BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496120
Length=924
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59840.1 | Symbols: | Ras-related small GTP-binding family ... 1471 0.0
AT3G46060.1 | Symbols: ARA3, ARA-3, ATRABE1C, ATRAB8A, RAB8A | ... 815 0.0
AT5G03520.1 | Symbols: ATRAB8C, ATRABE1D, ATRAB-E1D, RAB-E1D, R... 442 3e-123
AT4G18800.1 | Symbols: ATHSGBP, ATRAB11B, ATRABA1D, RABA1d | RA... 65.8 7e-10
> AT5G59840.1 | Symbols: | Ras-related small GTP-binding family
protein | chr5:24107215-24109251 REVERSE LENGTH=967
Length=967
Score = 1471 bits (796), Expect = 0.0
Identities = 878/916 (96%), Gaps = 12/916 (1%)
Strand=Plus/Plus
Query 1 TTTCTTCTCTGCTCATTTACTATAACCAACAAGG-----TCTC-T-TC-TCT--TCTCTG 50
|||||||||||||||||||||||||||||||||| |||| | || ||| ||||||
Sbjct 2 TTTCTTCTCTGCTCATTTACTATAACCAACAAGGTCTCTTCTCTTCTCTTCTCCTCTCTG 61
Query 51 CATCATTTTGATCCGATTCAATGGCTGCTCCACCTGCTAGGGCTAGAGCTGATTACGATT 110
||||||||||||||||||| |||||||||||||||||||| |||||||| ||||| ||||
Sbjct 62 CATCATTTTGATCCGATTCGATGGCTGCTCCACCTGCTAGAGCTAGAGCCGATTATGATT 121
Query 111 ATCTCATTAAGCTTCTTCTCATCGGTGATAGCGGTGTGGGTAAAAGTTGTTTGCTTTTAA 170
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 122 ATCTCATTAAGCTTCTTCTCATCGGTGATAGCGGTGTTGGTAAAAGTTGTTTGCTTCTAA 181
Query 171 GGTTCTCTGATGGTTCTTTCACCACTAGCTTCATCACCACCATTGGTATTGATTTTAAGA 230
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 182 GGTTCTCTGATGGCTCTTTCACCACTAGCTTCATCACTACCATTGGTATTGATTTTAAGA 241
Query 231 TAAGAACTATTGAGCTTGATGGCAAACGTATCAAGCTCCAGATTTGGGACACTGCTGGTC 290
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 242 TAAGAACTATTGAGCTTGATGGCAAACGTATCAAGCTTCAGATTTGGGACACTGCTGGTC 301
Query 291 AAGAACGTTTTCGAACCATCACCACTGCTTATTACCGCGGAGCAATGGGGATTTTACTGG 350
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 302 AAGAACGTTTTCGAACCATCACCACTGCTTATTACCGCGGGGCAATGGGGATTTTACTGG 361
Query 351 TGTATGATGTCACAGACGAGTCATCCTTCAACAATATTAGAAACTGGATTCGTAATATCG 410
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 362 TGTATGATGTCACAGACGAGTCATCCTTCAACAACATTAGAAACTGGATTCGTAATATTG 421
Query 411 AACAGCACGCTTCAGATAATGTCAACAAAATCTTGGTAGGGAACAAAGCTGACATGGACG 470
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 422 AACAGCACGCTTCAGATAATGTCAACAAAATCTTGGTAGGAAACAAAGCTGATATGGACG 481
Query 471 AGAGCAAGAGGGCTGTGCCAAAATCAAAGGGTCAAGCTCTTGCTGATGAATATGGAATCA 530
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 482 AGAGCAAGAGGGCTGTGCCAAAATCAAAGGGTCAAGCACTTGCTGACGAATATGGAATCA 541
Query 531 AGTTCTTCGAAACAAGTGCCAAAACAAATCTGAATGTGGAAGAAGTTTTCTTCTCCATAG 590
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 542 AGTTCTTTGAAACAAGTGCCAAAACTAATCTGAATGTGGAAGAAGTTTTCTTCTCCATAG 601
Query 591 CAAAGGACATAAAGCAGAGACTCGCTGATACTGACTCTAGAGCAGAGCCTGCAACGATCA 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 CAAAGGACATAAAGCAGAGACTCGCTGATACTGACTCTAGAGCAGAGCCTGCAACGATCA 661
Query 651 AGATCAGCCAAACAGACCAGGCGGCTGGAGCCGGTCAGGCCACACAGAAGTCTGCATGCT 710
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 662 AGATCAGCCAAACAGACCAGGCTGCTGGAGCCGGACAGGCCACACAGAAGTCTGCATGCT 721
Query 711 GTGGAAGTTAATCAGTCCCAAAAGGCTCTAAAGTTGAAGTGAAGTGAAAA-CAGATTTAT 769
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 722 GTGGAAGTTAATCAGTCCCAAAAGGCTCCAAAGTTGAAGTGAAGTGAAAAACAGATTTAT 781
Query 770 CTTGGGGCGCTTTTGTAtttttttCTCTTTTGATTATTTGTTCTTATTTGACTTCTTCTA 829
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 782 CTTGGGGTGCTTTTGTATTTTTTTTTCTTTTGATTATTTGTTCTTATTTGACTTCTTCTA 841
Query 830 GTTTGTTCATGAGGGTAATAGAATCTTT-AAGAAATTGTTCGTTCTCAGACAGATTCGAT 888
|||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||
Sbjct 842 GTTTGTTCATGAGGGTAATAGAATCTTTTAAGAAATTTTTCCTTCTCAGACAGATTCGAT 901
Query 889 ATCACAGAAGCTGAAT 904
|||||||||||||||
Sbjct 902 GTCACAGAAGCTGAAT 917
> AT3G46060.1 | Symbols: ARA3, ARA-3, ATRABE1C, ATRAB8A, RAB8A
| RAB GTPase homolog 8A | chr3:16917589-16920018 FORWARD LENGTH=1132
Length=1132
Score = 815 bits (441), Expect = 0.0
Identities = 588/661 (89%), Gaps = 2/661 (0%)
Strand=Plus/Plus
Query 62 TCCGATTCAATGGCTGCTCCACCTGCTAGGGCTAGAGCTGATTACGATTATCTCATTAAG 121
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 195 TCCGATTCAATGGCTGCTCCACCTGCTAGAGCCAGAGCTGATTACGATTATCTCATTAAG 254
Query 122 CTTCTTCTCATCGGTGATAGCGGTGTGGGTAAAAGTTGT-TTGCTTTTAAGGTTCTCTGA 180
|||||| | || || ||||||||||| |||||||||||| || ||| || | ||||||||
Sbjct 255 CTTCTTTTGATTGGAGATAGCGGTGTTGGTAAAAGTTGTCTT-CTTCTACGTTTCTCTGA 313
Query 181 TGGTTCTTTCACCACTAGCTTCATCACCACCATTGGTATTGATTTTAAGATAAGAACTAT 240
||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||||| ||
Sbjct 314 TGGATCTTTCACCACTAGCTTCATTACCACCATTGGCATTGACTTTAAGATAAGAACGAT 373
Query 241 TGAGCTTGATGGCAAACGTATCAAGCTCCAGATTTGGGACACTGCTGGTCAAGAACGTTT 300
||||||||| || |||||||||||||| ||||||||||| || ||||||||||| || ||
Sbjct 374 TGAGCTTGACGGTAAACGTATCAAGCTTCAGATTTGGGATACCGCTGGTCAAGAGCGGTT 433
Query 301 TCGAACCATCACCACTGCTTATTACCGCGGAGCAATGGGGATTTTACTGGTGTATGATGT 360
||| || |||||||||||||||||||| || |||||||| ||||| ||||||||||||||
Sbjct 434 TCGGACTATCACCACTGCTTATTACCGTGGGGCAATGGGCATTTTGCTGGTGTATGATGT 493
Query 361 CACAGACGAGTCATCCTTCAACAATATTAGAAACTGGATTCGTAATATCGAACAGCACGC 420
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||
Sbjct 494 CACAGACGAGTCATCCTTCAACAACATTAGGAACTGGATTCGTAATATCGAACAGCATGC 553
Query 421 TTCAGATAATGTCAACAAAATCTTGGTAGGGAACAAAGCTGACATGGACGAGAGCAAGAG 480
||| |||||||| ||||| ||||||||||||||||| ||||||||||| || ||||||||
Sbjct 554 TTCGGATAATGTTAACAAGATCTTGGTAGGGAACAAGGCTGACATGGATGAAAGCAAGAG 613
Query 481 GGCTGTGCCAAAATCAAAGGGTCAAGCTCTTGCTGATGAATATGGAATCAAGTTCTTCGA 540
||| || || | | |||||||||| |||||||||||||| || ||||| |||||||||||
Sbjct 614 GGCAGTACCTACAGCAAAGGGTCAGGCTCTTGCTGATGAGTACGGAATTAAGTTCTTCGA 673
Query 541 AACAAGTGCCAAAACAAATCTGAATGTGGAAGAAGTTTTCTTCTCCATAGCAAAGGACAT 600
|||||||||||| ||||| || || |||||||||||||||||||| |||| | ||||||
Sbjct 674 AACAAGTGCCAAGACAAACCTAAACGTGGAAGAAGTTTTCTTCTCAATAGGGAGGGACAT 733
Query 601 AAAGCAGAGACTCGCTGATACTGACTCTAGAGCAGAGCCTGCAACGATCAAGATCAGCCA 660
|||||||| || | || || ||||| || ||||||||||||||||||||||| |||||
Sbjct 734 TAAGCAGAGGCTTTCAGACACCGACTCGAGGGCAGAGCCTGCAACGATCAAGATAAGCCA 793
Query 661 AACAGACCAGGCGGCTGGAGCCGGTCAGGCCACACAGAAGTCTGCATGCTGTGGAAGTTA 720
||| ||||| || |||||||| || |||||||||||||| |||||||||||||||| |||
Sbjct 794 AACGGACCAAGCAGCTGGAGCAGGGCAGGCCACACAGAAATCTGCATGCTGTGGAACTTA 853
Query 721 A 721
|
Sbjct 854 A 854
> AT5G03520.1 | Symbols: ATRAB8C, ATRABE1D, ATRAB-E1D, RAB-E1D,
RAB8C | RAB GTPase homolog 8C | chr5:883447-885425 FORWARD
LENGTH=1150
Length=1150
Score = 442 bits (239), Expect = 3e-123
Identities = 461/567 (81%), Gaps = 19/567 (3%)
Strand=Plus/Plus
Query 107 GATTATCTCATTAAGCTTCTTCTCATCGGTGATAGCGGTGTGGGTAAAAGTTGTTTGCTT 166
||||| ||||| ||||||||||||||||| |||||||||||||| || ||||||||| ||
Sbjct 269 GATTACCTCATCAAGCTTCTTCTCATCGGCGATAGCGGTGTGGGGAAGAGTTGTTTG-TT 327
Query 167 --TTAAGGTTCTCTGATGGTTCTTTCACCACTAGCTTCATCACCACCATTGGTATTGATT 224
|| | ||||| |||| | ||||||| || || ||||| || |||||||||||||| |
Sbjct 328 ACTT-CGATTCTCAGATGATACTTTCACTACAAGTTTCATTACTACCATTGGTATTGACT 386
Query 225 TTAAGATAAGAACTATTGAGCTTGATGGCAAACGTATCAAGCTCCAGATTTGGGACACTG 284
| |||||||||||| |||| |||||||| || |||||||| | ||||||||||||||||
Sbjct 387 TCAAGATAAGAACTGTTGAACTTGATGGGAAGCGTATCAAATTGCAGATTTGGGACACTG 446
Query 285 CTGGTCAAGAACGTTTTC-GAACCATCACCACTGCTTATTACCGCGGAGCAATGGGGATT 343
|||||||||||||||| | |||| ||||| || || |||||| | ||||| ||||| ||
Sbjct 447 CTGGTCAAGAACGTTT-CAGAACTATCACTACAGCGTATTACAGGGGAGCGATGGGTATA 505
Query 344 TTACTGGTGTATGATGTCACAGACGAGTCATCCTTCAACAATATTAGAAACTGGATTC-G 402
|| || || || ||||| || || |||||||| || ||||||||||| |||||||| |
Sbjct 506 TTGCTTGTCTACGATGTAACGGATGAGTCATCTTTTAACAATATTAGGAACTGGATGAAG 565
Query 403 TAATATCGAACAGCACGCTTCAGATAATGTCAACAAAATCTTGGTAGGGAACAAAGCTGA 462
|| || || || || || |||||||||||||||||||| ||||| || |||||||||||
Sbjct 566 -AACATTGAGCAACATGCCTCAGATAATGTCAACAAAATATTGGTTGGTAACAAAGCTGA 624
Query 463 CATGGACGAGAGCAAGAGGGCTGTGCCAAAATCAAAGGGTCAAGCTCTTG-CTGATGAAT 521
||||| || ||||| |||||||| |||| | ||||||| |||||| ||| ||||||| |
Sbjct 625 TATGGATGAAAGCAAAAGGGCTGTTCCAACAGCAAAGGGCCAAGCT-TTGGCTGATGAGT 683
Query 522 ATGGAATCAAGTTCTTCGAAACAAGTGCCAAAACAAATCTGAATGTGGAAGAA-GTTTTC 580
|||||||||| ||||| || || ||||| |||||||| || ||||| ||| || ||||||
Sbjct 684 ATGGAATCAAATTCTTTGAGACGAGTGCAAAAACAAACCTCAATGTCGAA-AATGTTTTC 742
Query 581 TTCTCCATAGCAAAGGACATAAAGCAGAGACTCG-CTGATACTGACTCTAGAG-CAGAGC 638
| || || ||||| |||||||| || ||| | | | || || ||| | | || ||||||
Sbjct 743 ATGTCAATCGCAAAAGACATAAAACAAAGATT-GACAGAAACCGACACGA-AGGCAGAGC 800
Query 639 CTGCAACG-ATCAAGATCAGCCAAACA 664
| ||| | |||||||||| | |||||
Sbjct 801 CC-CAAGGCATCAAGATCA-CTAAACA 825
> AT4G18800.1 | Symbols: ATHSGBP, ATRAB11B, ATRABA1D, RABA1d |
RAB GTPase homolog A1D | chr4:10319862-10321551 REVERSE LENGTH=1151
Length=1151
Score = 65.8 bits (35), Expect = 7e-10
Identities = 67/82 (82%), Gaps = 3/82 (4%)
Strand=Plus/Plus
Query 254 AAACGT-ATC-AAGCTCCAGATTTGGGACACTGCTGGTCAAGAACGTTTTCGAACCATCA 311
||| || ||| |||| |||||||||||||||||||||||||||| | | ||| | ||||
Sbjct 389 AAAAGTCATCAAAGC-CCAGATTTGGGACACTGCTGGTCAAGAAAGATACCGAGCAATCA 447
Query 312 CCACTGCTTATTACCGCGGAGC 333
| | |||||| || || |||||
Sbjct 448 CTAGTGCTTACTATCGAGGAGC 469
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45160498153
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5