BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496083
Length=1438
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59500.1 | Symbols: | protein C-terminal S-isoprenylcystein... 2148 0.0
> AT5G59500.1 | Symbols: | protein C-terminal S-isoprenylcysteine
carboxyl O-methyltransferases | chr5:23985929-23987381 FORWARD
LENGTH=1453
Length=1453
Score = 2148 bits (1163), Expect = 0.0
Identities = 1340/1423 (94%), Gaps = 22/1423 (2%)
Strand=Plus/Plus
Query 1 ATCTGTTTTCCGGTTTCGATTTCGAAACAAATGA-GAAGCTGAAAGAATTTTTCTGAATC 59
||||||||||| |||||||||||||| ||||| | |||||||||||| ||||||||||||
Sbjct 1 ATCTGTTTTCCAGTTTCGATTTCGAATCAAAT-ATGAAGCTGAAAGAGTTTTTCTGAATC 59
Query 60 TTTGTCGTTGTATCCGTTACCTGAATTCAATTCGCCATGAAAGCTGTACTTCTCTGCTCG 119
|||||| |||||||||||| |||||||| |||||||||| ||||||| ||||||||||||
Sbjct 60 TTTGTCTTTGTATCCGTTATCTGAATTCTATTCGCCATGGAAGCTGTGCTTCTCTGCTCG 119
Query 120 AAGGTTGTTCCTCGAGCGACGTCGTTGGAAGAGAACCGAAAGTTTTCGTTCAGGCATTTG 179
||| |||||||| ||||| |||||||||||| ||||| ||||||||||||||||||||||
Sbjct 120 AAGCTTGTTCCTAGAGCGGCGTCGTTGGAAGGGAACCAAAAGTTTTCGTTCAGGCATTTG 179
Query 180 AACAAACACCTTAAGTGCAATTCGCTTCGTGCTGATTCCAGAAACACTCCGTTGCTCCAA 239
||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
Sbjct 180 AACAAACACCTTAAGTGCAATTCCCTTCGTGCTGATTCCAGAGACACTCCGTTGCTCCGA 239
Query 240 AGCTTTGAAGCCATTCAGAGTCCGTCTAGCTGGAGATT-TTCTCCGTTTCCAGTGAGAAA 298
| |||||||| || |||||||||||| |||||| || | | ||||| |||||||||||
Sbjct 240 GGTTTTGAAGCGATAAAGAGTCCGTCTATCTGGAG-TTGTGCGCCGTTCCCAGTGAGAAA 298
Query 299 AGGTTCATGGGTTCCGCCCAGATGCTCGATTTCTAGCTCGACTGTTTCCGATTCCGATAA 358
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 AGGTTCATGGGTTCCACCCAGATGCTCGATTTCTAGCTCGACTGTTTCCGATTCCGATAA 358
Query 359 CCCTTTCCTTAGCCATTTTCGAACCTTCTCGTTTGGGTCAGTGGTGAAGAAAGTTCGTGA 418
||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 359 CCCTTTCCTTAGCCAATTTCGAACCTTCTCTTTTGGGTCAATGGTGAAGAAAGTTCGTGA 418
Query 419 CTTGAAAGTGAAGCCGATGGATGTCGTGAAGTTAACTCTTTTGCTATCGATTTTGACTGT 478
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 419 GTTGAAAGTGAAGCCCATGGATGTTGTGAAGTTAACTCTTTTGCTATCGATTTTGACTGT 478
Query 479 GGCTGCGAAAAAG-GTGGTGAATTTGGTCTTGGACCCATTTTTCTGGATGTATTTCAGCT 537
|||||| |||||| | ||| |||||||||||||||||| |||||||||||||| ||||
Sbjct 479 GGCTGCAAAAAAGACT-TTGACTTTGGTCTTGGACCCATTCTTCTGGATGTATTTTAGCT 537
Query 538 GGACATGGTTGTTCTGGCCTTGGTTTATCGCTGTGGGTCTTGCGGGTTATGGAATTTACT 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GGACATGGTTGTTCTGGCCTTGGTTTATCGCTGTGGGTCTTGCGGGTTATGGAATTTACT 597
Query 598 GTTTTCGTAAGCATTGGCTTGGAGAAGCCAATGCCTTTGAGCAGCTTGGTATTGTTACTT 657
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 598 GTTTCCGTAAGCATTGGCTTGGCGAAGCCAATGCCTTTGAGCAGCTTGGTATTGTAACTT 657
Query 658 CAGTCTTCACATGGCTTACACTTGTGCCTCCTGCTTATTTCAATGGTTATCTTGAAGGCT 717
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 CAGTCTTCACATGGCTAACACTTGTGCCTCCTGCTTATTTCAATGGTTATCTTGAAGGCT 717
Query 718 GGCCTTATGTGTTCTTCTTGGCGTATCATTACTTCTTTTTCTTCAATGTTAGTGTGAGAA 777
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 718 GGCCTTATGTGTTCTTCTTGGCGTATCATTACTTCTTTTTCTTCAATGTTAGCGTGAGAA 777
Query 778 AACGCCTCTATGGAGATTACTATGCTCGCACGCATGATCCCAAATGGGATGTGAACACGC 837
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 778 AACGCCTCTATGGAGATTTCTATGCTCGCACTCATGATCCCAAATGGGATGTGAACACGC 837
Query 838 CTCTGTGGTCTCGGATTTTGTTTGGTGTTGGCATCATGGTTGGACATTGGCTTGCAGCTT 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 CTCTGTGGTCTCGGATTTTGTTTGGTGTTGGCATCATGGTTGGACATTGGCTTGCAGCTT 897
Query 898 TTGAAGGGCCTGAGCTTCACCGATTACCAGGGGCTTGGGCCAATGTAGGGATATGGATTT 957
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 898 TTGAAGGGCCTGAGCTTCACCGATTACCAGGGGGTTGGGCCAATGTAGGGATATGGATTT 957
Query 958 TGATTGTGATTACAATGCTTATGCATTATGATTCAACGCTATATCTTGCTAGATATTCCG 1017
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 958 TGATTGTGATTACAATGCTTATGCATTATGATTCAACGCTATATCTTGCTAGATATTCTG 1017
Query 1018 AAAAAGTTGTTGTTCCAACGGCTGTTGTGCAATTTGGTCCTTATAGATGGGTCAGGCATC 1077
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 AAAAGGTTGTTGTTCCAACGGCTGTTGTGCAATTTGGTCCTTATAGATGGGTCAGGCATC 1077
Query 1078 CTATATATGCTTCTACTATGCTTCTTTTTGCTGCATACTGCACTGCCCTGCGTGCGCCTT 1137
| |||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1078 CGATATATGCTTCTACGATGCTTCTTTTCGCTGCATACTGCACTGCTCTGCGTGCGCCTT 1137
Query 1138 TGAGTCTGTTGTTTCTTTTAGCGGTGTGTTTGGTTTACTACAACAAGAAGGCAAAGCTGG 1197
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 1138 TGAGTCTGTTGTTTCTTTTAGCGGTTTGTTTGGTTTACTACAACAAGAAGGCAAAGATGG 1197
Query 1198 AGGAAGAATTGATGGTGGAGAGTTTCGGACAAAGCTATTCGGATTATGCTGATAAGGTTA 1257
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 AAGAAGAATTGATGGTGGAGAGTTTCGGACAAAGCTATTCGGATTATGCTGATAAGGTTA 1257
Query 1258 GGCACAGGTTCATTCCTTTTGTTTACTAGT-GCT--T-TAGAGGAACCAGTGTTGTTGTG 1313
|||||| ||||||||||||||||||||||| | | | |||||||||| ||| ||||||
Sbjct 1258 GGCACAAGTTCATTCCTTTTGTTTACTAGTAG-TGGTATAGAGGAACC--TGT-GTTGTG 1313
Query 1314 TCTAATTATCTGGTATCTATCAGTCAAACAATGTATGAATGAAGATGAGTTAAATTGTCC 1373
||||||| ||||||||||||||| |||| | |||||||||||||||||||| | |
Sbjct 1314 TCTAATTTTCTGGTATCTATCAGCCAAAGA-TGTATGAATGAAGATGAGTTC--T---C- 1366
Query 1374 CATTTTTATTGGAATGTTAGGCTTGTGAAAAGGATATGTTTTT 1416
||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1367 -ATTTTTATTGGAATGTTAGGCTTGTGAAAAGGATATGCTTTT 1408
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70883169540
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5