BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496128
Length=698
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59910.1 | Symbols: HTB4 | Histone superfamily protein | chr... 957 0.0
AT3G45980.1 | Symbols: H2B, HTB9 | Histone superfamily protein ... 492 2e-138
AT3G46030.1 | Symbols: HTB11 | Histone superfamily protein | ch... 429 2e-119
AT2G37470.1 | Symbols: | Histone superfamily protein | chr2:15... 302 4e-81
AT1G07790.1 | Symbols: HTB1 | Histone superfamily protein | chr... 298 5e-80
> AT5G59910.1 | Symbols: HTB4 | Histone superfamily protein | chr5:24127128-24127935
FORWARD LENGTH=808
Length=808
Score = 957 bits (518), Expect = 0.0
Identities = 645/702 (92%), Gaps = 26/702 (4%)
Strand=Plus/Plus
Query 1 ATCAAGCAATCCAAAGCCATT-TA---AC-C--TCTCAGATCTCGTTAAACCTAGAAACC 53
||||||||||||||||| ||| | || | |||||||||||||||||||||||||||
Sbjct 1 ATCAAGCAATCCAAAGCGATTAAACCTACTCAATCTCAGATCTCGTTAAACCTAGAAACC 60
Query 54 TCGAG--AATCCGAATCAATGGCGCCGAAAGCAGAGAAGAAGCCCGCTGAGAAGAAACCA 111
||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCGAGAAAAACCGTATCAATGGCGCCGAAAGCAGAGAAGAAGCCCGCTGAGAAGAAACCA 120
Query 112 GCCTCCGAGAAGCCGGTGGAGGAGAAATCAAAAGCCGAGAAAGCTCCGGCGGAGAAGAAA 171
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCTTCCGAGAAGCCGGTGGAGGAGAAATCAAAAGCCGAGAAAGCTCCGGCGGAGAAGAAA 180
Query 172 CCAAAGGCCGGAAAGAAACTCCCGAAGGAGGCTGGTGCTGGAGGTGACAAGAAGAAAAAG 231
||||||||||||||||| ||||||||||| |||||||| ||||| |||||||||||||||
Sbjct 181 CCAAAGGCCGGAAAGAAGCTCCCGAAGGAAGCTGGTGCCGGAGGCGACAAGAAGAAAAAG 240
Query 232 ATGAAGAAGAAGAGTATCGAGACTTACAAGATCTACATCTTCAAGGTGCTTAAGCAAGTT 291
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATGAAGAAGAAGAGTGTCGAGACTTACAAGATCTACATCTTCAAGGTGCTTAAGCAAGTT 300
Query 292 CATCCCGATATCGGAATCTCAAGCAAAGCGATGGGGATTATGAACAGTTTCATCAACGAT 351
|||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct 301 CATCCCGATATCGGAATCTCCAGCAAAGCGATGGGGATCATGAACAGTTTCATTAACGAT 360
Query 352 ATCTTCGAGAAGCTTGCTCAAGAGGCGTCGAAGCTTGCGAGGTACAATAAGAAACCTACT 411
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATCTTCGAGAAGCTTGCTCAAGAGGCGTCGAAGCTTGCGAGGTACAATAAGAAACCTACG 420
Query 412 ATCACGTCCCGGGAGATTCAGACTGCTGTGAGATTGGTGCTTCCTGGAGAGTTGGCGAAG 471
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ATCACTTCTCGGGAGATTCAGACTGCTGTGAGATTGGTGCTTCCTGGAGAGTTGGCGAAG 480
Query 472 CATGCTGTTTCTGAGGGGACTAAGGCGGTTACCAAATTCACCAGCTCTTGAATAATTGAG 531
||||| ||||||||||||||||| || || || |||||||||||||||||||||||||||
Sbjct 481 CATGCCGTTTCTGAGGGGACTAAAGCCGTCACGAAATTCACCAGCTCTTGAATAATTGAG 540
Query 532 TTAGGGtttttttCTCTCTTATCATCTGGATGTTGCT--GCTTTAGGGTTAATGGAATTT 589
|||||||| || | ||||| ||||||||||| |||||||||||||||||||||
Sbjct 541 TTAGGGTT-----CT-T---ATCATATGGATGTTGCTCTGCTTTAGGGTTAATGGAATTT 591
Query 590 GGGAGAACTGAATTAGGGTTGTTAGATTGTCCTTTAAGTATCT--GTTTCGTTTGCAATT 647
|| ||| |||| |||||||| ||||| |||||||||||||||| |||||||||| ||||
Sbjct 592 GGAAGATCTGAGTTAGGGTT-TTAGAATGTCCTTTAAGTATCTCTGTTTCGTTTGGAATT 650
Query 648 TTTACGTTTTGTAAGTACTTCTGCTGCTATTGCTTATATTTG 689
| ||||||||||||||||| |||||||||| | || ||||
Sbjct 651 TCTACGTTTTGTAAGTACT---GCTGCTATTGATAATGTTTG 689
> AT3G45980.1 | Symbols: H2B, HTB9 | Histone superfamily protein
| chr3:16897287-16898013 REVERSE LENGTH=727
Length=727
Score = 492 bits (266), Expect = 2e-138
Identities = 406/475 (85%), Gaps = 4/475 (1%)
Strand=Plus/Plus
Query 68 CAATGGCGCCGAAAGCAGAGAAGAAGCCCGCTGAGAAGAAACCAGCCTCCGAGAAGCCGG 127
|||||||||||| |||||||||||||||||| ||||||||||||||| ||||||| || |
Sbjct 68 CAATGGCGCCGAGAGCAGAGAAGAAGCCCGCGGAGAAGAAACCAGCCGCCGAGAAACCAG 127
Query 128 TGGAGGAGAAATCAAAAGCCGAGAAAGCTCCGGCGGAGAAGAAACCAAAGGCCGGAAAGA 187
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 128 TAGAGGAGAAATCAAAAGCCGAGAAAGCTCCGGCGGAGAAGAAACCAAAAGCCGGCAAGA 187
Query 188 AACTCCCGAAGGAGGCTGGTGCTGGAGGTGACAAGAAGAAAAAGATGAAGAAGAAGAGTA 247
||||||||||||| || || || || || || |||||||| ||||||||||||||||||
Sbjct 188 AACTCCCGAAGGAAGCCGGGGCCGGCGGCGATAAGAAGAAGAAGATGAAGAAGAAGAGTG 247
Query 248 TCGAGACTTACAAGATCTACATCTTCAAGGTGCTTAAGCAAGTTCATCCCGATATCGGAA 307
| || |||||||||||||||||||||||||| || || ||||||||||| ||||| || |
Sbjct 248 TGGAAACTTACAAGATCTACATCTTCAAGGTTCTGAAACAAGTTCATCCAGATATTGGTA 307
Query 308 TCTCAAGCAAAGCGATGGGGATTATGAACAGTTTCATCAACGATATCTTCGAGAAGCTTG 367
| |||||||| || ||||| ||||||||||||||||||||||| ||||||||||| |||
Sbjct 308 TTTCAAGCAAGGCTATGGGTATTATGAACAGTTTCATCAACGACATCTTCGAGAAA-TTG 366
Query 368 -C-TCAAGAGGCGTCGAAGCTTGCGAGGTACAATAAGAAACCTACTATCACGTCCCGGGA 425
| || || | || ||||| || ||||| || ||||| || || || || || |||||
Sbjct 367 GCATCG-GAATCTTCAAAGCTCGCTAGGTATAACAAGAAGCCGACGATTACTTCTCGGGA 425
Query 426 GATTCAGACTGCTGTGAGATTGGTGCTTCCTGGAGAGTTGGCGAAGCATGCTGTTTCTGA 485
||||||||||||||| ||| | || |||||||| ||| | || || || |||||||||||
Sbjct 426 GATTCAGACTGCTGTTAGACTCGTTCTTCCTGGTGAGCTCGCTAAACACGCTGTTTCTGA 485
Query 486 GGGGACTAAGGCGGTTACCAAATTCACCAGCTCTTGAATAATTGAGTTAGGGttt 540
|| || ||||| |||||||||||||| ||||||||||| | | | |||||||||
Sbjct 486 AGGAACCAAGGCTGTTACCAAATTCACAAGCTCTTGAATTAGTAAATTAGGGTTT 540
> AT3G46030.1 | Symbols: HTB11 | Histone superfamily protein |
chr3:16913448-16914131 REVERSE LENGTH=684
Length=684
Score = 429 bits (232), Expect = 2e-119
Identities = 352/410 (86%), Gaps = 8/410 (2%)
Strand=Plus/Plus
Query 119 AGAAGCCGGTGGAGGAGAAATCAAAAGCCGAGAAAGCTCCGGCGGAGAAGAAACCAAAGG 178
|||| || || ||||||||||||||||||||||||||||| || |||||||||||||| |
Sbjct 115 AGAAACCAGTAGAGGAGAAATCAAAAGCCGAGAAAGCTCCTGCAGAGAAGAAACCAAAAG 174
Query 179 CCGGAAAGAAACTCCCGAAGGAGGCTGGTGCTGGAGGTGACAAGAAGAAAAAGATGAAGA 238
|||| ||||||||||||||||| || ||||| || || || |||||||| ||||||||||
Sbjct 175 CCGGCAAGAAACTCCCGAAGGAAGCCGGTGCCGGCGGCGATAAGAAGAAGAAGATGAAGA 234
Query 239 AGAAGAGTATCGAGACTTACAAGATCTACATCTTCAAGGTGCTTAAGCAAGTTCATCCCG 298
|||||||| | ||||| ||||||||||||||||||||||| || || ||||||||||| |
Sbjct 235 AGAAGAGTGTTGAGACGTACAAGATCTACATCTTCAAGGTTCTGAAACAAGTTCATCCAG 294
Query 299 ATATCGGAATCTCAAGCAAAGCGATGGGGATTATGAACAGTTTCATCAACGATATCTTCG 358
|||| || || ||||||||||| ||||||||||||||||||||||||||||| ||||| |
Sbjct 295 ATATTGGTATTTCAAGCAAAGCTATGGGGATTATGAACAGTTTCATCAACGACATCTTTG 354
Query 359 AGAAGCTTG-C-TCAAGAGGCGTCGAAGCTTGCGAGGTACAATAAGAAACCTACTATCAC 416
|||| ||| | || || |||||||||| |||||||| |||||||| || || || ||
Sbjct 355 AGAAA-TTGGCATCG-GAATCGTCGAAGCTCGCGAGGTATAATAAGAAGCCGACGATTAC 412
Query 417 GTCCCGGGAGATTCAGACTGCTGTGAGA-TTGGTGCTTCCTGGAGAG-TTGGCGAAGCAT 474
|| |||||||||||||||||||| ||| ||| | |||||||| ||| ||| |||| |||
Sbjct 413 TTCTCGGGAGATTCAGACTGCTGTTAGACTTGTT-CTTCCTGGTGAGCTTG-CGAAACAT 470
Query 475 GCTGTTTCTGAGGGGACTAAGGCGGTTACCAAATTCACCAGCTCTTGAAT 524
||||||||||| || ||||||||||| || || || || |||||||||||
Sbjct 471 GCTGTTTCTGAAGGAACTAAGGCGGTGACTAAGTTTACTAGCTCTTGAAT 520
> AT2G37470.1 | Symbols: | Histone superfamily protein | chr2:15736764-15737368
FORWARD LENGTH=605
Length=605
Score = 302 bits (163), Expect = 4e-81
Identities = 310/379 (82%), Gaps = 17/379 (4%)
Strand=Plus/Plus
Query 144 AGCCGAGAAAGCTCCGGCGGAGAAGA-AACCAAAGGCCGGA-AAGAAACTCCCG-AAGGA 200
||||| |||||||||||||||||| | ||||||| |||| |||||| | | | || ||
Sbjct 113 AGCCGGGAAAGCTCCGGCGGAGAA-ACTCCCAAAGG-CGGAGAAGAAAAT-CAGCAAAGA 169
Query 201 GGCTGGTGCTGGAGGTGACAAGAAGAAAAAGATGAA--GAAGAAGAGTATCGAGACTTAC 258
|| | | ||| | || |||||||| |||| || ||||||||| |||||||||||
Sbjct 170 CGC-CG-G-AGGAAGCGAGAAGAAGAAGAAGA--AATCGAAGAAGAGCGTCGAGACTTAC 224
Query 259 AAGATCTACATCTTCAAGGTGCTTAAGCAAGTTCATCCCGATATCGGAATCTCAAGCAAA 318
|||||||||||||||||||| || || ||||||||||| ||| | |||||||| | |||
Sbjct 225 AAGATCTACATCTTCAAGGTTCTGAAACAAGTTCATCCAGATGTTGGAATCTCTGGGAAA 284
Query 319 GCGATGGGGATTATGAACAGTTTCATCAACGATATCTTCGAGAAGCTTGCTCAAGAGGCG 378
|| |||||||||||||||||||||||||| || ||||||||||| |||||||| || ||
Sbjct 285 GCTATGGGGATTATGAACAGTTTCATCAATGACATCTTCGAGAAACTTGCTCAGGAATCG 344
Query 379 TCGAAGCTTGCGAGGTACAATAAGAAACCTACTATCACGTCCCGGGAGATTCAGACTGCT 438
|| ||||| || |||||||||||||| || || || || || |||||||||| || |||
Sbjct 345 TCAAAGCTCGCTAGGTACAATAAGAAGCCGACGATTACATCGAGGGAGATTCAAACCGCT 404
Query 439 GTGAGA-TTGGTGCTT-CCTGGAGAGTTGGCGAAGCATGCTGTTTCTGAGGGGACTAAGG 496
|||||| ||| || || |||||||| | || || ||||| |||||||| || || ||||
Sbjct 405 GTGAGACTTG-TG-TTGCCTGGAGAACTCGCTAAACATGCGGTTTCTGAAGGCACGAAGG 462
Query 497 CGGTTACCAAATTCACCAG 515
|||||||||||||||||||
Sbjct 463 CGGTTACCAAATTCACCAG 481
> AT1G07790.1 | Symbols: HTB1 | Histone superfamily protein | chr1:2412980-2413708
FORWARD LENGTH=729
Length=729
Score = 298 bits (161), Expect = 5e-80
Identities = 385/488 (79%), Gaps = 35/488 (7%)
Strand=Plus/Plus
Query 70 ATGGCGCCGAA-AGCAGAGAAGAAGCCCGCTGAG-AAGAAACCAGCCTCCGAGAAG-CCG 126
||||| || || ||| |||||||||||||| ||| || ||||| ||| | ||| || |||
Sbjct 70 ATGGCACC-AAGAGCCGAGAAGAAGCCCGCCGAGAAAAAAACC-GCCGCTGAG-AGACCG 126
Query 127 GTGGAGGAGAAATCAAAAGC--C-GAGAAA-GCTCCGGCGGAGAAGAAACCAAAGGCCGG 182
||||| ||| || | || || | || ||| |||||||||||||||||||| ||||| ||
Sbjct 127 GTGGAAGAG-AA-C-AAGGCTGCTGA-AAAGGCTCCGGCGGAGAAGAAACCCAAGGCGGG 182
Query 183 AAAGAAACT--C-CCGAAGGAGGCTGGTGCTGGAGGTGACAAGAAGAA-AA-AGAT-GAA 236
|||||| | | || ||||| || | |||||||||||||| || ||| ||
Sbjct 183 GAAGAAATTGCCACCAAAGGAAGC-----C----GGTGACAAGAAGAAGAAGCGATCTAA 233
Query 237 GAAGAAGAGTATCGAGACTTACAAGATCTACATCTTCAAGGTGCTTAAGCAAGTTCATCC 296
||| || | |||| || |||||||||||||||||||||||||| ||||| ||||||||
Sbjct 234 GAA-AA-A-CGTCGAAACCTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTTCATCC 290
Query 297 CGATATCGGAATCTCAAGCAAAGCGATGGGGATTATGAACAGTTTCATCAACGATATCTT 356
||||||||||| ||||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 291 AGATATCGGAATTTCAAGCAAAGCCATGGGGATTATGAACAGTTTCATCAACGACATATT 350
Query 357 CGAGAAGCTTGCTCAAGAGGCGTCGAAGCTTGCGAGGTACAATAAGAAACCTACTATCAC 416
||||||||| ||||| || | ||||| || || |||||||| ||||| || || || ||
Sbjct 351 CGAGAAGCTAGCTCAGGAATCTTCGAAACTCGCTAGGTACAACAAGAAGCCGACCATTAC 410
Query 417 GTCCCGGGAGATTCAGACTGCTGTGAGATTGGTGCTTCCTGGAGAGTTGGCGAAGCATGC 476
|| || ||||| ||||| ||||||||| | || || || || || | || || || ||
Sbjct 411 ATCTCGCGAGATCCAGACGGCTGTGAGACTCGTCCTCCCCGGTGAACTCGCTAAACACGC 470
Query 477 TGTTTCTGAGGGGACTAAGGCGGTTACCAAATTCACCAGCTCTTGAATA-ATT-GAGTTA 534
|| ||||| || || |||||||||||||| || || |||||||||| | | | ||||
Sbjct 471 CGTCTCTGAAGGTACCAAGGCGGTTACCAAGTTTACTAGCTCTTGAAGAGACCCG-GTTA 529
Query 535 GGGttttt 542
||||||||
Sbjct 530 GGGTTTTT 537
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33807580931
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5