BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496097
Length=728
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59613.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 632 1e-180
AT3G46430.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 220 1e-56
> AT5G59613.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G46430.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:24015474-24016500 REVERSE LENGTH=856
Length=856
Score = 632 bits (342), Expect = 1e-180
Identities = 406/436 (93%), Gaps = 8/436 (2%)
Strand=Plus/Plus
Query 1 ATGAGGTTGTTCGATCCATGGCCAGTGTTCTTCAAGAGAGAATGGAAACGTTGTTGGCCG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGGTTGTTCGATCCATGGCCAGTGTTCTTCAAGAGAGAATGGAAACGTTGTTGGCCG 60
Query 61 TTTCTCACTGGATTCGCCGTCACCGGCGTCCTCATCACCAAGCTCACGGCTGGACTCACC 120
|||||||| ||||||||||| |||||||| ||||||||||||||||| |||||||||||
Sbjct 61 TTTCTCACCGGATTCGCCGTTACCGGCGTTCTCATCACCAAGCTCACCGCTGGACTCACT 120
Query 121 GAGGAAGACGCCAAGAACTCCAAGTTTGTCCAACAACACAGTCGGTAATGTCTTTCTCTT 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 GAGGAAGACGCCAAGAACTCCAAGTTTGTCCAACAACACAGGCGGTAATGTCTTTCTCTT 180
Query 181 TCGATCATATCAATGTTAGATTACGATTTGGAAGCTGAATTAAAATCTGTTATGTGATTT 240
|||||||||||||||||| ||| |||||||||||||||||| |||||||| |||||||||
Sbjct 181 TCGATCATATCAATGTTAAATTTCGATTTGGAAGCTGAATTCAAATCTGT-ATGTGATTT 239
Query 241 CTCCGCATCTATCAATTGAATCTTATCAAGTCACCTACTTCATTCAGATGCCTTAGCATT 300
||| |||||| | ||||||||||||| ||||||||||||||||||||||| ||||| |||
Sbjct 240 CTCTGCATCTGTTAATTGAATCTTATTAAGTCACCTACTTCATTCAGATGGCTTAGAATT 299
Query 301 TTATTGTAATTC-TCAGATTTC-ATTTCTGGTTTTCTCCAATAGCCTATACAAAATCTCA 358
|||||||||||| | ||||| || ||||||||||||||||||||| ||||||||||||
Sbjct 300 TTATTGTAATTCAT--GATTTTGATATCTGGTTTTCTCCAATAGCCTGTACAAAATCTCA 357
Query 359 ATGTGTAATGTTTGATTTGTCT-GCATGTGTTGCTTGAGCCATTTTGGTTCTGTATATAT 417
|||||||||||||||||||||| |||| |||| ||||||||| |||||||||||||||||
Sbjct 358 ATGTGTAATGTTTGATTTGTCTTGCATCTGTTTCTTGAGCCAGTTTGGTTCTGTATATAT 417
Query 418 G--GTAATGCTTGATG 431
|||||||||||||
Sbjct 418 TTTGTAATGCTTGATG 433
Score = 276 bits (149), Expect = 2e-73
Identities = 199/223 (89%), Gaps = 4/223 (2%)
Strand=Plus/Plus
Query 488 TCATGATCTGTTTTGAAATCTCAGGTGATCTACTGATGTGAGTTGTAGAAGC-GAGTAGG 546
||||| |||||| ||||||||||||||||||||||| ||||||||| ||||| ||| ||
Sbjct 577 TCATGTTCTGTTGTGAAATCTCAGGTGATCTACTGACGTGAGTTGTCGAAGCTGAGAAGC 636
Query 547 CTAAGCGTTCTTATGGAAACTACCGTGAGTGCTTCAGC-TT-AAACCTGTTCTAATAACA 604
| ||||||||||||||||||||| | |||||||||||| || ||||||||||||||||||
Sbjct 637 CGAAGCGTTCTTATGGAAACTACTGAGAGTGCTTCAGCTTTCAAACCTGTTCTAATAACA 696
Query 605 TGAAAGAGAGAATTCTAGACACTATGAATCTCTCTTTTTCCGATTCTCTGTGTTTTCACA 664
|||||||||| ||| |||||||||| |||||||| ||| || |||||||||||||||||
Sbjct 697 TGAAAGAGAGGATTATAGACACTATCAATCTCTCGTTT-CCTTTTCTCTGTGTTTTCACA 755
Query 665 GCTCTTGAACAATGCAAATTCTACTTTGTTGATCCGATTTTTT 707
|||||||||| ||||||||||||| |||| |||| |||||||
Sbjct 756 ACTCTTGAACAGTGCAAATTCTACTCTGTTTATCCAATTTTTT 798
> AT3G46430.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: mitochondrion, mitochondrial respiratory chain
complex III; EXPRESSED IN: 25 plant structures; EXPRESSED
DURING: 15 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G59613.2); Has 51 Blast
hits to 51 proteins in 16 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr3:17087594-17088753
FORWARD LENGTH=517
Length=517
Score = 220 bits (119), Expect = 1e-56
Identities = 147/161 (91%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 1 ATGAGGTTGTTCGATCCATGGCCAGTGTTCTTCAAGAGAGAATGGAAACGTTGTTGGCCG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 94 ATGAGGTTGTTCGATCCATGGCCAGTGTTCTTCAAGAGAGAATGGAAACGTTGCTGGCCA 153
Query 61 TTTCTCACTGGATTCGCCGTCACCGGCGTCCTCATCACCAAGCTCACGGCTGGACTCACC 120
|| ||||| || ||||||||||||||||| |||||||||||||| || || ||||||||
Sbjct 154 TTCCTCACCGGTTTCGCCGTCACCGGCGTTCTCATCACCAAGCTAACCGCCGGACTCACT 213
Query 121 GAGGAAGACGCCAAGAACTCCAAGTTTGTCCAACAACACAG 161
|||||||| || |||||||||||||| ||||| ||||||||
Sbjct 214 GAGGAAGATGCTAAGAACTCCAAGTTCGTCCAGCAACACAG 254
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35314605341
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5