BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496121
Length=611
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59845.1 | Symbols: | Gibberellin-regulated family protein ... 773 0.0
> AT5G59845.1 | Symbols: | Gibberellin-regulated family protein
| chr5:24111324-24112020 FORWARD LENGTH=601
Length=601
Score = 773 bits (418), Expect = 0.0
Identities = 554/616 (90%), Gaps = 23/616 (4%)
Strand=Plus/Plus
Query 1 TCCCAAACCATCACTCCTTTTGCATTGTGTGGAAA-CTTCGAGTTTTTTCTTCATCTTCT 59
|||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||
Sbjct 2 TCCCAAACCATCACTCCTTTTGCATTGTGT-GAAACCTTCGAGTTTTCTCTTCATCTTCT 60
Query 60 CAAAGTAACAAACTTTGTCCAAACAGATTATTAAAAACAACCAAATCTCATCAAGAACTA 119
|||||||||||||||| |||||||||||||||| || || | |||||||||||||||||
Sbjct 61 CAAAGTAACAAACTTTCTCCAAACAGATTATTATTAA-AA-C-AATCTCATCAAGAACTA 117
Query 120 AGATGAAGTTCCAGGTTGTACAATTTATTATTATCTCTCTTCTCCTCACATCTTCTTTGT 179
|||||| |||| || |||| || || ||||||||||||||||| |||||||||||||||
Sbjct 118 CGATGAAATTCCCGGCTGTAAAAGTTCTTATTATCTCTCTTCTCATCACATCTTCTTTGT 177
Query 180 TCATGCTCTCAACCGCCGATTCGTCACCATGCGGCGGAAAATGCAACGTGAGATGTTCAA 239
|||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 178 TCATACTCTCAACCGCGGATTCGTCACCATGCGGAGGAAAATGCAACGTGAGATGTTCAA 237
Query 240 AGGCAGGAAGACAAGATCGGTGTCTCAAGTATTGCAATATATGTTGCGAGAAGTGTAATT 299
||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
Sbjct 238 AGGCAGGAAGACAAGATAGGTGTCTCAAGTATTGTAATATATGTTGCGAGAAGTGTAACT 297
Query 300 ATTGTGTTCCTTCAGGCACTTATGGAAACAAAGATGAGTGCCCTTGTTACCGCGATATGA 359
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 298 ATTGTGTTCCTTCAGGCACTTATGGAAACAAAGATGAATGCCCTTGTTACCGCGATATGA 357
Query 360 AGAACTCCAAAGGCACATCCAAATGTCCTTGAACATGTTCTGAAGATTATCCTTATAGAC 419
|||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 358 AGAACTCCAAAGGCACGTCCAAATGTCCTTGATCATGTTCTTAAGATTATCCTTATAGAC 417
Query 420 ACAATATCCACATTTATATCTAGAAATGTTAAGATTGTGCTTGCTGCATAAAATAATTAG 479
|||||||| || ||||||||||||||||||||| ||| ||||||||| ||
Sbjct 418 ACAATATC----TT--------GAAATGTTAAGATTGTGCTTGATGCCTAAAATAATGAG 465
Query 480 CTTGAGATACTTTTTATCTATGAATATGTGAAAGATCGTAGACAATAAAATGATTT-ATG 538
|||||||||||| | || ||||||||||||||||| | |||||||||||||||| |||
Sbjct 466 CTTGAGATACTTCT-ATGAATGAATATGTGAAAGATTTT-GACAATAAAATGATTTGATG 523
Query 539 TATTAAAATATTATGAGTGACGTTATATATACGTG--TGT-GTATGAATTATACATTGTA 595
|||||||||||| | ||||| ||||||||| | || ||||||| |||||||||||
Sbjct 524 TATTAAAATATTCTTAGTGAAGTTATATATGTATAAATGAAGTATGAAATATACATTGTA 583
Query 596 TGTTGCTTTACATGAG 611
||||||||||||||||
Sbjct 584 TGTTGCTTTACATGAG 599
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29437210142
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5