGTTGGGACCTCACACAGAGAGGAAGGAGTAGATATTGCATTGGAGC 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 869 TCCACACCGTATGGGTTGGGACCTCACACAGAGAGGAAGGAGTAGATATTGCATTGGAGC 928
Query 894 ACATTCACAACATACGTGAAGCTCTTCCTGAACTATGGGAAGCTGTTGATGACAAAGCCG 953
| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 929 ATATTCACAACATACGTGAAGCTCTTCCTCAACTATGGGATGCTGTTGATGACAAAGCCA 988
Query 954 AGGAGATTAGATCCAGGCAAAAGGTCGCCATTGAAACCATTGCTTAAGCAAA 1005
||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 989 AGGAGATTAGAACCAGGCAAAAGGTCGCCATTGAAACCATTGCTTAAACAAA 1040
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49229464060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5