BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496115
Length=1239
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59800.1 | Symbols: MBD7, ATMBD7 | methyl-CPG-binding domain... 1480 0.0
> AT5G59800.1 | Symbols: MBD7, ATMBD7 | methyl-CPG-binding domain
7 | chr5:24094474-24096532 REVERSE LENGTH=1309
Length=1309
Score = 1480 bits (801), Expect = 0.0
Identities = 1105/1240 (89%), Gaps = 67/1240 (5%)
Strand=Plus/Plus
Query 43 CACACTCATCTCGGGTTTTTGGGTTAGACCCGGCAACGAAGCGATGCAGACGAGATCCTC 102
||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 68 CACTCTCGTCTCGGGCTTTTGGGTTAGACCCGGCAACGAAGCGATGCAGACGAGATCCTC 127
Query 103 TTCCTCACCCTCGCCTGACCACCGCCGCGAAAGCCAGCTGCAAATCGCCGATCCCACTTC 162
|||||| || ||| || ||||||||||||||| |||| |||| ||||| |||||||| ||
Sbjct 128 TTCCTCTCCTTCGGCTAACCACCGCCGCGAAACCCAGTTGCAGATCGCGGATCCCACCTC 187
Query 163 GTTTTGCGGCAAGATTTTACCTGGTTGGACCGTCGTGAATCGGCCGCGATCTAGCAGA-A 221
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||| | |
Sbjct 188 GTTTTGCGGCAAGATTATGCCTGGTTGGACCGTCGTGAATCGGCCGCGATCTAGCA-ACA 246
Query 222 ACGGCAG-TGTTGATACGTACTTTATCGAGCCAGGGACTGGTAGACAGTTTTCATCTCTA 280
|||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 247 ACGG-TGTTGTTGATACGTACTTTATCGAGCCAGGGACTGGTAGACAGTTTTCATCACTA 305
Query 281 GAAGCTATTCACAGACACTTGGCTCGAGAAGTAAATGACAAACGTTTGACTCGAGCAGGA 340
|||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||
Sbjct 306 GAAGCTATTCACAGACACTTGGCTGGAGAAGTAAATGACAGACGCTTGACTCGAGCAGGA 365
Query 341 TCCTTCTTCCAGGA-AAGGACTAGGGTTTATGAAGGATTAAGAACCAAACAAAAACAGGA 399
||||| |||||||| || ||| |||||||||||||||| ||||| | | ||||||||
Sbjct 366 TCCTTTTTCCAGGACAA-GACAAGGGTTTATGAAGGATCAAGAA-C---C--AAACAGGA 418
Query 400 TCACCGCAGAGTTGAATATGCCTCCAAAGGTTTCCGATTGCCTAGAGGATGGTCTGTTGA 459
|||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 419 TCACTGCGGAGTTGAATATGCCTCCAAAGGTTTCCGATTGCCTAGAGGATGGTCCGTTGA 478
Query 460 GGAGGTTCCGAGGAAAAACTCTCATTATATTGATAAGTATTATGTTGAGCGAAAAACAGG 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GGAGGTTCCGAGGAAAAACTCTCATTATATTGATAAGTATTATGTTGAGCGAAAAACAGG 538
Query 520 AAAGCGCTTCCGTTCTCTTGTTTCCGTTGAGAGATACTTAAGAGAATCC-GGTAAC-CGT 577
||||||||||||||||||||||||||||||||||||||||||||||||| || ||| | |
Sbjct 539 AAAGCGCTTCCGTTCTCTTGTTTCCGTTGAGAGATACTTAAGAGAATCCCGG-AACTC-T 596
Query 578 ACAGATCAGCAGCTTATGCTTTTACAGAATCGCCGAGGCCATTCCAAAGATTTCAGTTTA 637
| ||| |||||||||| | |||||||||||||||| |||||||||||||||||||| |||
Sbjct 597 ATAGAGCAGCAGCTTAGGGTTTTACAGAATCGCCGTGGCCATTCCAAAGATTTCAGGTTA 656
Query 638 CCTGATGGATGGATCATTGAGGAGAAACCGCGAAGAAATTCCAGTCATATAGACAGGTCT 697
||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 657 CCTGATGGATGGATCGTTGAGGAGAAACCGCGAAGAAGTTCCAGTCATATAGACAGGTCA 716
Query 698 TATATTGAGCCAGGAACAGGGAATAAATTCCGTTCCATGGCAGCCGTTGAGAGATACTTG 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 TATATTGAGCCAGGAACAGGGAATAAATTCCGTTCCATGGCAGCCGTTGAGAGATACTTG 776
Query 758 CA-AGCAGTCGAGAACAGTACAGTTGAC---------ATGGTGCATTCCGAGCGGCTTGC 807
| | |||||| ||||| |||| ||||| ||||||||||| ||||||||| |
Sbjct 777 -ATATCAGTCGGGAACATTACACTTGACTCGGTTTCTATGGTGCATTCGGAGCGGCTTCC 835
Query 808 TCTTCTGATGAACCGGAATGGTACCAGATTTCAGAACGAAGTTATCGACCCAAACCCACC 867
||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||
Sbjct 836 TCTTCTGATGAACCGGAATGGTATCAGATTTCAGAGCGAAGTTATTGACCCAAACCCACC 895
Query 868 GAAGAAAGTTAAGTGGGTCCTTACCGGT-CCAGGCGGAGACAAGTTTACTGCGAATGTAA 926
||||||||| |||||||| ||||||||| || |||||| ||| ||| ||||||||||||
Sbjct 896 GAAGAAAGTAAAGTGGGTTCTTACCGGTTCC-GGCGGAAACATGTTCACTGCGAATGTAC 954
Query 927 GCGGATCGGATGTCTCTAGCTTGGTTAAACAGACATGGTCCGAGGCGTTTGTTTCACTAA 986
|||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct 955 GCGGATCGAATGTCTCTAGCTTGGTTAAACATACATGGTCCGAGGCATTTGTTTCACTGA 1014
Query 987 TCCAAGACCGCTCTTAACCGATATCTGAATCCTAGGTTTATCAATTTGGTTTACGGTTAA 1046
|| |||||||||||||||||| | || | ||||| ||||||| ||||||||||||
Sbjct 1015 TCGAAGACCGCTCTTAACCGA-A-CT-A------GGTTTGTCAATTTAGTTTACGGTTAA 1065
Query 1047 CAAGAGCTAGTTC-A-T----A--CT-TT---G----------G-TCTAGTTTATAACTG 1083
||||||||| ||| | | | || || | | |||||||||||||||
Sbjct 1066 CAAGAGCTAATTCCAGTCGGTAGTCTGTTCAAGTTCATACTTCGGTCTAGTTTATAACTG 1125
Query 1084 ACCCAAATAACCGG-TTTTGCCAAATTTTTCAAGTTCATATTCG-TGTGAACCGGATTTT 1141
|||||||||||||| |||| ||||| ||||||| |||||||||| |||||||||||||||
Sbjct 1126 ACCCAAATAACCGGCTTTT-CCAAAATTTTCAATTTCATATTCGGTGTGAACCGGATTTT 1184
Query 1142 GGTAATTCGTGCAGGTATGTTAGTGCTCATATTAAGTTTGGGGACTTTAAAT-CGGA-TG 1199
||| ||||| ||||||||||||||||||||||||||||||||||||| |||| || | |
Sbjct 1185 GGTTATTCGGGCAGGTATGTTAGTGCTCATATTAAGTTTGGGGACTTAAAATTCGAAGTT 1244
Query 1200 GTGGTGTAGTAAGGTGTAAATAATGGTTGAAATTTTCAAG 1239
|| |||||||||||||||||||||||| ||| || ||||
Sbjct 1245 GTC-TGTAGTAAGGTGTAAATAATGGTTCAAAATTCCAAG 1283
Score = 73.1 bits (39), Expect = 6e-12
Identities = 41/42 (98%), Gaps = 0/42 (0%)
Strand=Plus/Plus
Query 1 CGTTACGTAAAAGCAGTGACAGAGAAATAAGAAGTGTGTGTG 42
|||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 CGTTACGTGAAAGCAGTGACAGAGAAATAAGAAGTGTGTGTG 42
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60893261085
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5