BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496085
Length=1252
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59520.1 | Symbols: ZIP2 | ZRT/IRT-like protein 2 | chr5:239... 1755 0.0
> AT5G59520.1 | Symbols: ZIP2 | ZRT/IRT-like protein 2 | chr5:23991253-23992798
REVERSE LENGTH=1292
Length=1292
Score = 1755 bits (950), Expect = 0.0
Identities = 1176/1278 (92%), Gaps = 44/1278 (3%)
Strand=Plus/Plus
Query 1 AAACAAAGAATAACTAAAATGGCTTTGTCTTCCAAAACCCTAAAGTCAActctcttcctc 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 19 AAACAAACAATAACTAAAATGGCTTTGTCTTCCAAAACCCTAAAGTCAACTCTCTTCTTC 78
Query 61 ctctctattctcttcctctgtttctcctTGATCCTAGCTCACGGCGGCATAGACGACGGC 120
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 79 CTCTCTATTATTTTCCTCTGTTTCTCCTTGATCCTAGCTCACGGCGGCATAGACGACGGC 138
Query 121 GAC---GAAGAGGAGACCAACCAGCCACCT-------CCGG-----CCACCGTCGTAAAT 165
||| |||||||||||||||||||||||| |||| |||||||||| |||
Sbjct 139 GACGAAGAAGAGGAGACCAACCAGCCACCTCCGGCCACCGGAACAACCACCGTCGTGAAT 198
Query 166 CTCCGATCGAAAAGCTTGGTGCTTGTGAAGATCTACTGTATTATAATACTCTTCTTTAGC 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 199 CTCCGATCGAAAAGCTTGGTGCTTGTGAAGATCTACTGTATTATAATACTCTTCTTTAGC 258
Query 226 ACATTCGTAGCCGGAATTTCACCTTACTTTTACCGATGGAACGAGTCGTTTCTCCTCCTC 285
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 259 ACATTCTTAGCCGGAGTTTCACCTTACTTTTACCGATGGAACGAGTCGTTTCTCCTCCTC 318
Query 286 GGAACTCAATTCTCCGGCGGTATATTCCTAGCCACCGCTCTAATCCATTTCCTCAGCGAC 345
||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||
Sbjct 319 GGAACTCAATTCTCCGGTGGTATATTCCTCGCGACCGCTCTAATCCATTTCCTCAGCGAC 378
Query 346 GCTAACGAGACATTCAG-GGGATTAAAACACAAAGAGTACCCTTACGCCTTCATGTTAGC 404
||||||||||| ||| | ||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 379 GCTAACGAGACTTTCCGAGGG-TTAAAACACAAAGAGTATCCTTACGCCTTCATGTTAGC 437
Query 405 AGCCGCTGGATATTGCCTTACAATGCTCGCAGATGTGGCGGTTGCGTTCGTAGCAGTTGG 464
||||||||||||||||||||||||||| |||||||||||||||||||| ||||| | |||
Sbjct 438 AGCCGCTGGATATTGCCTTACAATGCTGGCAGATGTGGCGGTTGCGTTTGTAGCGGCTGG 497
Query 465 GAGTAGTAACAACCACGGCGGAGCTAGCGTCGTCGGAGAGTCGAGGGTGGATGATGAAGC 524
||||| ||||||||||| |||||||||||||| | ||||||||||| ||||||||| |
Sbjct 498 GAGTAATAACAACCACGTCGGAGCTAGCGTCG--G-AGAGTCGAGGGAGGATGATGACGT 554
Query 525 GGCAGTGAAAGAGGAAGGACGTCGTGAGATAAAGAGTGGTGTGGATGTGAGTCAAGCGCT 584
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 555 GGCAGTGAAAGAGGAAGGACGTCGTGAGATAAAGAGTGGTGTTGATGTGAGTCAAGCGCT 614
Query 585 TATACGAACGAGTGGATTTGGAGACACAGCGTTGCTGATTTTTGCACTTTGTTTTCACTC 644
||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 615 TATACGAACTAGTGGATTTGGAGACACAGCTTTGCTGATTTTTGCTCTTTGTTTTCACTC 674
Query 645 CATCTTTGAGGGAATCGCCATTGGTCTCTCAGACACTAAAAGCGACTCTTGGAGAAACCT 704
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 675 CATCTTTGAGGGAATCGCCATTGGTCTCTCAGACACTAAAAGCGACGCTTGGAGAAACCT 734
Query 705 ATGGACAATATCGTTGCACAAGGTCTTCGCGGCCGTAGCAATGGGAATAGCTCTCCTCAA 764
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 735 ATGGACAATATCGTTGCACAAGGTCTTTGCGGCCGTAGCAATGGGAATAGCTCTTCTCAA 794
Query 765 GCTAATCCCTAAGCGTCCATTCTTTCTCACTGTCGTCTACTCCTTCGCCTTTGGGATATC 824
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 795 GCTAATCCCTAAACGTCCATTCTTCCTCACTGTCGTCTACTCCTTCGCCTTTGGGATATC 854
Query 825 GAGTCCCATAGGTGTGGGGATTGGCATTGGCATCAATGCCACTAGCCAAGGAGCCGGTGG 884
||||||||||||||| ||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 855 GAGTCCCATAGGTGTCGGGATTGGCATAGGAATCAATGCCACTAGCCAAGGAGCTGGTGG 914
Query 885 TGACTGGACCTATGCGATCTCTATGGGCCTCGCTTGTGGAGTTTTCGTGTATGTTGCGGT 944
|||||||||||| ||||||||||||||||| || ||||||||||| ||||| ||||||||
Sbjct 915 TGACTGGACCTACGCGATCTCTATGGGCCTTGCGTGTGGAGTTTTTGTGTACGTTGCGGT 974
Query 945 TAACCATCTCATCTCGAAAGGGTATAAGCCTCGTGAGGAATGTTACTTCGACAAGCCAAT 1004
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 975 TAACCATCTCATCTCAAAAGGGTATAAGCCTCGTGAGGAATGTTACTTCGACAAGCCAAT 1034
Query 1005 CTACAAGTTTATTGCTGTCTTCCTTGGCGTTGCTATGCTCTCTGTTGTTATGATTTGGGA 1064
||||||||||||||| |||||||| || |||||| ||||||||||||| |||||||||||
Sbjct 1035 CTACAAGTTTATTGCCGTCTTCCTCGGTGTTGCTTTGCTCTCTGTTGTAATGATTTGGGA 1094
Query 1065 TTGATTTTAAGTGATATA--CTTAGTTTCAATCATTAGttttttttctttttctttCAAA 1122
|||||||| |||||||| |||||||||||| ||||||||||||| | | |||
Sbjct 1095 TTGATTTTTGGTGATATATACTTAGTTTCAATAATTAGTTTTTTTT-TC---C---CAA- 1146
Query 1123 TCTCCTT-GTTCATATTCTTCGTTTCTATTAATTTTGCAGAATTTAACAATTCAATGTAC 1181
|| |||| |||||| |||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 1147 TC-CCTTTGTTCATGTTCTTCGTTTTTATTAATTTTGCAGAATTTCACAATTCAATGTA- 1204
Query 1182 GTAAACCGTTGTGAAAAA-GAATATAAACATTTATGTATACGATAT-G-T----GAATGT 1234
| | ||||| ||||| |||| |||||||||||||||||||| | | | ||||||
Sbjct 1205 --ACA--GTTGTCAAAAAAGAATGTAAACATTTATGTATACGATGTTGATATATGAATGT 1260
Query 1235 GATGAGGCACCAAGCCAC 1252
|||||| |||||||||||
Sbjct 1261 GATGAGCCACCAAGCCAC 1278
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61545868170
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5