BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496130
Length=1046
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59950.5 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 1447 0.0
> AT5G59950.5 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:24139939-24141867 FORWARD LENGTH=1397
Length=1397
Score = 1447 bits (783), Expect = 0.0
Identities = 952/1030 (92%), Gaps = 25/1030 (2%)
Strand=Plus/Plus
Query 1 TTATTTCTCGCTCCTCCGCCGTCCAAAGAGAAACGTCGATCGGAGAAATC-TCGAGATGT 59
|||||||| |||| |||||||| ||||||||||||||||||||| || | | || ||||
Sbjct 242 TTATTTCTATCTCCCCCGCCGTCGAAAGAGAAACGTCGATCGGAG-AACCTTTGAAATGT 300
Query 60 CGAATGGATTAGATATGTCTCTCGACGACATGATCGCCAAGAACCGTAAGTCCCGTGGTG 119
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 301 CGACTGGATTAGATATGTCTCTCGACGACATGATCGCCAAGAACCGTAAGTCTCGTGGTG 360
Query 120 GAGCCGGCCCCG--C------CC-G-T--GGATCCGGACCGGGTCCAACTCGCCGCAACA 167
|||||||||||| | || | | ||||||||||||||||| |||||||||||||
Sbjct 361 GAGCCGGCCCCGCTCGTGGAACCGGATCCGGATCCGGACCGGGTCCGACTCGCCGCAACA 420
Query 168 ACCCTAATCGGAAATCAAACCGATCTGCTCCATACCAATCAGCCAAGGCGCCGGAGTCCA 227
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ACCCTAATCGGAAATCAACCCGATCTGCTCCATACCAATCAGCCAAGGCGCCGGAGTCCA 480
Query 228 CCTGGGGTCACGACATGTTCTCCGATAGATCTGAAGATTTCC-CTC--CCCGTTCTTCCG 284
|||||||||||||||||||||||||||||||||||||| || || ||||| ||||
Sbjct 481 CCTGGGGTCACGACATGTTCTCCGATAGATCTGAAGATCACCGATCGGGACGTTCCTCCG 540
Query 285 CCGGAATCGAAACTGGAACCAAGCTCTACATATCCAATTTGGATTACGGTGTCATGAACG 344
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 541 CCGGAATCGAAACTGGAACCAAGCTCTACATTTCCAATTTGGATTACGGTGTCATGAACG 600
Query 345 AAGACATCAAGGAACTGTTTGCTGAAGTTGGAGAACTTAAACGCTACACAGTTCATTTCG 404
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 601 AAGACATCAAGGAACTGTTTGCTGAAGTTGGAGAACTTAAACGCTACACAGTTCATTTTG 660
Query 405 ATAGGAGTGGAAGATCAAAGGGAACTGCTGAAGTAGTATACTCTCGGCGTGGTGATGCAC 464
|||| |||||||||||||||||||||||||||||||| || ||||||||||| |||||||
Sbjct 661 ATAGAAGTGGAAGATCAAAGGGAACTGCTGAAGTAGTGTATTCTCGGCGTGGCGATGCAC 720
Query 465 TCGCAGCTGTGAAGAAGTACAATGATGTTCAGCTTGATGGAAAACCCATGAAGATAGAGA 524
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 721 TCGCAGCTGTGAAGAAGTATAATGATGTTCAGCTGGATGGAAAACCCATGAAGATAGAGA 780
Query 525 TTGTGGGCACCAATCTTCAAACGGCTGCTGCCCCGTCTGGTAGACCTGCAAATGGAAACT 584
|||||||||| ||||||||||| ||||| |||||||||||||||||||| ||||||||||
Sbjct 781 TTGTGGGCACTAATCTTCAAACTGCTGCAGCCCCGTCTGGTAGACCTGCGAATGGAAACT 840
Query 585 CTAATGGTGCTCCATGGAG-AG-G-AGGACAAGGGAgaggtggtcaacaacgaggcggtg 641
| ||||||||||||||||| || | ||||||||||||||| |||||||||||||| ||||
Sbjct 841 CCAATGGTGCTCCATGGAGCAGAGGAGGACAAGGGAGAGGAGGTCAACAACGAGGTGGTG 900
Query 642 gtcgaggaggtggtgcccgtggtggtggtggtcgtggCAGGCGTCCTGGTAAGGGTCCTG 701
| |||||||| |||| ||| ||||||||||||||||| ||||||||||||||||| ||||
Sbjct 901 GACGAGGAGGCGGTGGCCGAGGTGGTGGTGGTCGTGGTAGGCGTCCTGGTAAGGGCCCTG 960
Query 702 CAGAGAAAATATCTGCTGAAGATCTTGATGCGGATCTTGATAAGTACCATTCTGGAGATA 761
||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 CAGAGAAGATTTCTGCGGAAGATCTTGATGCGGATCTTGATAAGTACCATTCTGGAGATA 1020
Query 762 TGGAGACAAACTAAGGAATGTGACCGATCTTCTCAAACCGCTAGAGGGTTTTAGGAGTAA 821
|||||||||||||||||| ||||| ||||||||||||||| ||| |||||||||||| ||
Sbjct 1021 TGGAGACAAACTAAGGAACGTGACTGATCTTCTCAAACCGGTAG-GGGTTTTAGGAGGAA 1079
Query 822 GAGGATCGAGAAAAATGTTTGCCAGAGGCTTTGCCACTTATCGCCTTTTTGGCTGTGTGT 881
||| |||||||||| ||||||||||||||||| ||||||| ||||||||||||||||| |
Sbjct 1080 GAGAATCGAGAAAA-TGTTTGCCAGAGGCTTTACCACTTAGCGCCTTTTTGGCTGTGT-T 1137
Query 882 TGTTCATTTGTTTCATTAGAATGACTCTACAGAATTGAGAATATGTGTTACTTTAAAGTT 941
||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1138 -GTTCATTTGTTTCATTAGAATGACTTTACAGAATTGAGAATATGTGTTA-TTTAAAGTT 1195
Query 942 GTTGTCTATCTTAATACCCTCGAGTAAAAGGCAGAGGAAGGAATACCAGTTTCGTCTACA 1001
||||||||||||||||||||| ||| |||||||||||||||||||||| |||||| ||||
Sbjct 1196 GTTGTCTATCTTAATACCCTCAAGTGAAAGGCAGAGGAAGGAATACCAATTTCGTTTACA 1255
Query 1002 GATCATATGC 1011
||||||||||
Sbjct 1256 GATCATATGC 1265
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51289064087
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5