BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496103
Length=2730
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59710.1 | Symbols: VIP2, AtVIP2 | VIRE2 interacting protein... 4096 0.0
> AT5G59710.1 | Symbols: VIP2, AtVIP2 | VIRE2 interacting protein
2 | chr5:24057407-24061918 FORWARD LENGTH=2777
Length=2777
Score = 4096 bits (2218), Expect = 0.0
Identities = 2600/2775 (94%), Gaps = 64/2775 (2%)
Strand=Plus/Plus
Query 1 TTTTCCGATTTAGGGCACCAAATTG-ATACAAAATCTCCGC-TCTTCCCAATTTACGAAA 58
||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||
Sbjct 14 TTTTCCGATTTAGGGCACCAAATTGAAT-CAAAATCTCCGCTTCTTCCCAATTTACGAAA 72
Query 59 CCTCACG-AAAATCTTCTTCGGA---TTCTTAACCctttctctcaattcttcttccaggg 114
| ||||| ||||||||||||||| |||||||||||||||||||||| ||||||||| |
Sbjct 73 CTTCACGAAAAATCTTCTTCGGATTCTTCTTAACCCTTTCTCTCAATTTTTCTTCCAGAG 132
Query 115 ttttcgaattgagcactg--t-tc-tcttcttcttcttcttcCTCCGTACGCATCCTTCT 170
||||| ||||| |||||| | || |||||||||||||||||||||||||||||||||||
Sbjct 133 TTTTCTAATTGGGCACTGTTTCTCTTCTTCTTCTTCTTCTTCCTCCGTACGCATCCTTCT 192
Query 171 CC-TTTTACTG-TGAGTGTGAACAGATTCAAAAC-ACG-CGATTTTTAGGGTTTTCGGAG 226
|| |||||||| |||||||||||||||| |||| ||| | |||| ||||||||||||||
Sbjct 193 CCTTTTTACTGTTGAGTGTGAACAGATT-TAAACAACGTC-ATTTCTAGGGTTTTCGGAG 250
Query 227 TTCAATTTCCTTATCCTACTATTGAGTTTGCATCGCGATAGCTGAATTTTGAGATCCTGT 286
|||||||| ||||| ||||||||| ||||||||||||||||||||||| | ||||||||
Sbjct 251 TTCAATTTTGTTATCTTACTATTGAATTTGCATCGCGATAGCTGAATTTAG-GATCCTGT 309
Query 287 GTTGTTTACTCAGTCGTAATT-TCACAACAGCTGAATTACGCTT-C---CG-TTG----- 335
|||| || ||||||||| ||| | ||||| | |||||||||||| | | |||
Sbjct 310 GTTG-TTGCTCAGTCGT-ATTATTACAACTGTTGAATTACGCTTGCGTTTGATTGTTTTT 367
Query 336 ------ATTGGATCCTCGTTAGttttttttttCTCGTTCTGAATCG-TTCCTAGACTTCT 388
||||||||||||| || ||||||||||| ||||||||||| ||||| |||||||
Sbjct 368 TTCTTTATTGGATCCTCGTGAGGTTTTTTTTTCTTGTTCTGAATCGTTTCCTGGACTTCT 427
Query 389 GATTTCCTGCTAGAAGTTTGTTTCATGGTTGCTGATTCATTATCTTCTTGTTTCTGGATG 448
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 428 GATTTCCTGCTAGAAGTTTATTTCATGGTTGCTGATTCATTATCTTCTTGTTTCTAGATG 487
Query 449 AAAAGTTTTGCTTG-GGATAAACCTTGAAAGAATGAGAATTTCAATCTTACTTTGAACAA 507
|||| ||| | || | ||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 488 -AAAG-TTTAC-TGTGTATAAACCTTCAAAGGATGAGAATTTCAATCTTACTTTGAACAA 544
Query 508 TATGTAGTTTATACAGTAAATTCGTCTGGTGTTGCACCATGGTTAATAAGATTTATGTCT 567
|||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||
Sbjct 545 TATGTAGTTTATACAGTAGCTTCGTCTGTTGTTGCACCATGGTTGATAAGATTTATGTCT 604
Query 568 CCTTTGTTTAGTTTATAGAATTCTT-CTTTTTT-CAGGCTATTCATTTCTGTG-CGTCGT 624
||||||||| |||||| |||||||| ||||||| ||||||||||||||||| | ||||
Sbjct 605 CCTTTGTTTGGTTTATTGAATTCTTCCTTTTTTCCAGGCTATTCATTTCTGAGTAATCGT 664
Query 625 TTATTCCCTCTCAGATTGTAGGTGGTGGTTCGCGTCTTGTCGCCGAATGATATTTTGCCT 684
||||||| |||||||||||||| ||| ||||||||||||| |||||||||| ||| ||
Sbjct 665 TTATTCCATCTCAGATTGTAGGCGGT--TTCGCGTCTTGTCACCGAATGATACATTGTCT 722
Query 685 CAC-T-TGATTATCAGTCAGTTCGTGCAATGTCAAACCTTCATTCATCTCTCAATGGTTC 742
||| | |||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 723 CACGTGAGATTGTCAGTCAGTTAGTGCAATGTCAAACCTTCATTCATCTCTCAATGGTTC 782
Query 743 AGCTTCAAATTTACCAGATGGGTCTGGCAGATCGTTTACTGCTTCTTATTCTGGACAATC 802
|||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 783 AGCTTCGAATTTACCAGATGGTTCGGGCAGATCGTTTACTGCTTCTTATTCTGGACAATC 842
Query 803 TGGTGCACCGTCTCCCTCTTTTCATCATACTGGAAATCTTCAGGGACTTCATAATATTCA 862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 TGGTGCACCGTCTCCCTCTTTTCATCATACTGGAAATCTTCAGGGACTTCATAATATTCA 902
Query 863 TGGGAACTATAATGTCGGGAACATGCAAGGTACACTTACATCAAGAAACTCAAGTATGAA 922
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 903 TGGGAACTATAATGTCGGGAACATGCAAGGTACACTTACATCAAGAAACTCAAGTATGAA 962
Query 923 TAGTATACCATCTGCCGGGGTTCAACAACCTAATGGGGGTTTTTCCAGTGGAAGATTTGC 982
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 963 TAGTATACCATCTGCCGGAGTTCAACAACCTAATGGGAGTTTTTCCAGTGGAAGATTTGC 1022
Query 983 TTCAAATAATCTACCTGTTAATCTATCTCAGATGTCTCATGGTAGCTCTCATGGGCATTC 1042
|||||||||||||||||||||||| |||||| |||| ||||||||||| |||||||||||
Sbjct 1023 TTCAAATAATCTACCTGTTAATCTCTCTCAGTTGTCCCATGGTAGCTCACATGGGCATTC 1082
Query 1043 TGGAATCCCAAATAGAGGAGTTCTTAATGTTGTTGGCAACCCTGGATTCAATAGTACCGC 1102
||||||||||||||||| | |||||||||||||||||||||||||||| ||||| |||
Sbjct 1083 GGGAATCCCAAATAGAGG--T-CTTAATGTTGTTGGCAACCCTGGATTCAGTAGTAACGC 1139
Query 1103 TAATGGAGTTGGTGGTTCTATTCCTGGAATTCTCTCTACATCTGCAGGACTCAGTAATCG 1162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TAATGGAGTTGGTGGTTCTATTCCTGGAATTCTCTCTACATCTGCAGGACTCAGTAATCG 1199
Query 1163 GAGTAGTGTTCCAGGGATGGGAATGTCCCAATTGTTGGGAAATTCAGGTCCTCGGATAAC 1222
|| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1200 GAATAGTGTTCCAGGGATGGGAATATCCCAATTGTTGGGAAATTCAGGTCCTCGAATAAC 1259
Query 1223 AAATTCAATGGGAAACATGGTTGGTGGAGGTAACTTGGGGAGGAATATTAGCTCTGGTGG 1282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 AAATTCAATGGGAAACATGGTTGGTGGAGGTAACTTGGGGAGGAATATTAGCTCTGGTGG 1319
Query 1283 ATTATCTATTCCTGGTCTGTCTTCTCGACTAAATTTGGCAGCAAATAGCGGATCAGGATT 1342
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1320 ATTGTCTATTCCTGGTCTGTCTTCACGACTAAATTTGGCAGCAAATAGCGGATCAGGATT 1379
Query 1343 AAATGTACAGGGACAGAACCGAATGCTGGGTGGAGTACTTCCTCAAGGATCTCAGGTCAT 1402
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1380 AAATGTTCAGGGACAGAACCGAATGATGGGTGGAGTACTTCCTCAAGGATCTCAGGTCAT 1439
Query 1403 GTCTATGCTGGGGAACTCCTATCATGCTGGTGGTGGCCCACTTTCGCAGAACCATGTTCA 1462
||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||
Sbjct 1440 GTCTATGCTGGGGAACTCCTATCATACTGGTGGTGGCCCGCTTTCGCAGAATCATGTTCA 1499
Query 1463 GTCAGTTAACAATATGATGCTCAGTGATCACTC-TAACGATAGCTCTCTTTTTGACATCA 1521
|||||||||||||||||||||||||||||| || |||||| |||||||| ||||||||||
Sbjct 1500 GTCAGTTAACAATATGATGCTCAGTGATCA-TCCTAACGACAGCTCTCTATTTGACATCA 1558
Query 1522 ACAACGATTTTCCCCAGCTGACAAGTCGTCCTGGATCTGCTGGTGGCACTCAAGGACAAC 1581
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1559 ACAACGATTTTCCCCAGCTGACAAGTCGTCCTGGGTCTGCTGGTGGCACTCAAGGACATC 1618
Query 1582 TAGGCTCTTTGAGGAAACAAGGTTTAGGTGTCCCACTTGTCCAACAAAACCAGGAGTTCA 1641
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1619 TAGGCTCTTTGAGGAAACAAGGTTTAGGAGTTCCACTTGTCCAACAAAACCAGGAGTTCA 1678
Query 1642 GCATCCAAAATGAAGACTTTCCTGCTCTACCTGGATATAAAGGTGGTAATTCTGATTATC 1701
||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||
Sbjct 1679 GCATCCAAAATGAAGACTTTCCTGCCCTTCCTGGATATAAAGGTGGTAATTCTGAGTATC 1738
Query 1702 CTATGGATTTGCATCAGAAAGAACAACTCCATGACAATGCTATGTCAATGATGCACTCTC 1761
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1739 CTATGGATTTGCATCAAAAAGAACAACTGCATGACAATGCTATGTCAATGATGCACTCTC 1798
Query 1762 AAAACTTTTCTATGGGTAGATCTGGTGGTTTCAACTTGGGAGCAACATATTCATCACATC 1821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1799 AAAACTTTTCTATGGGTAGATCTGGTGGTTTCAACTTGGGAGCAACATATTCATCACATC 1858
Query 1822 GTCCACAACAACAGCCACAACATACTTCATCTACTGGTGGGCTACAGGGTCTTGGCCTTA 1881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1859 GTCCACAACAACAGCCACAACATACTTCATCTACTGGTGGGCTACAGGGTCTTGGCCTTA 1918
Query 1882 GACCTCTAAGCTCCCCCAATGCAGTTTCCAGTATTGGTTATGATCAGCTTATACAGCAGT 1941
||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1919 GACCTCTAAGCTCGCCTAATGCAGTTTCCAGTATTGGTTATGATCAGCTTATTCAGCAGT 1978
Query 1942 ATCAGCAACATCAAAATCAATCCCAGTTTCCTGTGCAACAGATGTCATCAATCAACCAAT 2001
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1979 ATCAGCAACATCAAAATCAATCCCAGTTCCCTGTGCAACAGATGTCATCAATCAACCAAT 2038
Query 2002 TTAGAGATTCTGAGATGAAATCGACACAGTCAGAGGCAGATCCTTTTTGCTTACTTGGCT 2061
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2039 TTAGAGATTCTGAGATGAAATCGACACAGTCAGAGGCAGATCCTTTTTGCTTGCTTGGCT 2098
Query 2062 TGTTAGACGTACTAAACAGGAGCAACCCTGAATTGACCTCACTTGCTCTTGGCATCGACT 2121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2099 TGTTAGACGTACTAAACAGGAGCAACCCTGAATTGACCTCACTTGCTCTTGGCATCGACT 2158
Query 2122 TGACGACACTAGGATTGGATTTGAATTCAAATGGAAATCTTTACAAGACATTTGCTTCCC 2181
||||||| |||||||||||||||||||||| ||||||||| |||||||||||||| || |
Sbjct 2159 TGACGACGCTAGGATTGGATTTGAATTCAACTGGAAATCTCTACAAGACATTTGCGTCTC 2218
Query 2182 CCTGGACCAATGAACCGGCAAAGAGCGAGGTCGAGTTCACAGTACCAAATTGTTACTACT 2241
| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2219 CTTGGACAAATGAACCGGCAAAGAGCGAGGTCGAGTTCACAGTACCAAATTGTTACTACG 2278
Query 2242 CCACACCACCTCCGCCTCTAACTCGAGCTAGTTTCAAAAGATTCTCCTACGAGTTATTGT 2301
||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2279 CCACAGAACCTCCGCCTCTAACTCGAGCTAGTTTCAAAAGGTTCTCCTACGAGTTATTGT 2338
Query 2302 TCTACACATTTTACAGTATGCCGAAAGATGAAGCACAGCTATTCGCAGCAGATGAACTTT 2361
|||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||
Sbjct 2339 TCTACACATTTTACAGTATGCCAAAAGATGAAGCACAGCTGTACGCAGCAGATGAACTTT 2398
Query 2362 ACGAAAGAGGTTGGTTTTACCACAAGGAACTCAGATTATGGTTCTTCAGAGTTGGGGAAC 2421
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 2399 ACGAAAGAGGTTGGTTTTACCACAAGGAACTCAGAGTATGGTTCTTCAGAGTCGGGGAAC 2458
Query 2422 CTTTAGTCAGGGCAGCTACATATGAAAGAGGAACATATGAATACCTCGATCCAAATTCGT 2481
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 2459 CTTTAGTCAGGGCAGCTACATATGAAAGAGGAACATACGAATACCTTGATCCAAATTCGT 2518
Query 2482 TCAAAACAGTCAGAAAGGAACATTTTGTTGTCAAGTACGAGCTCATGGAAAAGAGACCAA 2541
|||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 2519 TCAAAACAGTGAGAAAGGAACATTTTGTTATCAAGTACGAGCTTATGGAAAAGAGACCAA 2578
Query 2542 GCTTGCTGCAGCATTGACGACATGTAGGTTTGTTCAATTAGTAGCATCTTTACAATGTAA 2601
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2579 GCTTGCTGCAGCTTTGACGACAAGTAGGTTTGTTCAATTAGTAGCATCTTTACAATGTAA 2638
Query 2602 AGCTTTTCTCTTCATTTCTATCTCTTTGTCTCTTTCGTTCATGCAAGTTTTATTGATTAG 2661
||||||||||||||||||| | ||||| || || | |||||||||||| ||||||||||
Sbjct 2639 AGCTTTTCTCTTCATTTCTCTTTCTTT--CT-TT-CTTTCATGCAAGTTCTATTGATTAG 2694
Query 2662 AAACCAAA-CCAT--C-T--CACATTTTCAATTTTTAACCCCAAGTTTCCCAAAAAGGTA 2715
|||||||| |||| | | ||||||||||||||||||||||||||||||||||||||||
Sbjct 2695 AAACCAAAACCATGACATATCACATTTTCAATTTTTAACCCCAAGTTTCCCAAAAAGGTA 2754
Query 2716 ATCACAGTTACTTTC 2730
|||||| ||||||||
Sbjct 2755 ATCACAATTACTTTC 2769
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 135601246929
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5