BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496096
Length=850
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59610.1 | Symbols: | Chaperone DnaJ-domain superfamily pro... 1332 0.0
> AT5G59610.1 | Symbols: | Chaperone DnaJ-domain superfamily protein
| chr5:24013165-24015071 FORWARD LENGTH=924
Length=924
Score = 1332 bits (721), Expect = 0.0
Identities = 810/851 (95%), Gaps = 14/851 (2%)
Strand=Plus/Plus
Query 1 ATGTATGCAACATCTTCGATTCTGTCTCCAACACCACAAAGTTTCTTCCTTTCTCATCAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGTATGCAACATCTTCGATTCTGTCTCCAACACCACAAAGTTTCTTCCTTTCGCATCAT 60
Query 61 CTTCCTCCAATTTCATTCCTTTATCGGATTAATTTTCTGGGATTTCCTGTAACAAGAAGT 120
|||||||||||||| |||||||||||||| ||||||||||| ||||||||||| ||||
Sbjct 61 CTTCCTCCAATTTCGTTCCTTTATCGGATAAATTTTCTGGGTTTTCCTGTAAC---AAGT 117
Query 121 TGCTGCTATGGCGGAGACATTGGTTTCGCTTCGTTCTATAAACGACGGAGTGGTATACAA 180
||||||||||| |||||||||||| |||||||||| ||||||||||||||| ||||||||
Sbjct 118 TGCTGCTATGGTGGAGACATTGGTCTCGCTTCGTTATATAAACGACGGAGTAGTATACAA 177
Query 181 AGACGGAGAAATCGAAT-TGTCGTAACCAGAGCTAGAGCCTCTCCTTACGAGATTCTTGG 239
||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||
Sbjct 178 AGACGGAGAAATCGAATCT-TCGTAACCAGAGCTAGATCCTCTCCTTACGAGATTCTTGG 236
Query 240 TGTGTCTCCATCAGCTACTCCTCAAGATATAAAGAGAGCTTATCGTAAACTTGCTCTGAA 299
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 237 TGTGTCTCCATCAGCGACTCCTCAAGATATAAAAAGAGCTTATCGTAAACTTGCTCTGAA 296
Query 300 ATATCACCCAGATGTCAATAAAGAGGCAAATGCGCAAGAGAAGTTTTTGAAAATAAAGCA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 ATATCACCCAGATGTCAATAAAGAGGCAAATGCGCAAGAGAAGTTTTTGAAAATAAAGCA 356
Query 360 TGCATACACTACTCTGATAAACTCTGACTCACGGCGTAAGTACGGTTCAGATAGTCGCGC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 357 TGCATACACTACTCTGATAAACTCTGACTCACGGCGTAAGTACGGTTCAGATAGTCGTGC 416
Query 420 GTCTGGTTATTCGACGGGTCAAACAAGTCGAAAAGGCAATAGTCAAGTCGAGGAAGATTT 479
| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 417 GACTGGTTCTTCGACGGGTCAAACAAGTCGAAAAGGCAACAGTCAAGTCGAGGAAGATTT 476
Query 480 CTATGGACTTGGGGATTTCTTCAAAGACCTTCAAGAAGAGTATAAAAACTGGGAAGCTAG 539
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 477 CTATGGACTTGGGGATTTCTTCAAAGATCTTCAAGAAGAGTATAAAAACTGGGAAGCTAG 536
Query 540 TGCGTCCTCACAAGGAAAACCGAAAAGTCTTTGGGAAGAACTAGCGGAAATTGGGGAAGA 599
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 537 TGCGTCCTCACAAGGAAAACCGAAAAGTCTTTGGGAAGAACTATCGGAAATTGGAGAAGA 596
Query 600 ATTTGTAGAGTTTCTTGAGAAAGAACTTAACATTAGCGACGAAGACAATGAAGGATCAAG 659
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 ATTTGTGGAGTTTCTTGAGAAAGAACTTAACATTAGCGACGAAGACAATGAAGGATCAAG 656
Query 660 CAAAAACGGAGAAAGATATGATTTTGAAGAAAGCTCCTCAACAGAGAAATCGTCGTCAGG 719
||||||||||||||||| ||||||||||||| |||| |||||||||||| || | ||
Sbjct 657 CAAAAACGGAGAAAGATTTGATTTTGAAGAAGGCTC---AACAGAGAAATCTTC--C-GG 710
Query 720 GAAGAATAATAATAATAGCACGAAGAACAGTATAGAAGACAATATTGATGAGATCGAAGC 779
||||||||||| || |||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 711 GAAGAATAATAGTA---GCACAAAGAATAGTATAGAAGACAATATTGATGAGATCGAAGC 767
Query 780 AACTCTTGCTCAATTGAAGAAAGATCTTGGCTTGCAATAATCCCATGAGTTATATTAAAA 839
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 768 AACTCTTGCTCAATTGAAGAAAGATCTTGGCTTGCAATAATCCCATAAGTTATATTAAAA 827
Query 840 TCTTTTTCTTA 850
| |||||||||
Sbjct 828 TGTTTTTCTTA 838
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41443171275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5