BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496092
Length=1339
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59570.1 | Symbols: | Homeodomain-like superfamily protein ... 1478 0.0
AT3G46640.3 | Symbols: PCL1 | Homeodomain-like superfamily prot... 324 2e-87
> AT5G59570.1 | Symbols: | Homeodomain-like superfamily protein
| chr5:24003888-24005512 FORWARD LENGTH=1451
Length=1451
Score = 1478 bits (800), Expect = 0.0
Identities = 1243/1436 (87%), Gaps = 114/1436 (8%)
Strand=Plus/Plus
Query 1 AAAACTAGGCTCTACGAATTTTCCGGTAACCTTCTCCGATCCCTGATCCGATA-TTTTCC 59
||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||
Sbjct 32 AAAACTAGGCTCTACGAATTTTCCGGTCACCTTCTCCGATCTCTGATCCGATATTTTTCC 91
Query 60 ACATGTTGTTGAGCTTCAAAGGATTTGAATCCGTTAAGAAATTTGTGAAAACGAAGAGAG 119
|||||||||||||||| |||||||||||| |||||| |||| || ||||||||||||| |
Sbjct 92 ACATGTTGTTGAGCTTTAAAGGATTTGAAACCGTTATGAAAGTTATGAAAACGAAGAGTG 151
Query 120 TGTGAAAAATGGGGAAGGAAGTTATGATGAGCGATTACGGT---GACGAC------GA-- 168
||||||| |||||||||||||||||| |||||||||||||| |||||| ||
Sbjct 152 TGTGAAACATGGGGAAGGAAGTTATGGTGAGCGATTACGGTGACGACGACGGAGAAGACG 211
Query 169 ----CGGCGGCGATGAAGATAGGGTTCCGGAATGGGAAATTGGATTACCCAACGGAGATG 224
||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 212 CCGGCGGCGGCGATGAATATAGGATTCCGGAATGGGAAATTGGTTTACCCAACGGAGATG 271
Query 225 ATTTGACTCCTTTATCTCAATCTCTAGTCCCGTCGATTCTCGCGTTAGCTTTTAGCATAA 284
|||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||| |
Sbjct 272 ATTTGACTCCGTTATCTCAATATCTAGTCCCGTCGATTCTCGCGTTAGCTTTCAGCATGA 331
Query 285 TCCCAGAACGGAGCCGTACGATTCACGACGTCAATCGCGCGTCGCAAACCACGCTCTCTT 344
|||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 332 TCCCAGAACGAAGCCGTACAATTCACGACGTCAATCGCGCGTCGCAAATCACGCTCTCTT 391
Query 345 CGTTGCGCAGCAGTGCCAATGCTTCGTCTGTGATGGAGGAGTTCGTGGATCGAGTTGGAT 404
||||| | |||||| |||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 392 CGTTGAGAAGCAGTACCAATGCTTCGTCTGTGATGGAGGAGGTCGTGGATCGAGTTGAAT 451
Query 405 CGAGTAG-TCCAGGATCAGATCCGAAGAAACAGAAGAAATCAGATGGTGGTG-A--AGCG 460
||||| | ||||||||||||||||||||||||||||||||| |||||||||| | ||||
Sbjct 452 CGAGT-GTTCCAGGATCAGATCCGAAGAAACAGAAGAAATCGGATGGTGGTGAAGCAGCG 510
Query 461 GC------GG--T----GGCGGAGGAGGGAGATTCCGGGACTGAAGATGCGTCAGGG-AG 507
|| || | ||||||||| ||||| |||||| ||||||| ||||| ||| ||
Sbjct 511 GCGGTGGAGGATTCCACGGCGGAGGAAGGAGACTCCGGGCCTGAAGACGCGTCTGGGAAG 570
Query 508 AACATTGAAACGGCCGCGTTTAGTGTGGACACCGCAGCTACACAAGAGATTCGTTGACGT 567
|||| |||||| |||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 571 -ACATCGAAACGACCGCGTTTAGTGTGGACACCGCAGCTACACAAGAGATTTGTGGACGT 629
Query 568 TGTGGCTCATCTAGGGATTAAAAACGCAGTGCCGAAGACGATTATGCAGCTGATGAATGT 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 630 TGTGGCTCATCTAGGGATTAAAAACGCAGTGCCGAAGACGATTATGCAGCTGATGAACGT 689
Query 628 TGAAGGACTTACTCGTGAGAACGTTGCGTCTCATTTGCAGAAATACAGGCTTTACCTTAA 687
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 690 GGAAGGACTTACTCGTGAGAACGTTGCGTCTCATTTGCAGAAATATAGGCTTTACCTTAA 749
Query 688 ACGGATTCAAGGATTGACGACGGAAGAAGATCCGTA-T--TCGTCGGATCAGCTCTTCTC 744
||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||
Sbjct 750 ACGGATTCAAGGATTGACGACGGAAGAAGATCCTTATTCGTCGTCGGATCAGCTCTTCTC 809
Query 745 TTCAACGCCGGTTCCTCCACAGTGCTTTCAAGACGACGGCGGAGGAAGTAACGGAAAATT 804
|||||||||||||||||||||| |||||| | | ||||||||||||||||||||||| ||
Sbjct 810 TTCAACGCCGGTTCCTCCACAGAGCTTTC-A-A-GACGGCGGAGGAAGTAACGGAAAGTT 866
Query 805 --GGG----GATTCCGGTT-C--C-A--G-G--------A---TATGGGAATCAGATGAG 840
||| | |||||||| | | | | | | ||||||||||| ||| |
Sbjct 867 GGGGGTTCCGGTTCCGGTTCCGTCGATGGTGCCTATTCCAGGCTATGGGAATCAAATGGG 926
Query 841 TATGCAAGGACATTATCATCAGTATCGTAGCCATGGGAATGAATCAAACCAATATATGAT 900
|||||||||| ||||||| |||||| ||| |||||| |||||||||||||||||||||||
Sbjct 927 TATGCAAGGATATTATCAACAGTATAGTAACCATGGCAATGAATCAAACCAATATATGAT 986
Query 901 GCAGCGGAATAAGTTTGGAACAATGGTGACCTCTCCTTCTG-T--TGGTGGT---G-G-- 951
||||| |||||||||||||||||||||||| | |||||||| | ||||||| | |
Sbjct 987 GCAGCAGAATAAGTTTGGAACAATGGTGACATATCCTTCTGTTGGTGGTGGTGACGTGAA 1046
Query 952 TGAC--GTGAAT-GA-C---AA-G--TA-AA-TGGATCTTA-A-AG-G-T-CT-ATAATT 993
|||| || ||| || | || | || || | | || || | || | | || | ||
Sbjct 1047 TGACAAGTAAATGGATCTTAAAGGTCTATAATTTGCTC-TACAGAGAGATACTGGTTCTT 1105
Query 994 TGATT-T-GATTCTTGTT-ACAGGTTCTTG-GCGTCGTTGTGACTTTTAATTTC-CCATG 1048
| || | | || || || || ||| || | || |||||||||||||| ||| |||||
Sbjct 1106 GGCTTATGGTTTATT-TTCCCA-CTTCATGAG-GTTGTTGTGACTTTTAA-TTCTCCATG 1161
Query 1049 TTTTCCACACAAGTCTTCATTGCCTTTGTATAGAAAATGA-CTCGAGAAAAATCAC-GCG 1106
||||||||||||||||| |||||||||||||||||||||| ||||| |||||||| | |
Sbjct 1162 TTTTCCACACAAGTCTTTATTGCCTTTGTATAGAAAATGATTTCGAG-AAAATCACTG-G 1219
Query 1107 GAAGCTCT-GTATTATTGGAGAATGAAGCCTTTCTATGAATGAATTAGTTTCCATACTGT 1165
|||||| | ||||| |||||| |||||||| |||||||||||| ||||||||| ||||||
Sbjct 1220 GAAGCT-TGGTATTGTTGGAGGATGAAGCC-TTCTATGAATGATTTAGTTTCC-TACTGT 1276
Query 1166 CTCCATTC-TTATGAGGTAGTAAAGCCTTC-TTTGCTCATCGCTTGTAGTCTTCTTAAAT 1223
|||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 1277 CTCCATTCTTTATGAGGTAATAAAGCCTTCTTTTGCTCATCGCTTGTAGTCTTCTTAAAT 1336
Query 1224 TCAAGACAGCGTCACATGTTTGTTCGGTTTTGTTAATTGTTTCTTTCTTTGGATACTCAA 1283
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||
Sbjct 1337 TCAAGACAGCGTCACATGTTTGTTCGGTTATGTTAATTGTTTCTTTCTTTGGATAATGAA 1396
Query 1284 GTATAGCATCAGGCCCTCGTGTTTCCTCATTTTGATAAATATCTCTTTCATTTATC 1339
| ||||||||||| | || ||| |||||| ||||||||||||||||||||||||||
Sbjct 1397 G-ATAGCATCAGGTC-TCATGTCTCCTCACTTTGATAAATATCTCTTTCATTTATC 1450
> AT3G46640.3 | Symbols: PCL1 | Homeodomain-like superfamily protein
| chr3:17183070-17185218 FORWARD LENGTH=1382
Length=1382
Score = 324 bits (175), Expect = 2e-87
Identities = 273/318 (86%), Gaps = 15/318 (5%)
Strand=Plus/Plus
Query 466 GGCGGAGGAGGGAGATTCCGGGACTGAAGATGC-GTCAGGGAGAACA-TTGAAACGGCCG 523
|||||| || |||||||| || ||||||||| | || |||| |||| || ||||| |||
Sbjct 556 GGCGGAAGAAGGAGATTCAGGAACTGAAGAT-CTATCTGGGAAAACACTT-AAACGACCG 613
Query 524 CGTTTAGTGTGGACACCGCAGCTACACAAGAGATTCGTTGACGTTGTGGCTCATCT-AGG 582
||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||
Sbjct 614 CGTTTAGTGTGGACACCGCAGCTACACAAGAGATTCGTTGACGTTGTAGCTCA-CTTAGG 672
Query 583 GATTAAAAACGCAGTGCCGAAGACGATTATGCAGCTGATGAATGTTGAAGGACTTA-CTC 641
||| |||||||| || |||||||||||||||||||||||||| ||||||||| ||| |||
Sbjct 673 GATCAAAAACGCTGTTCCGAAGACGATTATGCAGCTGATGAACGTTGAAGGA-TTAACTC 731
Query 642 GTGAGAACGTTGCGTCTCAT-TTGCAGAAA-TACAGGCTTTACCTTAAACGGATTCAAGG 699
|||||||||||||||||||| || || ||| || ||||||||||| ||| |||| || ||
Sbjct 732 GTGAGAACGTTGCGTCTCATCTT-CA-AAAGTATAGGCTTTACCTCAAAAGGATGCAGGG 789
Query 700 ATTGACGACGGAAGAAGATCCGTATTCGTCGGATCAGCTCTTCTCTTCAACGCCGGTTCC 759
|||||| | |||| | ||| | | | |||||| |||||||||||||||| || |||||
Sbjct 790 ATTGACTAATGAAG--G-TCCCTCTGCTTCGGATAAGCTCTTCTCTTCAACACCTGTTCC 846
Query 760 TCCACAGTGCTTTCAAGA 777
||||||| |||| |||||
Sbjct 847 TCCACAGAGCTTCCAAGA 864
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65913315585
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5