BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496133
Length=1472
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59960.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2224 0.0
> AT5G59960.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to
17322 proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:24142014-24145333
REVERSE LENGTH=1611
Length=1611
Score = 2224 bits (1204), Expect = 0.0
Identities = 1333/1396 (95%), Gaps = 6/1396 (0%)
Strand=Plus/Plus
Query 60 GTAGTTTCTTTTTGGATCAGTGGGTTTTTGGAATGGAGAAAGTTTCATCGCCGTTTTCTT 119
|||||| |||||||||||||| |||||||| ||||||||||||||| ||||||| ||| |
Sbjct 163 GTAGTTCCTTTTTGGATCAGT-GGTTTTTGAAATGGAGAAAGTTTCGTCGCCGTCTTCCT 221
Query 120 CTTCTTCACGGAGGTCTGCTTATCTTGAAGCTCTTACACAGGAGATTAAGAAGAAGCTTA 179
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 222 CTTTTTCACGGAGGTCTGCTTATCTTGAAGCTCTTACACAAGAGATTAAGAAGAAGCTTA 281
Query 180 CTCGGGCTGTTGTCTCTCCAGCACAAACACGCAACTTGTTGCAAGACTTATTTGCTGATA 239
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 282 CACGGGCTGTTGTCTCTCCAGCACAAACACGCAACTTGTTACAAGACTTATTTGCTGATA 341
Query 240 TAGCTCTCGAAGTCGACGAAAGAGCGAAAGATGTGATCCTTAGCAAAGAAGAGGATGTGA 299
||||||||||||| ||||| |||| |||||||||||||||||||||||||||||| |||
Sbjct 342 TAGCTCTCGAAGTAGACGATCGAGCCAAAGATGTGATCCTTAGCAAAGAAGAGGATTTGA 401
Query 300 TTTCTTCTGTTGAAGCAGATGCCGATGGTCCATTATGCTTTTTCGATGTCCTTGCTGATT 359
|| |||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 402 TTACTTCTGATGAAGCAGATGCTGATGGTCCGTTATGCTTTTTCGATGTCCTTGCTGATT 461
Query 360 ATTATGTGAAAGTGTCTGAGAGGGGAAAGGATATACTTGATTTGATGGTCCAGCTCTGGA 419
| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||
Sbjct 462 ACTATGTGAAAGTGTCTGAGAGGGGGAAGGATATACTTGATTTGATGGTGCAGCTGTGGA 521
Query 420 GCCAGTCCTTTGCATCACATATATTCTCTCTACTGTTTCATAAATGGCTGTTTGAGGTTG 479
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 522 GCCAGTCCTTTGCATCACATATATTCTCTCTACTGTTCCATAAATGGCTGTTTGAGGTTG 581
Query 480 AGCTTGAGAATCAAGAAATACTCCTGCGCTATTCTTCAGCTCTGGTGCAGGGAGCAACAA 539
||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 582 AGCTTGACAATCAAGAAATACTCCTGCGATATTCTTCGGCTCTGGTGCAGGGAGCAACAA 641
Query 540 ATGTGTTCTGGATAGACATCCAGACAAATACGAGGCGCTTCCAAAGTCTCTTTCGGTATC 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 642 ATGTGTTCTGGATAGACATCCAGACAAATACGAGGCGCTTCCAAAGTCTCTTTCGGTATC 701
Query 600 TTCTTGAGGAAGTTGCTTTGGAGCAGATGCGATTGaaaaaaaTTCCCATTCAGGCACAGA 659
| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 702 TCCTTGAGGAAGTTGCTTTGGAGCAGATACGATTGAAAAAAATTCCCATTCAGGCTCAGA 761
Query 660 GGGAACTGTATCTCTTACTCTCTAGGTTCATTTTCTTTTACAATTCAGTGGATAAACTCG 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 762 GGGAACTGTATCTCTTACTCTCTAGGTTCATTTTCTTTTACAATTCAGTGGATAAACTCG 821
Query 720 ATAGCTTCTTGAGGAACTTCCCAGAGTTTCCAAATGCTTTCTTGATTGGAGGACCCGGAG 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 822 ATAGCTTCTTGAGGAACTTCCCAGAGTTTCCAAATGCTTTCTTGATTGGAGGACCTGGAG 881
Query 780 ATTTCCTTGTTATTGAACTAACGGATCAGCTGCAAAAACTGAAGGTGGAACCAGTACTGC 839
||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 882 ATTTCCTTGTTATCGAACTAACTGATCAGCTGCAAAAACTGAAGGTGGAACCAGTGCTGC 941
Query 840 TACATTATCTTTCTCAGATGAAGATTCTTCAAGGTATGGAACTGAGAATGACCACTAGCA 899
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 942 TACATTATCTTTCTCAGATGAAGATTCTTCAAGGTATGGAACTGAGAATGACTACTAGCA 1001
Query 900 CAAGGTTAAAGGCGTGTTTATACAGTTTTACCTCTCCTGGAGGTCCAATGTACCCGACAA 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1002 CAAGGTTAAAGGCGTGTTTATACAGTTTTACCTCTCCTGGAGGTCCAATGTACCCGACAA 1061
Query 960 GAGCCGTCCGTCATGCAGCCTGGGATGCTTTGGATTCCCTCTTTCCTGTGGGGCGTTACC 1019
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1062 GAGCCGTCCGTCATGCAGCCTGGGATGCTTTGGATTCCCTCTTTCCTGTTGGGCGTTACC 1121
Query 1020 CAAGGCATCTCATTAGTCTATTTTTCAGGCTGCTATATCCGTGGTACTGGCCATCCTCAT 1079
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1122 CGAGGCATCTCATTAGTCTATTTTTCAGGCTGCTATATCCGTGGTACTGGCCATCCTCAT 1181
Query 1080 GCTGGAACTTTGTGGTTTCTTGCATCAAAGCGGTACTATATTCTATCGTAAGGCTCATCT 1139
||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||
Sbjct 1182 GCTGGAACTTTGTGGTTTCTTGCATTAAGGCGGTACTCTATTCTATCGTAAGGCTCATCT 1241
Query 1140 TTTCACGGAGAGAAAAGCCAAGGCAGCGCTGAATAGCTTTTAGTTTTGACGAAGCTTACA 1199
|||||||| ||||||||||||||||| ||||||||||||||| |||||| ||||||||||
Sbjct 1242 TTTCACGGCGAGAAAAGCCAAGGCAGAGCTGAATAGCTTTTACTTTTGATGAAGCTTACA 1301
Query 1200 GCAGGAATCCAATCCTTGTGTATATAATGTGCTTTTGGTCACAGAGGCAAACCAGAGAAC 1259
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||
Sbjct 1302 GCAGGAATCCAATCCTTGTGTATATAATGTGGTTTTGGTCAAAGAGGCAAACCAGTGAAC 1361
Query 1260 CTTACCTTCACCTGTATTACTATCTACAGAGAAGATAAACTCCGTTTTGTGAAAGAACCC 1319
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 1362 CTTACCTTCACCTGTATTACTGTCTACAGAGAAGATAAACTCCGTTTTGTGAAAGATCCC 1421
Query 1320 ATGGAAAAGCTTTTGACTTGTTTTGTTGTCATTGGTGAAATTGTTATTTTGCTATAGAGG 1379
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1422 ATGGATAAGCTTTTGACTTGTTTTGTTGTCATTGGTAAAATTGTTATTTTGCTATAGAGG 1481
Query 1380 ATGATGCATTGTGACCAGAAGCCCTTCTTGTGTAGGAGATAAACCATTTCGTCC----GT 1435
| | || |||||| |||||| |||||||||||||| ||||||||||||||| || ||
Sbjct 1482 ACG-TGTATTGTGTCCAGAAACCCTTCTTGTGTAGAAGATAAACCATTTCGGCCTTCTGT 1540
Query 1436 TTTAGTTGTACTGGAT 1451
|||||||||| |||||
Sbjct 1541 TTTAGTTGTATTGGAT 1556
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72589988070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5