BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg496095 Length=1872 Score E Sequences producing significant alignments: (Bits) Value AT5G59600.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2643 0.0 > AT5G59600.1 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:24011000-24013025 REVERSE LENGTH=2026 Length=2026 Score = 2643 bits (1431), Expect = 0.0 Identities = 1731/1872 (92%), Gaps = 36/1872 (2%) Strand=Plus/Plus Query 1 TTCGTTCTCTGTCCGATAAAAATGGGAGC-TTTAATAC-T---T--C---AATCTATCAT 50 ||||||||||||| ||||||| ||||||| |||| ||| | | | |||||| ||| Sbjct 2 TTCGTTCTCTGTCAGATAAAATTGGGAGCTTTTATTACTTCCGTCACTGAAATCTACCAT 61 Query 51 CAGTAATGCGGTTTTTGAT-AAGTTTTGAAGCTTTGATTCTTACCCATGAATAAATTTGC 109 ||||||||||| ||||||| ||| ||||||||||||||||||| ||||||| ||| || | Sbjct 62 CAGTAATGCGGGTTTTGATAAAG-TTTGAAGCTTTGATTCTTATCCATGAAGAAACTTAC 120 Query 110 CACCATTCCTTGTTCTGTTCGGTTATTGTCAATCGGTTCTTATGTTGAACTCATCGAAGC 169 || | ||||| ||||| |||||||||| |||||||||||||||||||||||||||||||| Sbjct 121 CATCGTTCCTAGTTCTTTTCGGTTATTATCAATCGGTTCTTATGTTGAACTCATCGAAGC 180 Query 170 CAACAGTCGAGATCGACTGCTTTGTGGAGGAATAGTGCTTCATGCTCATTTAGTGACATC 229 |||| |||||||||||||| ||||| |||||| ||||||||||||||||||||||||||| Sbjct 181 CAACGGTCGAGATCGACTGTTTTGTAGAGGAAGAGTGCTTCATGCTCATTTAGTGACATC 240 Query 230 TGGGATTGCTCGCTTGACGAGAATTGCTGCTAAGCTTGTATCTTTTTATGTTGAATGTGG 289 ||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| Sbjct 241 TGGTATTGCTCGCTTGACGAGAATTGCAGCTAAGCTTGTAACTTTTTATGTTGAATGTGG 300 Query 290 GAAAGTTTTAGATGCGAGGAAGGTGTTCGATGAAATGCCCAAGAGAGATATTAGTGGATG 349 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 GAAAGTTCTAGATGCGAGGAAGGTGTTCGATGAAATGCCCAAGAGAGATATTAGTGGATG 360 Query 350 GGTTGTCATGATTGGGGCTTGTGCTCGATATGGGTGTTACCAGGAGTCTTTGGATATCTT 409 ||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||| Sbjct 361 TGTTGTCATGATTGGGGCTTGTGCTCGAAATGGGTATTACCAGGAGTCTTTGGATTTCTT 420 Query 410 CATG-GAAATGAATAAAGAAGGTTTAAAACTTGATGTTTTCATTGTTCCTAGTCTTCTTA 468 || | |||||| | ||||| |||||||||||||||| ||||||||||||||||||||||| Sbjct 421 CA-GAGAAATGTACAAAGACGGTTTAAAACTTGATGCTTTCATTGTTCCTAGTCTTCTTA 479 Query 469 AAGCCAATCGCAATCTGCTTGATCGAGAATTTGGGAAGATGATACATTGTCTTGTGCTGA 528 |||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||||| Sbjct 480 AAGCCAGTCGCAATCTGCTTGATAGAGAATTCGGGAAGATGATACATTGTCTTGTGCTGA 539 Query 529 AGTGTTCGTTTGAGTCTGATGCTTTTATAGGTAGCTCGCTTATTGATATGTACTCGAAGT 588 ||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 540 AGTTTTCGTATGAGTCTGATGCTTTTATAGTTAGCTCGCTTATTGATATGTACTCGAAGT 599 Query 589 TCGGGGAGGTAGTGAATGCGAGGAAGGTGTTCGA-TGATTTGGGTGAACAAGATTTGGTC 647 | |||||||| | ||||||||||||||||||| | ||||||||||||||| ||||||||| Sbjct 600 TTGGGGAGGTGGGGAATGCGAGGAAGGTGTTC-AGTGATTTGGGTGAACAGGATTTGGTC 658 Query 648 GTGTTCAATGCTATGATCTCTGGTTATGCTAACAATAGCCAAGCAGATGAAGCATTGAAC 707 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 659 GTGTTCAATGCTATGATCTCTGGTTATGCTAATAATAGCCAAGCAGATGAAGCATTGAAC 718 Query 708 TTGGTGAAAGATATGAAACTACTGGGAATAAAACCTGATATTATCACTTGGAATGCTCTA 767 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 719 TTGGTGAAAGATATGAAACTACTGGGAATAAAACCTGATGTTATCACTTGGAATGCTCTA 778 Query 768 ATTTCAGGGTTCTCGCATATGGGAAATGAAGAAAAAGTATCTGAGATTCTTGAGTTGATA 827 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 779 ATTTCAGGGTTCTCGCATATGAGAAATGAAGAAAAAGTATCTGAGATTCTTGAGTTGATG 838 Query 828 TGTTTGGATGGTTACATGCCCGACGTTGTGTCTTGGACTTCTATTATATCAGGCCTTGTA 887 |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| Sbjct 839 TGTTTGGATGGTTACAAGCCCGACGTTGTGTCCTGGACTTCTATTATATCAGGCCTTGTA 898 Query 888 CATAATTTTCAGAATGAGAAAGCTTTTGATGCTTTTAAACAGATGTTAACTCATGGGTTG 947 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 899 CATAATTTTCAGAATGAGAAAGCTTTTGATGCTTTTAAACAGATGTTAACTCATGGGTTG 958 Query 948 TATCCAAACTCAGCTACGATCACAACTCTTTTGCCTGCTTGTACGACACTTGCAAATATG 1007 ||||||||||| |||||||||| |||||| |||||||||||||| ||||||||| ||||| Sbjct 959 TATCCAAACTCTGCTACGATCATAACTCTATTGCCTGCTTGTACCACACTTGCATATATG 1018 Query 1008 AAGCACGGGAAGGAGATTCACGGTTACTCGGTAGTCACTGGACTAGAAGATCACGGTTTT 1067 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1019 AAGCACGGGAAGGAGATTCACGGTTACTCGGTAGTCACTGGACTAGAAGATCACGGGTTT 1078 Query 1068 GTTAGAAGTGCTTTGCTTGATATGTATGGGAAATGTGGATTCATATCAGAAGCAATGATC 1127 |||||||||||||||||||| ||||| || |||||||| ||||||||||||||||||||| Sbjct 1079 GTTAGAAGTGCTTTGCTTGACATGTACGGCAAATGTGGCTTCATATCAGAAGCAATGATC 1138 Query 1128 TTGTTTCGCAAGACGCCAAAGAAGACAACAGTAACTTTCAACTCGATGATCTTCTGTTAT 1187 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1139 TTGTTTCGCAAGACGCCAAAGAAGACAACAGTTACTTTCAACTCGATGATCTTCTGTTAT 1198 Query 1188 GCAAATCACGGGCTCTCAGACAAAGCAGTTGAGCTATTTGATCAGATGGAAGCCACGGGA 1247 || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1199 GCGAATCACGGGCTCGCAGACAAAGCAGTTGAGCTATTTGATCAGATGGAAGCCACGGGA 1258 Query 1248 GAGAAACTCGATCACTTAACTTTCACGGCCATCCTCACAGCCTGCAGCCATGCCGGGTTA 1307 ||||||||||| |||||||| ||||||||||||||||||||||||||||| || |||||| Sbjct 1259 GAGAAACTCGACCACTTAACATTCACGGCCATCCTCACAGCCTGCAGCCACGCAGGGTTA 1318 Query 1308 ACTGATCTTGGACAAAAGTTGTTCCATTTGATGCAAACCAAGTACAGAATCGAGCCGAGG 1367 ||||||||||||||||| ||||||| ||||||||||| ||||||||| |||| |||||| Sbjct 1319 ACTGATCTTGGACAAAATTTGTTCCTTTTGATGCAAAACAAGTACAGGATCGTGCCGAGA 1378 Query 1368 TTGGAGCATCATGCTTGTATGGTGGATCTTCTCGGACGAGCAGGGAAGCTTGTTGAGGCC 1427 ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1379 TTGGAGCATTATGCTTGTATGGTGGATCTTCTCGGCCGAGCAGGGAAGCTTGTTGAGGCC 1438 Query 1428 TATGAAATGATCAAGACTATGCGAATGGAGCCGGATTTGTTTGTGTGGGGTGCTTTGTTA 1487 ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1439 TATGAGATGATCAAGGCTATGCGAATGGAGCCGGATTTGTTTGTGTGGGGTGCTTTGTTA 1498 Query 1488 GGAGCGTGTAGGAATCACGGGAACATGGAGCTTGCAAGGATTTCAGCAAAGCACTTAGCA 1547 | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1499 GCTGCGTGTAGGAATCACGGGAACATGGAGCTTGCAAGGATTGCAGCAAAGCACTTAGCA 1558 Query 1548 GAGCTCGAACCTGAGAACTCAGGGAATGGTTTGCTTCTGACAAGTTTATATGCCGATGCT 1607 ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 1559 GAGCTCGAACCTGAGAACTCAGGGAATGGTTTGCTTCTGACCAGTTTATATGCCAATGCT 1618 Query 1608 GGTAGTTGGGAAAATGTTATAAGAATGAAGAAGATGATAAAGAAGAAGAGGTTTAGAAGG 1667 ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1619 GGTAGTTGGGAAAGTGTTGTAAGAATGAAGAAGATGATAAAGAAGAAGAGGTTTAGAAGG 1678 Query 1668 TTTCTAGGCCGCAGCTGGGTAGAAACTGTTTGATACTAAGATTCATTCTGGTTTAGATTC 1727 ||||||||| |||||||||||||||||||||||| |||||| |||||||||||| ||| | Sbjct 1679 TTTCTAGGCAGCAGCTGGGTAGAAACTGTTTGATCCTAAGACTCATTCTGGTTTTGAT-C 1737 Query 1728 TCTCAAA-CAGAATAAGA----GATAAAGA-GCTTGGA-CAACTC-CAA-CTCCGTTACA 1778 ||||| | || | ||| || ||| | | | | | | || || | || | | Sbjct 1738 A-TCAAAACCGACTTAGATTTTGAAAAAAAAGAT-GAATCGG-TCACATGCGCC-TCG-A 1792 Query 1779 GTTGTCACTTGTCACCAAACCAAGC-AAACTGACTCCAGTCAGGCCAGTTTGGTTTCTGT 1837 | |||| ||||||||| | | || ||||||| |||| | ||||||||||||||||||| Sbjct 1793 G--GTCAAGTGTCACCAAGC-A-GCTAAACTGATTCCAATAAGGCCAGTTTGGTTTCTGT 1848 Query 1838 TTAGATTGTTAC 1849 || ||||||||| Sbjct 1849 TTGGATTGTTAC 1860 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 92670206070 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5