BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496124
Length=828
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59880.1 | Symbols: ADF3 | actin depolymerizing factor 3 | c... 1199 0.0
AT5G59890.1 | Symbols: ADF4, ATADF4 | actin depolymerizing fact... 436 1e-121
> AT5G59880.1 | Symbols: ADF3 | actin depolymerizing factor 3 |
chr5:24120231-24121894 FORWARD LENGTH=837
Length=837
Score = 1199 bits (649), Expect = 0.0
Identities = 775/834 (93%), Gaps = 16/834 (2%)
Strand=Plus/Plus
Query 1 ATGTTTGCTTATTCGGACTAGAGAGC-TCCGCATAAAGCTGAGGAAAAGAAAGAGAGAAG 59
|||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 1 ATGTTTACTTATTCGGACTAGAGAGCTTCCGCATAAAGCTGAGGAAAAAAAAGAGAGAAG 60
Query 60 ACGCACACCGAAGAAAA-ACACAAGACTTCTTTATTCTCCTGCTTCTTCTTCGTCTCTTC 118
||||||||||||||||| |||||||||| | ||||||||||| |||||||||||||||
Sbjct 61 ACGCACACCGAAGAAAACACACAAGACTCCATTATTCTCCTG---CTTCTTCGTCTCTTC 117
Query 119 AATAATTTTCTCTGAGACTAGCTTTGATTCAGCCATGGCTAATGCAGCATCAGGAATGGC 178
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 118 AATTATTTTCTCTGAGACTAGCTTTGATTCAACCATGGCTAATGCAGCATCAGGAATGGC 177
Query 179 AGTCCATGATGACTGCAAGCTGAAATTTATGGAGCTGAAGACGAAAAGGACATATCGTTT 238
||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||
Sbjct 178 AGTCCATGATGACTGCAAGCTGAAATTTATGGAATTGAAGACGAAAAGGACACACCGTTT 237
Query 239 CATCGTTTACAAGATTGAGGAGCAGCAGAAACAAGTGGTTGTTGAGAAAATCGGTGAACC 298
|||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 238 CATCATTTACAAGATTGAGGAGCTGCAGAAACAAGTGATTGTTGAGAAAATCGGTGAACC 297
Query 299 TGCTGACACCCATGAGGCCCTTGCTGCATGTCTTCCAGCTGATGAATGTCGCTATGCCGT 358
| | | |||||||||| |||||||||| ||||||||||||||||||| ||||||||| |
Sbjct 298 GGGTCAAACCCATGAGGACCTTGCTGCAAGTCTTCCAGCTGATGAATGCCGCTATGCCAT 357
Query 359 TTTCGATTTTGATTTTCTCACTGCAGAGGATGTCCCAAAGAGCAGGATTTTCTTT-GTAG 417
|||||||||||||||| ||| | | |||| |||||||| |||||||||||| ||| || |
Sbjct 358 TTTCGATTTTGATTTTGTCAGTTCTGAGGGTGTCCCAAGGAGCAGGATTTT-TTTCGTGG 416
Query 418 CATGGTCTCCGGACACAGCAAAAGTGAGAAGCAAAATGATCTATGCGAGCTCTAAGGACA 477
||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||
Sbjct 417 CATGGTCTCCGGACACAGCAAGAGTGAGAAGCAAGATGATCTATGCGAGCTCCAAGGACA 476
Query 478 GGTTCAAGAGAGAACTAGACGGAATTCAGATCGAGCTTCAGGCAACCGATCCAACCGAGA 537
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 477 GGTTCAAGAGAGAACTAGACGGAATTCAGGTCGAGCTTCAGGCAACCGATCCAACCGAGA 536
Query 538 TGGATCTTGATGTTTTCAAAAGCCGAGCCACTTGATGAA-GAATTCCCCTGAAAATTTCG 596
|||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||
Sbjct 537 TGGATCTTGATGTTTTCAAAAGCCGAGCCAATTGATGAAAGAAATCCCCTGAAAATTTCG 596
Query 597 GTTGAATCAAACTTTTTTCGTACTATTTACTCAGTGATGCTTTTTCTTGAAGTTTGCTGT 656
||||||||||||||||| ||||||||| |||||||||||||||||| | |||||||||||
Sbjct 597 GTTGAATCAAACTTTTT-CGTACTATT-ACTCAGTGATGCTTTTTCCTAAAGTTTGCTGT 654
Query 657 GACGGTACCAACCTAAACAGCTTCATTTTATTA-TC-GGTCTTTGGTCTTTGTCTTCGGT 714
|||||||||||||| |||||||||||||||| | | |||||||| |||||||||| |||
Sbjct 655 GACGGTACCAACCTGAACAGCTTCATTTTATCAGTTTGGTCTTTG-TCTTTGTCTTTGGT 713
Query 715 CTCtttttttGTGTCCTTATACTGTTGTCTTAAAACTTAAGGAATCTGGCTTGTGCTCTT 774
||| ||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 714 CTCCTTTTTGG-GTCCTTATAGTGTTGTCTTAAAACTTAAGGAATCTGGCTTGTGCTCTT 772
Query 775 TTACCATTGTGGAAGAAACTCGAACCCTTTATTAAACAAGAATCCTATTGGCAC 828
| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 773 T-ACCATTGTGGAAGAAA-TCGAACCCTTTATTAAACAAGAATCCTATTGGCAC 824
> AT5G59890.1 | Symbols: ADF4, ATADF4 | actin depolymerizing factor
4 | chr5:24122412-24123912 FORWARD LENGTH=869
Length=869
Score = 436 bits (236), Expect = 1e-121
Identities = 379/447 (85%), Gaps = 13/447 (3%)
Strand=Plus/Plus
Query 122 AATTTTCTCTGAGACTAGCTTTGATTCAGCCATGGCTAATGCAGCATCAGGAATGGCAGT 181
|||| ||||||| || | ||||||||||||||||||||||| || ||||||||||||||
Sbjct 104 AATTGTCTCTGACAC-CGTTTTGATTCAGCCATGGCTAATGCTGCGTCAGGAATGGCAGT 162
Query 182 CCATGATGACTGCAAGCTGAA-ATTTATGGAGCTGAAGACGAAAAGGACATATCGTTTCA 240
|||||||||||||||||| || |||| |||| |||||| ||||||||||| | |||||||
Sbjct 163 CCATGATGACTGCAAGCT-AAGATTTCTGGAACTGAAGGCGAAAAGGACACACCGTTTCA 221
Query 241 TCGTTTACAAGATTGAGGAGCAGCAGAAACAAGTGGTTGTTGAGAAAATCGGTGAACCTG 300
| || ||||||||||||||| ||||||| |||||| ||||||||||| | |||||||||
Sbjct 222 TTGTCTACAAGATTGAGGAGAAGCAGAAGCAAGTGATTGTTGAGAAAGTTGGTGAACCTA 281
Query 301 --CTGACACCCATGAGGCCCTTGCTGCATGTCTTCCAGCTGATGAATGTCGCTATGCCGT 358
|| | || | |||| | |||| ||| ||||||||||||| ||||| || || ||| |
Sbjct 282 TTCT-A-ACTTACGAGGACTTTGCAGCAAGTCTTCCAGCTGACGAATGCCGATACGCCAT 339
Query 359 TT-TCGATTTTGATTTTCTCACTGCAGAGGATGTCCCA-AAGAGCAGGATTTTCTTTGTA 416
|| | ||||| || ||| ||||||||||| || | ||| ||||||| ||||||||| |
Sbjct 340 TTAT-GATTTCGACTTTGTCACTGCAGAGAAT-TGCCAGAAGAGCAAGATTTTCTTCATT 397
Query 417 GCATGGTCTCCGGACACAGCAAAAGTGAGAAGCAAAATGATCTATGCGAGCTCTAAGGAC 476
||||||| ||| ||| |||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 398 GCATGGTGTCCCGACGTAGCAAAGGTGAGAAGCAAGATGATCTATGCGAGCTCTAAGGAC 457
Query 477 AGGTTCAAGAGAGAACTAGACGGAATTCA-GATCGAGCTTCAGGCAACCGATCCAACCGA 535
||||||||| | ||||| || |||||||| | | |||||||| ||||| |||||||| ||
Sbjct 458 AGGTTCAAGCGTGAACTTGATGGAATTCAAG-TGGAGCTTCAAGCAACTGATCCAACTGA 516
Query 536 GATGGATCTTGATGTTTTCAAAAGCCG 562
|||||||||||||||||| ||||||||
Sbjct 517 GATGGATCTTGATGTTTTGAAAAGCCG 543
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40338020041
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5