BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496095
Length=1872
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59600.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2643 0.0
> AT5G59600.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:24011000-24013025 REVERSE LENGTH=2026
Length=2026
Score = 2643 bits (1431), Expect = 0.0
Identities = 1731/1872 (92%), Gaps = 36/1872 (2%)
Strand=Plus/Plus
Query 1 TTCGTTCTCTGTCCGATAAAAATGGGAGC-TTTAATAC-T---T--C---AATCTATCAT 50
||||||||||||| ||||||| ||||||| |||| ||| | | | |||||| |||
Sbjct 2 TTCGTTCTCTGTCAGATAAAATTGGGAGCTTTTATTACTTCCGTCACTGAAATCTACCAT 61
Query 51 CAGTAATGCGGTTTTTGAT-AAGTTTTGAAGCTTTGATTCTTACCCATGAATAAATTTGC 109
||||||||||| ||||||| ||| ||||||||||||||||||| ||||||| ||| || |
Sbjct 62 CAGTAATGCGGGTTTTGATAAAG-TTTGAAGCTTTGATTCTTATCCATGAAGAAACTTAC 120
Query 110 CACCATTCCTTGTTCTGTTCGGTTATTGTCAATCGGTTCTTATGTTGAACTCATCGAAGC 169
|| | ||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 121 CATCGTTCCTAGTTCTTTTCGGTTATTATCAATCGGTTCTTATGTTGAACTCATCGAAGC 180
Query 170 CAACAGTCGAGATCGACTGCTTTGTGGAGGAATAGTGCTTCATGCTCATTTAGTGACATC 229
|||| |||||||||||||| ||||| |||||| |||||||||||||||||||||||||||
Sbjct 181 CAACGGTCGAGATCGACTGTTTTGTAGAGGAAGAGTGCTTCATGCTCATTTAGTGACATC 240
Query 230 TGGGATTGCTCGCTTGACGAGAATTGCTGCTAAGCTTGTATCTTTTTATGTTGAATGTGG 289
||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 241 TGGTATTGCTCGCTTGACGAGAATTGCAGCTAAGCTTGTAACTTTTTATGTTGAATGTGG 300
Query 290 GAAAGTTTTAGATGCGAGGAAGGTGTTCGATGAAATGCCCAAGAGAGATATTAGTGGATG 349
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GAAAGTTCTAGATGCGAGGAAGGTGTTCGATGAAATGCCCAAGAGAGATATTAGTGGATG 360
Query 350 GGTTGTCATGATTGGGGCTTGTGCTCGATATGGGTGTTACCAGGAGTCTTTGGATATCTT 409
||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||
Sbjct 361 TGTTGTCATGATTGGGGCTTGTGCTCGAAATGGGTATTACCAGGAGTCTTTGGATTTCTT 420
Query 410 CATG-GAAATGAATAAAGAAGGTTTAAAACTTGATGTTTTCATTGTTCCTAGTCTTCTTA 468
|| | |||||| | ||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 421 CA-GAGAAATGTACAAAGACGGTTTAAAACTTGATGCTTTCATTGTTCCTAGTCTTCTTA 479
Query 469 AAGCCAATCGCAATCTGCTTGATCGAGAATTTGGGAAGATGATACATTGTCTTGTGCTGA 528
|||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 480 AAGCCAGTCGCAATCTGCTTGATAGAGAATTCGGGAAGATGATACATTGTCTTGTGCTGA 539
Query 529 AGTGTTCGTTTGAGTCTGATGCTTTTATAGGTAGCTCGCTTATTGATATGTACTCGAAGT 588
||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 540 AGTTTTCGTATGAGTCTGATGCTTTTATAGTTAGCTCGCTTATTGATATGTACTCGAAGT 599
Query 589 TCGGGGAGGTAGTGAATGCGAGGAAGGTGTTCGA-TGATTTGGGTGAACAAGATTTGGTC 647
| |||||||| | ||||||||||||||||||| | ||||||||||||||| |||||||||
Sbjct 600 TTGGGGAGGTGGGGAATGCGAGGAAGGTGTTC-AGTGATTTGGGTGAACAGGATTTGGTC 658
Query 648 GTGTTCAATGCTATGATCTCTGGTTATGCTAACAATAGCCAAGCAGATGAAGCATTGAAC 707
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 659 GTGTTCAATGCTATGATCTCTGGTTATGCTAATAATAGCCAAGCAGATGAAGCATTGAAC 718
Query 708 TTGGTGAAAGATATGAAACTACTGGGAATAAAACCTGATATTATCACTTGGAATGCTCTA 767
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 719 TTGGTGAAAGATATGAAACTACTGGGAATAAAACCTGATGTTATCACTTGGAATGCTCTA 778
Query 768 ATTTCAGGGTTCTCGCATATGGGAAATGAAGAAAAAGTATCTGAGATTCTTGAGTTGATA 827
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 779 ATTTCAGGGTTCTCGCATATGAGAAATGAAGAAAAAGTATCTGAGATTCTTGAGTTGATG 838
Query 828 TGTTTGGATGGTTACATGCCCGACGTTGTGTCTTGGACTTCTATTATATCAGGCCTTGTA 887
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 839 TGTTTGGATGGTTACAAGCCCGACGTTGTGTCCTGGACTTCTATTATATCAGGCCTTGTA 898
Query 888 CATAATTTTCAGAATGAGAAAGCTTTTGATGCTTTTAAACAGATGTTAACTCATGGGTTG 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 CATAATTTTCAGAATGAGAAAGCTTTTGATGCTTTTAAACAGATGTTAACTCATGGGTTG 958
Query 948 TATCCAAACTCAGCTACGATCACAACTCTTTTGCCTGCTTGTACGACACTTGCAAATATG 1007
||||||||||| |||||||||| |||||| |||||||||||||| ||||||||| |||||
Sbjct 959 TATCCAAACTCTGCTACGATCATAACTCTATTGCCTGCTTGTACCACACTTGCATATATG 1018
Query 1008 AAGCACGGGAAGGAGATTCACGGTTACTCGGTAGTCACTGGACTAGAAGATCACGGTTTT 1067
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1019 AAGCACGGGAAGGAGATTCACGGTTACTCGGTAGTCACTGGACTAGAAGATCACGGGTTT 1078
Query 1068 GTTAGAAGTGCTTTGCTTGATATGTATGGGAAATGTGGATTCATATCAGAAGCAATGATC 1127
|||||||||||||||||||| ||||| || |||||||| |||||||||||||||||||||
Sbjct 1079 GTTAGAAGTGCTTTGCTTGACATGTACGGCAAATGTGGCTTCATATCAGAAGCAATGATC 1138
Query 1128 TTGTTTCGCAAGACGCCAAAGAAGACAACAGTAACTTTCAACTCGATGATCTTCTGTTAT 1187
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1139 TTGTTTCGCAAGACGCCAAAGAAGACAACAGTTACTTTCAACTCGATGATCTTCTGTTAT 1198
Query 1188 GCAAATCACGGGCTCTCAGACAAAGCAGTTGAGCTATTTGATCAGATGGAAGCCACGGGA 1247
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 GCGAATCACGGGCTCGCAGACAAAGCAGTTGAGCTATTTGATCAGATGGAAGCCACGGGA 1258
Query 1248 GAGAAACTCGATCACTTAACTTTCACGGCCATCCTCACAGCCTGCAGCCATGCCGGGTTA 1307
||||||||||| |||||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct 1259 GAGAAACTCGACCACTTAACATTCACGGCCATCCTCACAGCCTGCAGCCACGCAGGGTTA 1318
Query 1308 ACTGATCTTGGACAAAAGTTGTTCCATTTGATGCAAACCAAGTACAGAATCGAGCCGAGG 1367
||||||||||||||||| ||||||| ||||||||||| ||||||||| |||| ||||||
Sbjct 1319 ACTGATCTTGGACAAAATTTGTTCCTTTTGATGCAAAACAAGTACAGGATCGTGCCGAGA 1378
Query 1368 TTGGAGCATCATGCTTGTATGGTGGATCTTCTCGGACGAGCAGGGAAGCTTGTTGAGGCC 1427
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1379 TTGGAGCATTATGCTTGTATGGTGGATCTTCTCGGCCGAGCAGGGAAGCTTGTTGAGGCC 1438
Query 1428 TATGAAATGATCAAGACTATGCGAATGGAGCCGGATTTGTTTGTGTGGGGTGCTTTGTTA 1487
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 TATGAGATGATCAAGGCTATGCGAATGGAGCCGGATTTGTTTGTGTGGGGTGCTTTGTTA 1498
Query 1488 GGAGCGTGTAGGAATCACGGGAACATGGAGCTTGCAAGGATTTCAGCAAAGCACTTAGCA 1547
| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1499 GCTGCGTGTAGGAATCACGGGAACATGGAGCTTGCAAGGATTGCAGCAAAGCACTTAGCA 1558
Query 1548 GAGCTCGAACCTGAGAACTCAGGGAATGGTTTGCTTCTGACAAGTTTATATGCCGATGCT 1607
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 1559 GAGCTCGAACCTGAGAACTCAGGGAATGGTTTGCTTCTGACCAGTTTATATGCCAATGCT 1618
Query 1608 GGTAGTTGGGAAAATGTTATAAGAATGAAGAAGATGATAAAGAAGAAGAGGTTTAGAAGG 1667
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 GGTAGTTGGGAAAGTGTTGTAAGAATGAAGAAGATGATAAAGAAGAAGAGGTTTAGAAGG 1678
Query 1668 TTTCTAGGCCGCAGCTGGGTAGAAACTGTTTGATACTAAGATTCATTCTGGTTTAGATTC 1727
||||||||| |||||||||||||||||||||||| |||||| |||||||||||| ||| |
Sbjct 1679 TTTCTAGGCAGCAGCTGGGTAGAAACTGTTTGATCCTAAGACTCATTCTGGTTTTGAT-C 1737
Query 1728 TCTCAAA-CAGAATAAGA----GATAAAGA-GCTTGGA-CAACTC-CAA-CTCCGTTACA 1778
||||| | || | ||| || ||| | | | | | | || || | || | |
Sbjct 1738 A-TCAAAACCGACTTAGATTTTGAAAAAAAAGAT-GAATCGG-TCACATGCGCC-TCG-A 1792
Query 1779 GTTGTCACTTGTCACCAAACCAAGC-AAACTGACTCCAGTCAGGCCAGTTTGGTTTCTGT 1837
| |||| ||||||||| | | || ||||||| |||| | |||||||||||||||||||
Sbjct 1793 G--GTCAAGTGTCACCAAGC-A-GCTAAACTGATTCCAATAAGGCCAGTTTGGTTTCTGT 1848
Query 1838 TTAGATTGTTAC 1849
|| |||||||||
Sbjct 1849 TTGGATTGTTAC 1860
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92670206070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5