BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496104
Length=664
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59720.1 | Symbols: HSP18.2 | heat shock protein 18.2 | chr5... 928 0.0
> AT5G59720.1 | Symbols: HSP18.2 | heat shock protein 18.2 | chr5:24062577-24063277
FORWARD LENGTH=701
Length=701
Score = 928 bits (502), Expect = 0.0
Identities = 615/668 (92%), Gaps = 13/668 (2%)
Strand=Plus/Plus
Query 1 GAAAAGCAACAAACGATGTCTCTAATTCCAAGCATTTTCGGAGGACGTAGATCAAACGTC 60
|||||||||| ||| |||||||| |||||||||||||| |||||||| ||||||||||||
Sbjct 41 GAAAAGCAACGAACAATGTCTCTCATTCCAAGCATTTTTGGAGGACGCAGATCAAACGTC 100
Query 61 TTCGATCCGTTCTCGCAAGACGTATGGGATCCATTCGAAGGATTCTTCACCCCATCTTCT 120
|| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 101 TTTGATCCGTTCTCGCAAGACTTATGGGATCCATTCGAAGGATTCTTCACGCCATCTTCT 160
Query 121 GCGTTAGCAAACGCTTCAACCGCTCGTGATGTGGCAGCGTTTACAAACGCAAGAGTGGAC 180
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 161 GCGTTGGCAAACGCTTCAACCGCTCGTGATGTGGCAGCGTTTACAAACGCAAGAGTGGAT 220
Query 181 TGGAAGGAGACCCCCGAGGCACACGTGTTCAAAGCGGATTTACCGGGACTGAAGAAGGAA 240
|||||||| || || |||||||| |||||||||||||| || || || ||||||||||||
Sbjct 221 TGGAAGGAAACGCCGGAGGCACATGTGTTCAAAGCGGACTTGCCAGGCCTGAAGAAGGAA 280
Query 241 GAAGTGAAGGTTGAGGTTGAAGACAAGAACGTTCTGCAGATTAGCGGAGAGAGGAGCAAG 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 281 GAAGTCAAGGTTGAGGTTGAAGACAAGAACGTTCTGCAGATTAGCGGAGAGAGGAGCAAG 340
Query 301 GAGAACGAAGAGAAGAACGATAAGTGGCACCGTGTGGAGAGGGCTAGTGGGAAGTTTATG 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 341 GAGAACGAAGAGAAGAACGATAAGTGGCACCGTGTGGAGAGAGCTAGTGGGAAGTTTATG 400
Query 361 AGGAGGTTCAGGTTGCCGGAGAATGCAAAGATGGAGGAAGTGAAGGCAACTATGGAGAAT 420
|| ||||| ||||| |||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 401 AGAAGGTTTAGGTTACCGGAGAATGCAAAGATGGAAGAAGTGAAGGCAACAATGGAGAAT 460
Query 421 GGTGTGCTTACGGTTGTGGTTCCGAAAGCGCCGGAGAAGAAGCCTCAAGTCAAGTCGATT 480
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 461 GGTGTGCTTACGGTTGTGGTTCCGAAAGCGCCTGAGAAGAAGCCTCAAGTCAAGTCCATC 520
Query 481 GATATCTC-GG--CTAATTGAATATGAAGATTGAAAATGAAG-ATTTGGTGTGTGAAATA 536
|||||||| || |||||||||||||||||| ||| ||||| ||||||||||| |||||
Sbjct 521 GATATCTCCGGGGCTAATTGAATATGAAGAT-GAAGATGAAATATTTGGTGTGTCAAATA 579
Query 537 AAAAGcttgtgtgcttaagcttgtgtttcttttttcttttgggtttgttgtgttgtgaaa 596
||||||||||||||||||| |||||||| |||| ||| || || |||||||| ||||
Sbjct 580 AAAAGCTTGTGTGCTTAAGTTTGTGTTT-TTTT--CTT--GGCTT-GTTGTGTTATGAAT 633
Query 597 ttgtcgctttctttctAAAATCATATGAATGTAAGATCTCATTATAATGAATAAACGAAT 656
|||| ||||| || |||| || | |||||||||||||||||||||||||||||||| |||
Sbjct 634 TTGTGGCTTT-TT-CTAATATTAAATGAATGTAAGATCTCATTATAATGAATAAACAAAT 691
Query 657 GTTTCTAT 664
||||||||
Sbjct 692 GTTTCTAT 699
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32099619933
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5