BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496101
Length=428
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59690.1 | Symbols: | Histone superfamily protein | chr5:24... 676 0.0
AT5G59970.1 | Symbols: | Histone superfamily protein | chr5:24... 553 6e-157
AT3G45930.1 | Symbols: | Histone superfamily protein | chr3:16... 392 1e-108
AT3G46320.1 | Symbols: | Histone superfamily protein | chr3:17... 379 1e-104
AT3G53730.1 | Symbols: | Histone superfamily protein | chr3:19... 291 5e-78
> AT5G59690.1 | Symbols: | Histone superfamily protein | chr5:24051552-24052143
FORWARD LENGTH=592
Length=592
Score = 676 bits (366), Expect = 0.0
Identities = 411/432 (95%), Gaps = 5/432 (1%)
Strand=Plus/Plus
Query 1 CTTAACCGTTCTTCTTCCTCT--AG-CATCAAATTCTCTCGAGA-AAATCTAAATCTTCG 56
||||||||||||||||| ||| || |||||| ||||||||||| ||| |||||||||||
Sbjct 31 CTTAACCGTTCTTCTTCTTCTACAGACATCAATTTCTCTCGAGATAAA-CTAAATCTTCG 89
Query 57 TTGAAAAAATGTCGGGCCGTGGAAAGGGAGGAAAAGGTTTGGGTAAAGGAGGAGCCAAGC 116
||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 90 CTGAAAAAATGTCGGGTCGTGGAAAGGGAGGAAAAGGTTTGGGTAAGGGAGGAGCCAAGC 149
Query 117 GTCACAGGAAGGTTCTGAGAGACAACATCCAAGGAATCACCAAGCCGGCGATTCGAAGAT 176
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 150 GTCACAGGAAGGTTCTGAGAGACAACATCCAAGGAATCACCAAGCCTGCGATTCGAAGAT 209
Query 177 TGGCTCGTAGAGGTGGAGTCAAGCGTATTAGTGGTCTGATCTACGAGGAGACTCGTGGCG 236
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 210 TGGCTCGTAGAGGTGGAGTCAAGCGTATCAGTGGTCTCATCTACGAGGAGACTCGTGGCG 269
Query 237 TCCTCAAGATCTTTCTCGAGAACGTGATTCGTGATGCTGTTACTTACACCGAGCACGCTA 296
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 270 TCCTCAAGATCTTTCTCGAGAACGTGATTCGTGATGCTGTCACTTACACCGAGCACGCTA 329
Query 297 GGAGGAAGACTGTGACCGCCATGGATGTTGTTTACGCTCTCAAGAGGCAAGGAAGGACTC 356
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 330 GGAGGAAGACTGTGACCGCCATGGATGTTGTCTACGCTCTCAAGAGGCAAGGAAGGACTC 389
Query 357 TTTACGGATTCGGCGGTTAATCGGGGTTTTTCAGATCCGCGTTTGTGTTTTCTGGGTTTC 416
||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 390 TTTACGGATTCGGTGGTTAATTAGAGTTTTTCAGATCCGCGTTTGTGTTTTCTGGGTTTC 449
Query 417 TTACTTAGGCGT 428
| ||||| ||||
Sbjct 450 TCACTTAAGCGT 461
> AT5G59970.1 | Symbols: | Histone superfamily protein | chr5:24146175-24146726
REVERSE LENGTH=552
Length=552
Score = 553 bits (299), Expect = 6e-157
Identities = 334/351 (95%), Gaps = 2/351 (1%)
Strand=Plus/Plus
Query 42 AAATCTAAATCTTCGTTGAAAAAATGTCGGGCCGTGGAAAGGGAGGAAAAGGTTTGGGTA 101
|||||||| || || | || |||||||| || |||||||||||||||||||| |||||||
Sbjct 43 AAATCTAATTC-TC-TCGAGAAAATGTCTGGTCGTGGAAAGGGAGGAAAAGGCTTGGGTA 100
Query 102 AAGGAGGAGCCAAGCGTCACAGGAAGGTTCTGAGAGACAACATCCAAGGAATCACCAAGC 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 101 AAGGAGGAGCCAAGCGTCACAGGAAGGTTCTGAGAGACAACATCCAAGGAATCACCAAGC 160
Query 162 CGGCGATTCGAAGATTGGCTCGTAGAGGTGGAGTCAAGCGTATTAGTGGTCTGATCTACG 221
| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 161 CTGCCATTCGAAGATTGGCTCGTAGAGGTGGAGTCAAGCGTATTAGTGGTCTCATCTACG 220
Query 222 AGGAGACTCGTGGCGTCCTCAAGATCTTTCTCGAGAACGTGATTCGTGATGCTGTTACTT 281
||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 221 AGGAGACACGTGGCGTCCTCAAGATCTTTCTCGAGAACGTAATTCGTGATGCTGTCACTT 280
Query 282 ACACCGAGCACGCTAGGAGGAAGACTGTGACCGCCATGGATGTTGTTTACGCTCTCAAGA 341
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 281 ACACCGAGCACGCTAGGAGGAAGACTGTGACCGCCATGGATGTTGTCTACGCTCTCAAGA 340
Query 342 GGCAAGGAAGGACTCTTTACGGATTCGGCGGTTAATCGGGGTTTTTCAGAT 392
|||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 341 GGCAAGGAAGGACTCTCTACGGATTCGGCGGTTAATCAGGGTTTTTCAGAT 391
> AT3G45930.1 | Symbols: | Histone superfamily protein | chr3:16883316-16883876
FORWARD LENGTH=561
Length=561
Score = 392 bits (212), Expect = 1e-108
Identities = 278/311 (89%), Gaps = 0/311 (0%)
Strand=Plus/Plus
Query 62 AAAATGTCGGGCCGTGGAAAGGGAGGAAAAGGTTTGGGTAAAGGAGGAGCCAAGCGTCAC 121
|||||||| || |||||||||||||| ||||||||||| ||||| |||||||| |||||
Sbjct 72 AAAATGTCAGGTCGTGGAAAGGGAGGCAAAGGTTTGGGCAAAGGTGGAGCCAAACGTCAT 131
Query 122 AGGAAGGTTCTGAGAGACAACATCCAAGGAATCACCAAGCCGGCGATTCGAAGATTGGCT 181
||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||
Sbjct 132 AGGAAGGTTCTGAGAGACAACATCCAAGGAATCACTAAACCGGCGATTCGGAGATTGGCT 191
Query 182 CGTAGAGGTGGAGTCAAGCGTATTAGTGGTCTGATCTACGAGGAGACTCGTGGCGTCCTC 241
||||||||||| || || ||||||||||||||||||||||| ||||| |||||||| |||
Sbjct 192 CGTAGAGGTGGTGTTAAACGTATTAGTGGTCTGATCTACGAAGAGACACGTGGCGTTCTC 251
Query 242 AAGATCTTTCTCGAGAACGTGATTCGTGATGCTGTTACTTACACCGAGCACGCTAGGAGG 301
||||||||| | ||||| || || ||||| || ||||||||||| ||||||||| |||||
Sbjct 252 AAGATCTTTTTGGAGAATGTTATCCGTGACGCCGTTACTTACACTGAGCACGCTCGGAGG 311
Query 302 AAGACTGTGACCGCCATGGATGTTGTTTACGCTCTCAAGAGGCAAGGAAGGACTCTTTAC 361
||||| ||||| || |||||||||||||| ||||| ||||| |||||||| ||||| |||
Sbjct 312 AAGACGGTGACTGCTATGGATGTTGTTTATGCTCTTAAGAGACAAGGAAGAACTCTCTAC 371
Query 362 GGATTCGGCGG 372
|||||||||||
Sbjct 372 GGATTCGGCGG 382
> AT3G46320.1 | Symbols: | Histone superfamily protein | chr3:17019911-17020428
REVERSE LENGTH=518
Length=518
Score = 379 bits (205), Expect = 1e-104
Identities = 277/313 (88%), Gaps = 0/313 (0%)
Strand=Plus/Plus
Query 62 AAAATGTCGGGCCGTGGAAAGGGAGGAAAAGGTTTGGGTAAAGGAGGAGCCAAGCGTCAC 121
|||||||| || |||||||||||||| ||||||||||| ||||| |||||||| |||||
Sbjct 72 AAAATGTCAGGTCGTGGAAAGGGAGGCAAAGGTTTGGGCAAAGGTGGAGCCAAACGTCAT 131
Query 122 AGGAAGGTTCTGAGAGACAACATCCAAGGAATCACCAAGCCGGCGATTCGAAGATTGGCT 181
||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||
Sbjct 132 AGGAAGGTTCTGAGAGACAACATCCAAGGAATCACTAAACCGGCGATTCGGAGATTGGCT 191
Query 182 CGTAGAGGTGGAGTCAAGCGTATTAGTGGTCTGATCTACGAGGAGACTCGTGGCGTCCTC 241
||||||||||| || || |||||||||||| |||||||||||||||| |||||||| |||
Sbjct 192 CGTAGAGGTGGTGTTAAACGTATTAGTGGTTTGATCTACGAGGAGACACGTGGCGTTCTC 251
Query 242 AAGATCTTTCTCGAGAACGTGATTCGTGATGCTGTTACTTACACCGAGCACGCTAGGAGG 301
||||||||| | || || || || ||||| || ||||||||||| ||||||||| |||||
Sbjct 252 AAGATCTTTTTGGAAAATGTTATCCGTGACGCCGTTACTTACACTGAGCACGCTCGGAGG 311
Query 302 AAGACTGTGACCGCCATGGATGTTGTTTACGCTCTCAAGAGGCAAGGAAGGACTCTTTAC 361
||||| ||||| || |||||||||||||| ||||| ||||| |||||||| ||||| ||
Sbjct 312 AAGACGGTGACTGCTATGGATGTTGTTTATGCTCTTAAGAGACAAGGAAGAACTCTCTAT 371
Query 362 GGATTCGGCGGTT 374
|||||||| ||||
Sbjct 372 GGATTCGGTGGTT 384
> AT3G53730.1 | Symbols: | Histone superfamily protein | chr3:19912494-19913033
REVERSE LENGTH=540
Length=540
Score = 291 bits (157), Expect = 5e-78
Identities = 270/324 (83%), Gaps = 9/324 (3%)
Strand=Plus/Plus
Query 61 AAAAATGTCGGGCCGTGGAAAGGGAGGAAAAGGTTTGGGTAAA-GGAGGAGCCAAGCGTC 119
||||||||| ||||| ||||||||||||||||| || || ||| |||||||||||| | |
Sbjct 60 AAAAATGTCAGGCCGAGGAAAGGGAGGAAAAGGATTAGG-AAAGGGAGGAGCCAAGAGAC 118
Query 120 A-CAGGAAGGTTCTGAGAGACAACATCCAAGGAATCACCAAGCCGGCGATTCGAAGAT-T 177
| | |||| || || ||||||||||||||||| || ||||| || |||||||| | | |
Sbjct 119 ATC-GGAAAGTACTCAGAGACAACATCCAAGGGATTACCAAACCTGCGATTCGTCG-TCT 176
Query 178 GGCTCGTAGAGGTGGAGTCAAGCGTATTAGTGGTCTGATCTACGAGGAGACTCGTGGCGT 237
|| | ||||| || || |||||||| |||||| ||||||| || |||||||| |||||
Sbjct 177 CGCGAGAAGAGGAGGCGTGAAGCGTATCAGTGGTTTGATCTATGAAGAGACTCGCGGCGT 236
Query 238 CCTCAAGATCTTTCTCGAGAACGTGATTCGTGATGCTGTTACTTACACCGAGCACGCTAG 297
|||||||||||||||||||||||||||||||| || ||||||||||| ||||||||| |
Sbjct 237 TCTCAAGATCTTTCTCGAGAACGTGATTCGTGACGCCGTTACTTACACGGAGCACGCTCG 296
Query 298 GAGGAAGACTGTGACCGCCATGGATGTTGTTTACGCTCTCAAGAGGCAAGGAAGGACTCT 357
|||| ||||| || || ||||| || ||||||||||||||||| |||||| | ||| |
Sbjct 297 CCGGAAAACTGTTACGGCGATGGACGTCGTTTACGCTCTCAAGAGACAAGGACGAACT-T 355
Query 358 T-TACGGATTCGGCGGTTAA-TCG 379
| || ||||||||||| ||| |||
Sbjct 356 TGTATGGATTCGGCGGCTAAATCG 379
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20308170596
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5