BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496089
Length=1367
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59550.1 | Symbols: | zinc finger (C3HC4-type RING finger) ... 2074 0.0
AT3G46620.1 | Symbols: | zinc finger (C3HC4-type RING finger) ... 547 9e-155
> AT5G59550.1 | Symbols: | zinc finger (C3HC4-type RING finger)
family protein | chr5:23998259-23999793 REVERSE LENGTH=1535
Length=1535
Score = 2074 bits (1123), Expect = 0.0
Identities = 1299/1383 (94%), Gaps = 16/1383 (1%)
Strand=Plus/Plus
Query 1 ATGCCGTCAACGCCGACGACGACGTCTACAACAACGCCGATCACGGCTTCGTATTGGTGT 60
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 149 ATGCCGTCAACGCCGACGACGCCGACTACAACAACGCCGATCACGGCTTCGTATTGGTGT 208
Query 61 TATAGCTGTACGCGTTTCGTCAGCGTTTGGGCTGATCAAGGCACAGCCACCGTCGGTGGC 120
|| |||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||
Sbjct 209 TACAGCTGTACGCGTTTCGTCAGCGTTTGGGCTGATCAAGGCACAACAACCGTCGGTAGC 268
Query 121 GTCGCTTGTCCTCACTGCGACGGCGGTTTTATCGAAGAGATTAACGATTCTTCCTCCGCC 180
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 269 GTCGCTTGCCCTCACTGCGACGGCGGTTTTATCGAACAGATTAACGATTCTTCCTCCGCC 328
Query 181 GCTACCGAATTAGCGATTCCGGCTTCTACTGAAGTAAGATCGATTAATAACAACCGTAGA 240
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 329 GCTACCGAATTAACGATTCCGGCTTCTACTGAAGTAAGATCGATCAATAACAACCGTAGA 388
Query 241 TCCGTGATTAGACGCCGGAGATCCGGTCGTCGTCCGTCGTTTAATCCGGTCATCGTACTC 300
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 389 TCCGTGATTAGACGCCGGAGATCCGGTCGTCGTCCGTCCTTTAATCCGGTCATCGTACTT 448
Query 301 CAAGGAGGCGCCGGCGAGAGAGAAGATGGAGAAGAAGGAGATGCGGCTAGAGATCGACGC 360
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 449 CAAGGAGGCGCCGGCGAGAGAGAAGAGGGAGAAGAAGGAGATGCGGCTAGAGATCGACGC 508
Query 361 GCTTTTGAGTTTTATTACGATGACGGATCCGGATCGGGTCTTAGACCGCTTCCGGATTCT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 509 GCTTTTGAGTTTTATTACGATGACGGATCCGGATCGGGTCTTAGACCGCTTCCGGATTCT 568
Query 421 GTATCTGAGATCTTGATGGGATCTGGATTTGAGCGGTTACTCGAACAGCTAAGCCAGTTC 480
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct 569 GTATCTGAGATCTTGATGGGATCTGGATTCGAGCGGTTACTTGAACAGCTAAGCCAAATC 628
Query 481 GAAGCGTCGGCCACCGGAATCGGTAGATCTGGAAATCCTCCGGCGTCGAAATCGGCGATT 540
||||||||||| || ||||| |||||||||||||| ||||||||||| ||||||||||||
Sbjct 629 GAAGCGTCGGCTACTGGAATTGGTAGATCTGGAAACCCTCCGGCGTCTAAATCGGCGATT 688
Query 541 GAGTCTTTACCTAGAGTCGAAATCTCTGATTGTCACATAGCCTCGGAGGCTAATTGCGCT 600
|||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||
Sbjct 689 GAGTCTTTACCTAGAGTCGAAATCTCGGATTGCCACATAGGCTCGGAGGCTAATTGCGCT 748
Query 601 GTTTGCACGGAGATTTTCGAGGCGGAGACGGAGGCACGTGAGATGCCGTGTAAACACCTC 660
||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 749 GTTTGCACGGAGATTTTCGAGACGGAGACGGAGGCGCGTGAGATGCCGTGTAAACACCTT 808
Query 661 TTCCACGACGATTGCATCGTGCCTTGGCTATCGATTCGAAACTCTTGCCCCGTGTGCAGA 720
|||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct 809 TTCCACGACGATTGCATCGTACCGTGGCTATCGATTCGAAACTCTTGTCCCGTGTGCAGA 868
Query 721 TTCGAGCTACCTTCAGAGCCTAATCGACGGAGCAACAACAACGAGGAGGATAACGCCGTG 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 869 TTCGAGCTACCTTCAGAGCCTAATCGACGGAGCAACAACAACGAGGAGGATAACGCCGTG 928
Query 781 GGGATGACAATTTGGAGACTCCCCGGTGGTGGATTCGCCGTCGGGAGGTTTAACGCCGCA 840
|||||||| ||||||||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct 929 GGGATGACGATTTGGAGACTTCCCGGTGGTGGATTCGCCGTAGGGAGGTTTAACGCAGCA 988
Query 841 ATGAGAGACGGAGAGAGAGTTTTACCTGTGGTGTTAACAGAAATGGACGGTGGTGGGATT 900
||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||
Sbjct 989 ATGAGAGACGGAGAGAGAGTTTTGCCAGTGGTGTTAACAGAAATGGATGGTGGTGGGATT 1048
Query 901 GGTAATAGCCAGGACGGTCCTAGACGGATCTCATGGGTTAGGTCACACGGTACACTCGAA 960
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1049 GGTAATAGCCAGGATGGTCCTAGACGGATCTCATGGGTTAGGTCACACGGTACACTCGAA 1108
Query 961 TCGGATAGCAACGGTGGTGGCTCCGGTACTGGCTCCGGCGGTAGATTGAGAAGGATGGTT 1020
|||||||| |||||| |||||| ||| | |||||||| || |||||||| |||||||||
Sbjct 1109 TCGGATAGTAACGGTACTGGCTCAGGTTCCGGCTCCGGTGGAAGATTGAGGAGGATGGTT 1168
Query 1021 CGTGGAATGGTGTCGTTAATGAGGAGAGTGAGACCAAATCGTAGCTCTTCTTCATC-T-- 1077
|||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
Sbjct 1169 CGTGGAATGGTGTCGTTAATGAGGAGAGTGAGACCAAACCGTAGCTCTTCTTCTTCATCA 1228
Query 1078 GCTGCAATTTCATCTTCTTCTGATAATCTGGATTTGAACATTGAAGTAGAATCTAGGGTT 1137
||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1229 GCTGCGATATCAACTTCTTCTGATAATCTGGATTTGAACATTGAAGTAGAATCTAGGGTT 1288
Query 1138 TTGGATAGGTCGAATTCAGTGATGAGAAGATACTTCAGGAGAAACAGAAGTAACAGAGAT 1197
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1289 TTGGATAGGTCAAATTCAGTGATGAGAAGATACTTCAGAAGAAACAGAAGTAACAGGGAT 1348
Query 1198 TCTTCTTCTTCGGTTCTTCATTGATTGAGAACTATATATAT-T-ATTTTTTGGTTTGTTC 1255
||||| ||||| |||||||||||||| |||| ||||||||| | ||||||||||||||||
Sbjct 1349 TCTTCGTCTTCAGTTCTTCATTGATTCAGAAATATATATATATTATTTTTTGGTTTGTTC 1408
Query 1256 ATTCAACAATGTAAATATAAAATTCAGAAGAAAAAGATTGGTGCTTCGTTTTCTGTTATT 1315
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 1409 ATTCAACAATGTAAATATAAGATTCAGAAGAAAAAGATTGGTGCTTCGTTTTCTATTATC 1468
Query 1316 A-T-C-A--A-TTCGA--TTATGTT---ACATCAAAATGTCTAATGTTCGTAAAGAAGTG 1364
| | | | | ||| ||||||| |||||||||||| |||||||| || |||||||
Sbjct 1469 AATTCGATTAATTCTTCCTTATGTTGTTACATCAAAATGTATAATGTTCATATAGAAGTG 1528
Query 1365 TTC 1367
|||
Sbjct 1529 TTC 1531
> AT3G46620.1 | Symbols: | zinc finger (C3HC4-type RING finger)
family protein | chr3:17178697-17180067 REVERSE LENGTH=1371
Length=1371
Score = 547 bits (296), Expect = 9e-155
Identities = 834/1082 (77%), Gaps = 84/1082 (8%)
Strand=Plus/Plus
Query 28 ACAACAACGCCGATCACGGCTTCGTATTGGTGTTATAGCTGTACGCGTTTCGTCAGCGTT 87
||||||||| | | ||| | |||||||||||||| || ||||| || ||| ||||||||
Sbjct 110 ACAACAACGACTCTAACGACGTCGTATTGGTGTTACAGTTGTACACGATTCATCAGCGTT 169
Query 88 TGGGCTGATCAAGGCACAGCCACCGTCGGTGGCGTCGCT-TGTCCTCACTGCGACGGCGG 146
|||| |||||| | || || | || | ||| ||| | |||||| | ||| |||| ||
Sbjct 170 TGGGAAGATCAA-G-AC-GCAAACG-C--TGGAGTC-TTATGTCCTTATTGCAACGGTGG 222
Query 147 TTTTATCGAAGAGATT-AACGATTCTTCCTCCGCCGCTACCGAATTAGCGATTCCGGCTT 205
|| |||||||||||| || ||||||| || | | |||| |||||||||||||
Sbjct 223 ATTCATCGAAGAGATTGAA-GATTCTT-CTAATTC-C-ACCGTCGCGGCGATTCCGGCTT 278
Query 206 CTACT---GAAGTAAGATCGATTAATAACAAC-CGTAGATCCGTGATTAGACGCCGGAGA 261
| ||| ||||| |||||| || | | ||| | |||||| | |||||||| || |||
Sbjct 279 CGACTCCGGAAGTTAGATCGGTTGAGGA-AACACATAGATCTATAATTAGACGTCGTAGA 337
Query 262 TCCGGTCGTCGTCCGTCGTTTAATCCGGTCATCG---TACTC--C-----A--AGGAGGC 309
|| ||| || |||| ||||||||||| |||| ||| | | | ||||||
Sbjct 338 TCTAATCGCCGGACGTCCTTTAATCCGGTAATCGTCTTACACGGCGGAGGAGGAGGAGGA 397
Query 310 GCCGGCGAGAGAGAAGATGGA-GAAGAA-G-GA--GATGCGGCTAGAGATCGACGCGCTT 364
||||| ||||||| || | | |||||| | || || || ||||||| ||||| ||||
Sbjct 398 GCCGGTGAGAGAGTTGA-GAACGAAGAAGGTGACGGA-GCTACTAGAGAACGACGAGCTT 455
Query 365 TTGAGTTTTATTACGATGACGGATCCGGATCGGGTCTTAGACCGCTTCCGGATTCTGTAT 424
|||||||||||||||||| ||||| || || ||||| ||||| ||||| ||||||||||
Sbjct 456 ATGAGTTTTATTACGATGATGGATCTGGTTCAGGTCTAAGACCTCTTCCTGATTCTGTAT 515
Query 425 CTGAGATCTTGATGGGATCTGGATTTGAGCGGTTACTCGAACAGCTAAGCCAGTTCGAAG 484
||||||||||||||||||||||||| || |||||||| ||||| | || ||| ||||||
Sbjct 516 CTGAGATCTTGATGGGATCTGGATTCGAACGGTTACTTGAACAATTGAGTCAGATCGAAG 575
Query 485 CGTC-GGCCACCGGAATCGGTAGATCTGGAAATCCTCCGGCGTCGAAATCGGCGATTGAG 543
|||| || || ||||||||||||||||| ||||| |||||||||||||| ||||||||
Sbjct 576 CGTCAGGTAAC-GGAATCGGTAGATCTGGGAATCCACCGGCGTCGAAATCAGCGATTGAA 634
Query 544 TCTTTACCTAGAGTCGAAATCTCTGATTGTCA--C-ATAGCCTCGGAGGCTAATTGCGCT 600
||||||||||||||||||||||| |||||||| | | ||| | || ||||||||||
Sbjct 635 TCTTTACCTAGAGTCGAAATCTCAGATTGTCATACGAAAGCA--GAAG-CTAATTGCGCC 691
Query 601 GTTTGCACGGAGATTTTCGAGGC-GGAGA-CGGAGGCACGTGAGATGCCGTGTAAACACC 658
|| || |||||| ||||||| || ||| | || ||| |||||||||||||||||||||
Sbjct 692 GTGTGTACGGAGGTTTTCGAAGCCGGA-ATCGAAGGT-CGTGAGATGCCGTGTAAACACA 749
Query 659 TCTTCCACGACGATTGCATCGTGCCTTGGCTATCGATTCGAAACTCTTGCCCCGTGTGCA 718
| || |||| ||||| || || || ||||| |||||||| || || || || ||||| |
Sbjct 750 TATTTCACGGTGATTGTATTGTTCCATGGCTTTCGATTCGGAATTCGTGTCCTGTGTGTA 809
Query 719 GATTCGAGCTACCTTCAGAGCCTAATCGA-CGGAGCAAC-AACAACGAGGAGGATAACGC 776
|||| ||| |||||||||| || |||| | ||||| || || || || | || ||
Sbjct 810 GATTTGAGTTACCTTCAGATCC-AATCCAACGGAGTAATGAAGAA-GA--AC-AT---GC 861
Query 777 CGTGGGGATGACAATTTGGAGACTCCCCGGTGGTGGATTCGCCGTCGGGAGGTTTAACGC 836
||| |||||||| ||||||||| | || |||||||| ||||| || || |||||||||||
Sbjct 862 CGTTGGGATGACGATTTGGAGATTACCTGGTGGTGGTTTCGCTGTTGGTAGGTTTAACGC 921
Query 837 CGCAATGAGAGACGGAGAGAGAGTT-TTACCTGTGGTGTTAACAGAAATGGACGGTGGTG 895
| | ||||||| || ||||| | | || || ||||| || || || ||||| |||||||
Sbjct 922 GGGAGTGAGAGAAGGTGAGAG-GATATTGCCGGTGGTATTGACGGAGATGGATGGTGGTG 980
Query 896 GGA-TTGGTAATAGCCAGGACGGTCCTAGACGGATCTCATGGGTTAG-GTCACACG-GTA 952
| | |||||| || | || || || ||| |||| || |||||||| | | || | | |
Sbjct 981 G-ACTTGGTAGTA---ATGAAGGACCGAGAAGGATATCTTGGGTTAGAG-CTCATGAG-A 1034
Query 953 CACTCG-A-ATCG-GATAGCAACGGTGGTGGCTCCGGTACTGGCTCCGGCGGTAGATTGA 1009
||| || | || | | ||| || |||||| | || |||| ||| | || ||||||||
Sbjct 1035 CAC-CGGAGAT-GAG-TAGGAATGGTGGTCGTTCTGGTAATGG-T--GG---TAGATTGA 1085
Query 1010 GAAG-GATGGTTCGTGGAATGGTGTCGTTAATGAGGAGAGTGAGACCAAATCGTAGCTCT 1068
|||| | || ||||||||||||| ||||| ||||| ||||| ||||||| |||| |||||
Sbjct 1086 GAAGAGCTG-TTCGTGGAATGGTTTCGTTTATGAGAAGAGTTAGACCAAGTCGTGGCTCT 1144
Query 1069 TC 1070
||
Sbjct 1145 TC 1146
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67318930845
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5