BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496082
Length=898
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59490.1 | Symbols: | Haloacid dehalogenase-like hydrolase ... 1375 0.0
> AT5G59490.1 | Symbols: | Haloacid dehalogenase-like hydrolase
(HAD) superfamily protein | chr5:23982724-23984617 REVERSE
LENGTH=1089
Length=1089
Score = 1375 bits (744), Expect = 0.0
Identities = 849/900 (94%), Gaps = 6/900 (1%)
Strand=Plus/Plus
Query 1 TCAAATATTTTATCTTCTTCGTTTCTCTCACGTCTATTATTTTCTCTCATCttttttttt 60
||||||||||| |||||||||| |||||||||||||||||||||| ||||| |||| |||
Sbjct 1 TCAAATATTTTCTCTTCTTCGTCTCTCTCACGTCTATTATTTTCTGTCATC-TTTTATTT 59
Query 61 GAGAACCAACCAGATTTGCACTTTCTGGAGAAATGGAATTTGTGAACAGCTCTTCACCAA 120
||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 60 GAGAACC-ACCAGATTTGCAGTTTCTGGAGAAATGGAATTTGTGAACAGCTCTCCACCAA 118
Query 121 GATATGAATGTCTCCTCTTTGATTTGGATGATACTCTTTATCCTTTAAGCTCTGGTTTAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 119 GATATGAATGTCTCCTCTTTGATTTGGATGATACTCTTTATCCTTTAAGCTCTGGCTTAT 178
Query 181 CAGATGCATGCACCAACAACATTATAGAATATATGGTTGAAAAACTTGGAATAGATGAAG 240
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 179 CAGATGCATGCTCCAACAACATTATAGAATATATGGTTGAAAAGCTTGGAATAGATGAAG 238
Query 241 ATGGAGTCGTCGAACTAAACCAAATTCTTTACAAGAAATATGGAACTTCAATGGCTGGTC 300
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 239 ATGGAGTCGTTGAACTAAACCAAATTCTTTATAAGAAATATGGAACTTCAATGGCCGGTC 298
Query 301 TTAAGGAGGTAGGTTATGAATTCGATAATGACGAGTACCACAGCTATGTTCATGGTAGAT 360
|||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 299 TTAAGGCGGTAGGTTATGAATTCGATAATGACGAGTACCACCGGTATGTTCATGGTAGAT 358
Query 361 TACCTTATGAAAACCTTAAACCGGACCCGGTTCTAAGAAGTCTCCTTCTTACTCTACCTT 420
||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||
Sbjct 359 TACCTTATGAAAACCTTAAACCGGACCCGGTTCTAAGGAGTCTCCTCCTTGGTCTACCTT 418
Query 421 -GTCGAAAATTGGTTTTCTCGAATAGCGATGAAGTTCATGTGATGAAGGCTCTAAAAAGA 479
| ||||||||||| ||||||||| | ||||| |||||||||||||||||||| | ||||
Sbjct 419 TG-CGAAAATTGGTATTCTCGAATGGAGATGAGGTTCATGTGATGAAGGCTCTCACAAGA 477
Query 480 CTCGGCATTGAAGACTGTTTTGAAAGAATCATAAGTTTTGAGACCTTAAACCCTGAGATC 539
|| ||||| ||||| |||||||| |||||||||||||| ||||||||||||||||| |||
Sbjct 478 CTTGGCATCGAAGATTGTTTTGAGAGAATCATAAGTTTCGAGACCTTAAACCCTGATATC 537
Query 540 AACGAAGCTGAGGTTTCTTGCATCACAGGTCATCTTCCCGAGAATCCGGTTATTTGTAAA 599
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 538 AACGAAGCTGAGCTTTCTTGCGTCACAGGTCATCTTCCCGAGAATCCGGTTATTTGTAAA 597
Query 600 CCAACCGAGATTGCTTTCGAGAAAGCCTTCAACATTGCACAGCTCAATCCTCACAAAACC 659
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 598 CCAACTGAGATTGCTTTCGAGAAAGCCTTCGACATTGCACAGCTCAATCCTCACAAAACC 657
Query 660 TTGTTCTTCGACGACAGTATCCGGAACATCCAAACCGGGAAAGCCGTTGGTCTCCATACA 719
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 658 TTGTTCTTTGACGACAGTACCCGGAACATCCAAACCGGGAAAGCCGTTGGTCTCCATACA 717
Query 720 GTCTTGGTTGGTAAATCAGA-AAAAGTAGATGGAAGTGATTACGCGTTAGAAAGCATTCA 778
|||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||
Sbjct 718 GTCTTGGTTGGTAAATCAGAGAAAA-TAGATGGAAGCGATTACGCGTTAGAAAGCATTCA 776
Query 779 CAACATGAAAGAGGCATTTCCGGAGTTATGGTTGGAATCCAAAATCAACAACAAAGAAAC 838
|||||||||||||||||| || |||||||||| |||||||| |||||||||||||||||
Sbjct 777 CAACATGAAAGAGGCATTCCCCGAGTTATGGTCGGAATCCATTATCAACAACAAAGAAAC 836
Query 839 TGAAAGAATTGATTACGCTGCACAGGTCTCGATTGAAACTTCTGTTCAAGCTTAACTTTA 898
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 837 TGAAAGAATTGATTACGCTTCACAGATCTCGATTGAAACTTCTGTTCAAGCTTAACTTTA 896
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43854410331
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5