BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496109
Length=771
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59760.1 | Symbols: | Protein of unknown function (DUF1635)... 1120 0.0
> AT5G59760.1 | Symbols: | Protein of unknown function (DUF1635)
| chr5:24075628-24076512 REVERSE LENGTH=796
Length=796
Score = 1120 bits (606), Expect = 0.0
Identities = 738/797 (93%), Gaps = 28/797 (4%)
Strand=Plus/Plus
Query 1 TGTATATGCATGTACTATATATAGGTTCCAAGCAACCACTATAAAGGATCATTATTAGTC 60
|||||||||| ||||||||||||| |||||||||||| |||||||||||||| ||||||
Sbjct 2 TGTATATGCACATACTATATATAGGGTCCAAGCAACCATTATAAAGGATCATTCTTAGTC 61
Query 61 TTGA-AACAGAGTATAACAAAACACACACATTGATCAATGGATGTCTTATATTCTTCTAA 119
|| | ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 62 TT-ACAACAGAGTATAACAAAACACAGACACTGATCAATGGATGTCTTATATTCTTCTAA 120
Query 120 CTGGCTTCATCAAGAGAGCATTGATGAGATGAGGCAGAATCTACAGAGCACTCTGTTCGA 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTGGCTTCATCAAGAGAGCATTGATGAGATGAGGCAGAATCTACAGAGCACTCTGTTCGA 180
Query 180 ACTAGAGACACTGAAAATGGAAGCTAATGAGAAATCAAAAACACACAGAGAAGAAGTGAA 239
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 ACTAGAGACACTGAAAATGGAAGCTAATGAGAAATCAAGAACACACAGAGAAGAAGTGAA 240
Query 240 CCAACTTCTCAATCTCCTCAAATTCACTCAACAAGAACGAGACGAAGCTAGACAACAACT 299
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
Sbjct 241 CCAACTTCTCAATCTCCTCAAATTCACTCAGCAAGAAAGAGACGAAGCTAGACAACAGTT 300
Query 300 ATCCCAATTCATC-T---T---C--CAAAACCCTACTTCAAGAAGCAC-CACTGAATCAA 349
||| ||||||||| | | | |||||||||| |||||||||| | |||| ||||||
Sbjct 301 ATCTCAATTCATCTTCCATACCCAACAAAACCCTAATTCAAGAAGC-CTCACTAAATCAA 359
Query 350 ACAG---CT-T--CTCTCAAGATGTATCTTCTTCTTCTTCCTCAGAACTCTCCAGCTTCC 403
|||| || | ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 360 ACAGCTTCTCTCACTCTCAAGATGTATCTTCTTCTTCTTCCTCAGAACTCTCCACCTTCC 419
Query 404 TCAACGTCAATCCTCAGCCGTTGATGAATCTTGAAGTTCCAACGGCTCATAATCATCATC 463
||||| || ||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 420 TCAACATCCATCCTCAGCCGTTGACGAATCTTGAAGATCCAACGGCTCATAATCATCATC 479
Query 464 AGC---TTGATCCTCTAGACGTTCTTGTGATGGGGAAAGCTTTTCCAGAAACGGGAAAGC 520
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AGCAGATTGATCCTCTAGACGTTCTTGTGATGGGGAAAGCTTTTCCAGAAACGGGAAAGC 539
Query 521 TTTTGAAAGCGGTGGTTGAAGCTGGACCGCTTCTTCAAACGCTTCTTTTGGCAGGACCGC 580
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 540 TTTTGAAAGCGGTGGTTGAAGCTGGACCGCTTCTTGAAACGCTTCTTTTGGCTGGACCGC 599
Query 581 TACCAAAATGGATCAACCCACCGCCTCAAACGCA---GC-G--TTTTGAGTTACCTTCTC 634
||||||||||||| ||||| |||||||||||||| || | ||||||||||||||||
Sbjct 600 TACCAAAATGGATAAACCCGCCGCCTCAAACGCAATCGCAGCGTTTTGAGTTACCTTCTA 659
Query 635 TCTCGTTTAGAGGGTCCGAGGTTGATAGTAAATGTGATTCTCTGACGTGTTCTGGTTCGG 694
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 660 TCTCGTTTAGAGGGTCCGATGTTGATAGTAAATGTGATTCTATGACGTGTTCTGGTTCGG 719
Query 695 TTAATAGTATTGGGTTCGGTTCGAGTTTGGTTATCGATCAATCAATGCTAACCGGAAAGA 754
|||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 720 TTAATAGTTTTGGGTTCGGTTCGAGTTTGGTTATCGATCAATCGATGTTAACCGGAAAGA 779
Query 755 GGCAGAGATTAGAGTAG 771
|||||||||||||||||
Sbjct 780 GGCAGAGATTAGAGTAG 796
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37474673662
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5