BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496114
Length=1690
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59790.1 | Symbols: | Domain of unknown function (DUF966) |... 2379 0.0
> AT5G59790.1 | Symbols: | Domain of unknown function (DUF966)
| chr5:24090715-24093168 FORWARD LENGTH=1871
Length=1871
Score = 2379 bits (1288), Expect = 0.0
Identities = 1606/1748 (92%), Gaps = 68/1748 (4%)
Strand=Plus/Plus
Query 1 GCCCTTTGTCTCTCGCATCC-CATATTTCAAAATCTCACACTCTCTCTTTCCTCTCTTCT 59
|||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||| ||
Sbjct 1 GCCCTTTGTCTCTCGCATCCTCATTTTTCAAAATCT--CACTCTCTCTTTCCTCTCTGCT 58
Query 60 TTCATTTACTTTCTATAAATCCAAACTCATAAACAAAAGATTTTGTC-TT---TC--CAT 113
||||||| |||||||||||||||||||| |||||||||||||||||| || || |||
Sbjct 59 TTCATTTGCTTTCTATAAATCCAAACTCTTAAACAAAAGATTTTGTCTTTCCATCAACAT 118
Query 114 CAA------C----A-T----c----actctcacttt-aaactcctt--c-acttcgtgt 150
||| | | | | ||||||||||| ||||||||| | |||||||||
Sbjct 119 CAACTCCCTCATAAACTCCCACAAAGACTCTCACTTTAAAACTCCTTCACTACTTCGTGT 178
Query 151 tcttcgtct-attttctttctttctttcacttttcCACAAGCAAAGAAACAAAAAGGATG 209
||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 179 TCTTCGTCTCTTTTTCTTTTTTTCTTTCACTTTTCCATAAGCAAAGAAACAAAAAGGATG 238
Query 210 AGTTCAAGAGTGTTCAGAGCAACACCAGATAACAACTATCTGGTCCCCAGGAGATCCAAA 269
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 239 AGTTCAAGAGTGTTCAGAGCAACACCAGATAACAACTATTTGGTCCCCAGGAGATCCAAA 298
Query 270 GACCAACAAGACTCCAGTCCCGACCGTAACCGAATCTGGTCGGAGCCTCGTCATAAACCG 329
|||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 299 GACCAACAAGACACCAGTCCCGACCGTAACCGAATCTGGTCTGAGCCTCGTCTTAAACCC 358
Query 330 GTCGTTAACCGGAAAGTCCCAGTCGTCTACTATCTCTGCCGCAATGGTCAGCTTGACCAT 389
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 359 GTCGTTAACCGGAAAGTCCCAGTCGTCTATTATCTCTGCCGGAATGGTCAGCTTGACCAT 418
Query 390 CCTCATTTCATGGAAGTCACTCTCTCTTCCCACGATGGTCTTTATCTCAAAGATGTGATA 449
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 CCTCATTTCATCGAAGTCACTCTCTCTTCCCACGATGGTCTTTATCTCAAAGATGTGATA 478
Query 450 AACCGCTTGAATGATCTTAGAGGGAAAGGCATGGCAAGTCTCTACTCTTGGTCTTCCAAA 509
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 479 AACCGCTTGAATGATCTAAGAGGGAAAGGCATGGCAAGTCTCTACTCTTGGTCTTCGAAA 538
Query 510 CGGAGCTACAAAAATGGATTTGTCTGGCACGATTTATCGGAGGACGATTTCATCTTCCCG 569
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 CGGAGCTACAAAAATGGATTTGTCTGGCACGATTTATCGGAGGACGATTTCATCTTCCCT 598
Query 570 GTGCAAGGTCAAGAATACGTTCTCAAAGGCTCTGAGGTTCTTGATCCTTGTCTTATCTCA 629
|| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 599 GTTCAAGGTCAAGAATATGTTCTCAAAGGCTCTGAGGTTCTTGATTCTTGTCTTATCTCA 658
Query 630 AACCCAAGAAGCCTCCTTGAAACGTCGTCTTTTAGGGATCCAAGATCTCTAAACCCTGAT 689
||||||||||||||||| ||||||||||| ||||| || ||||||||| |||| || |||
Sbjct 659 AACCCAAGAAGCCTCCTCGAAACGTCGTCGTTTAGAGACCCAAGATCTTTAAATCCAGAT 718
Query 690 AAAAACTCCGGCGATGATATCCCGGCGGTGATAAATCGCCGGAGAAACCAGTCTTGGAGC 749
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 719 AAAAACTCCGGCGATGATATCCCGGCGGTGATAAATCGACGGAGGAACCAGTCTTGGAGC 778
Query 750 TCCATCGATCTCAGCGAGTACAAGGTTTACAAAGCAACCGAGTCAAGCGCCGAGTCAACT 809
|| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 779 TCTATCGATCTCAGCGAGTACAAAGTGTACAAAGCAACCGAGTCAAGCGCCGAGTCAACT 838
Query 810 CAAAGACTCGCTGCAGACGCTTCTACTCAAACAGACGATAGACGACGGAGGAGAAAACCG 869
|||||||||||||| |||||||||||||| || |||||||||||||||||||||| ||||
Sbjct 839 CAAAGACTCGCTGCGGACGCTTCTACTCAGACTGACGATAGACGACGGAGGAGAAGACCG 898
Query 870 GCGAAAGAGGAAATAGAAGAGGTGAAAAGTCCGGTGAGTTACGAGAACCAGAGTACAGAG 929
|||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||
Sbjct 899 GCGAAAGAGGAAATAGAAGAGGTGAAAAGTCCGGCGAGTTATGAGAATCAGAGTACAGAG 958
Query 930 CTGAGCAGAGACGAGATATCTCCTCCACCGTCGGATTCAAGTCCCGAGACATTAGAGAAT 989
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 CTGAGCAGAGACGAGATATCTCCTCCACCGTCGGATTCAAGTCCCGAGACATTAGAGAAT 1018
Query 990 CTGATCAAAGCAGATGGACGGCTGATATTGCGTCCTAACGAAAGCAGCACCGATCATCGG 1049
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1019 CTGATCAAAGCCGATGGACGGCTGATATTGCGTCCTAGCGAAAGCAGCACCGATCATCGG 1078
Query 1050 ACGGTCGAGAGTTTATCCAGCGGAAGAATGAGAGCTTCGGCTGTATTAATGCAGCTGATA 1109
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1079 ACGGTCGAGAGTTTATCCAGCGGAAGAATGAGAGCTTCGGCTGTGTTAATGCAGCTGATA 1138
Query 1110 TCGTGTGGTACGATGTCGTTTAAAGAATGTGGGCCTGTTTTGTTGAAAGATCAAGGGCTA 1169
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 TCGTGTGGTACGATGTCGTTTAAAGAATGTGGGCCTGTTTTGTTGAAAGATCAAGGGCTG 1198
Query 1170 CCGTTGAATGGGCGTAGCGAGTGTACGTTAACGCGAGGAGCAGAGGATAATTATGGGGAT 1229
||||||| |||||||||| ||||||| ||||||||||||||||||||||| || |||
Sbjct 1199 GCGTTGAACGGGCGTAGCGGGTGTACGATAACGCGAGGAGCAGAGGATAATGGTGAGGAG 1258
Query 1230 AGGGTAGAAAAGGAATTAAAGAGCTTAGGAAGGGTAAAACTGGAAGATAAGGAGTATTTT 1289
|||||||| |||||||||||||| || ||||||||| || ||||||||||||||||||||
Sbjct 1259 AGGGTAGATAAGGAATTAAAGAGTTTTGGAAGGGTACAATTGGAAGATAAGGAGTATTTT 1318
Query 1290 AGCGGCAGTTTGATTGAGACCAAGAAGGAACTTGTTCCTGCTTTGAAAAGATCTTCTTCT 1349
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1319 AGCGGCAGTTTGATTGAGACCAAGAAGGAGCTTGTTCCTGCTTTGAAAAGATCTTCTTCT 1378
Query 1350 TACAATGCTGACAGGAATTCAAGAATGGGACCAACGGCGGAGAAGGATGAGGAAGAGGCG 1409
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 1379 TACAATGCTGACAGGTGTTCAAGAATGGGACCAACGACGGAGAAGGATGAGGAAGAAGCG 1438
Query 1410 GTTCGAGCTAAGTGCATTCCGAGAAAACCAAAGCCGGTGGCTCTAAGGAACAATGGTGGG 1469
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1439 GTTCGAGCTAAGTGCATTCCGAGAAAACCAAAGCCGGTGGCTAAAAGGAACAATGGTGGG 1498
Query 1470 CAGCAGTAACAAAAACGGCACGC--AGTCTAACAAGCTTATTTTGTGTTTTAAGTAGCAG 1527
|||||||||||||||||||||| |||||||||||||||||||| |||| |||||| |
Sbjct 1499 CAGCAGTAACAAAAACGGCACGATGAGTCTAACAAGCTTATTTTGGGTTT-AAGTAG-A- 1555
Query 1528 AGAAGAGATAAGAAGAATAGGGAATGATGAGTTTGTTAAGCATTGTGAATTGTGTAGGTa 1587
||| || | ||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1556 AGA-GA-A-AAGTAGAATAGGGAATGATGAGTTTGTAAAGCATTGTGAATTGTGTAGGTA 1612
Query 1588 aa--a-aa-aa---------aT--TAA---------GAGTTAACATGATGGGTGCATATA 1623
|| | || || || ||| |||||||||||||||||| |||||
Sbjct 1613 AACTATAACAATTCCTTTGCATGCTAAAAAAATTAAGAGTTAACATGATGGGTGAATATA 1672
Query 1624 ATA-TGTATAAATGTTGTAGTTTGAGCCTAGGTGTCTTTTGATGTTCATTTCAATCTGAT 1682
|| | ||||| ||||||||| |||||||||||||||||||| ||| ||||||||||| |
Sbjct 1673 -TAATATATAA-TGTTGTAGTCTGAGCCTAGGTGTCTTTTGAGGTTAATTTCAATCTGGT 1730
Query 1683 TTTCTTTT 1690
||||||||
Sbjct 1731 TTTCTTTT 1738
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83533706880
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5