BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg496133 Length=1472 Score E Sequences producing significant alignments: (Bits) Value AT5G59960.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2224 0.0 > AT5G59960.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:24142014-24145333 REVERSE LENGTH=1611 Length=1611 Score = 2224 bits (1204), Expect = 0.0 Identities = 1333/1396 (95%), Gaps = 6/1396 (0%) Strand=Plus/Plus Query 60 GTAGTTTCTTTTTGGATCAGTGGGTTTTTGGAATGGAGAAAGTTTCATCGCCGTTTTCTT 119 |||||| |||||||||||||| |||||||| ||||||||||||||| ||||||| ||| | Sbjct 163 GTAGTTCCTTTTTGGATCAGT-GGTTTTTGAAATGGAGAAAGTTTCGTCGCCGTCTTCCT 221 Query 120 CTTCTTCACGGAGGTCTGCTTATCTTGAAGCTCTTACACAGGAGATTAAGAAGAAGCTTA 179 ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 222 CTTTTTCACGGAGGTCTGCTTATCTTGAAGCTCTTACACAAGAGATTAAGAAGAAGCTTA 281 Query 180 CTCGGGCTGTTGTCTCTCCAGCACAAACACGCAACTTGTTGCAAGACTTATTTGCTGATA 239 | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 282 CACGGGCTGTTGTCTCTCCAGCACAAACACGCAACTTGTTACAAGACTTATTTGCTGATA 341 Query 240 TAGCTCTCGAAGTCGACGAAAGAGCGAAAGATGTGATCCTTAGCAAAGAAGAGGATGTGA 299 ||||||||||||| ||||| |||| |||||||||||||||||||||||||||||| ||| Sbjct 342 TAGCTCTCGAAGTAGACGATCGAGCCAAAGATGTGATCCTTAGCAAAGAAGAGGATTTGA 401 Query 300 TTTCTTCTGTTGAAGCAGATGCCGATGGTCCATTATGCTTTTTCGATGTCCTTGCTGATT 359 || |||||| |||||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 402 TTACTTCTGATGAAGCAGATGCTGATGGTCCGTTATGCTTTTTCGATGTCCTTGCTGATT 461 Query 360 ATTATGTGAAAGTGTCTGAGAGGGGAAAGGATATACTTGATTTGATGGTCCAGCTCTGGA 419 | ||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||| Sbjct 462 ACTATGTGAAAGTGTCTGAGAGGGGGAAGGATATACTTGATTTGATGGTGCAGCTGTGGA 521 Query 420 GCCAGTCCTTTGCATCACATATATTCTCTCTACTGTTTCATAAATGGCTGTTTGAGGTTG 479 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 522 GCCAGTCCTTTGCATCACATATATTCTCTCTACTGTTCCATAAATGGCTGTTTGAGGTTG 581 Query 480 AGCTTGAGAATCAAGAAATACTCCTGCGCTATTCTTCAGCTCTGGTGCAGGGAGCAACAA 539 ||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 582 AGCTTGACAATCAAGAAATACTCCTGCGATATTCTTCGGCTCTGGTGCAGGGAGCAACAA 641 Query 540 ATGTGTTCTGGATAGACATCCAGACAAATACGAGGCGCTTCCAAAGTCTCTTTCGGTATC 599 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 642 ATGTGTTCTGGATAGACATCCAGACAAATACGAGGCGCTTCCAAAGTCTCTTTCGGTATC 701 Query 600 TTCTTGAGGAAGTTGCTTTGGAGCAGATGCGATTGaaaaaaaTTCCCATTCAGGCACAGA 659 | |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 702 TCCTTGAGGAAGTTGCTTTGGAGCAGATACGATTGAAAAAAATTCCCATTCAGGCTCAGA 761 Query 660 GGGAACTGTATCTCTTACTCTCTAGGTTCATTTTCTTTTACAATTCAGTGGATAAACTCG 719 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 762 GGGAACTGTATCTCTTACTCTCTAGGTTCATTTTCTTTTACAATTCAGTGGATAAACTCG 821 Query 720 ATAGCTTCTTGAGGAACTTCCCAGAGTTTCCAAATGCTTTCTTGATTGGAGGACCCGGAG 779 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 822 ATAGCTTCTTGAGGAACTTCCCAGAGTTTCCAAATGCTTTCTTGATTGGAGGACCTGGAG 881 Query 780 ATTTCCTTGTTATTGAACTAACGGATCAGCTGCAAAAACTGAAGGTGGAACCAGTACTGC 839 ||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 882 ATTTCCTTGTTATCGAACTAACTGATCAGCTGCAAAAACTGAAGGTGGAACCAGTGCTGC 941 Query 840 TACATTATCTTTCTCAGATGAAGATTCTTCAAGGTATGGAACTGAGAATGACCACTAGCA 899 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 942 TACATTATCTTTCTCAGATGAAGATTCTTCAAGGTATGGAACTGAGAATGACTACTAGCA 1001 Query 900 CAAGGTTAAAGGCGTGTTTATACAGTTTTACCTCTCCTGGAGGTCCAATGTACCCGACAA 959 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1002 CAAGGTTAAAGGCGTGTTTATACAGTTTTACCTCTCCTGGAGGTCCAATGTACCCGACAA 1061 Query 960 GAGCCGTCCGTCATGCAGCCTGGGATGCTTTGGATTCCCTCTTTCCTGTGGGGCGTTACC 1019 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1062 GAGCCGTCCGTCATGCAGCCTGGGATGCTTTGGATTCCCTCTTTCCTGTTGGGCGTTACC 1121 Query 1020 CAAGGCATCTCATTAGTCTATTTTTCAGGCTGCTATATCCGTGGTACTGGCCATCCTCAT 1079 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1122 CGAGGCATCTCATTAGTCTATTTTTCAGGCTGCTATATCCGTGGTACTGGCCATCCTCAT 1181 Query 1080 GCTGGAACTTTGTGGTTTCTTGCATCAAAGCGGTACTATATTCTATCGTAAGGCTCATCT 1139 ||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||| Sbjct 1182 GCTGGAACTTTGTGGTTTCTTGCATTAAGGCGGTACTCTATTCTATCGTAAGGCTCATCT 1241 Query 1140 TTTCACGGAGAGAAAAGCCAAGGCAGCGCTGAATAGCTTTTAGTTTTGACGAAGCTTACA 1199 |||||||| ||||||||||||||||| ||||||||||||||| |||||| |||||||||| Sbjct 1242 TTTCACGGCGAGAAAAGCCAAGGCAGAGCTGAATAGCTTTTACTTTTGATGAAGCTTACA 1301 Query 1200 GCAGGAATCCAATCCTTGTGTATATAATGTGCTTTTGGTCACAGAGGCAAACCAGAGAAC 1259 ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||| Sbjct 1302 GCAGGAATCCAATCCTTGTGTATATAATGTGGTTTTGGTCAAAGAGGCAAACCAGTGAAC 1361 Query 1260 CTTACCTTCACCTGTATTACTATCTACAGAGAAGATAAACTCCGTTTTGTGAAAGAACCC 1319 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| Sbjct 1362 CTTACCTTCACCTGTATTACTGTCTACAGAGAAGATAAACTCCGTTTTGTGAAAGATCCC 1421 Query 1320 ATGGAAAAGCTTTTGACTTGTTTTGTTGTCATTGGTGAAATTGTTATTTTGCTATAGAGG 1379 ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1422 ATGGATAAGCTTTTGACTTGTTTTGTTGTCATTGGTAAAATTGTTATTTTGCTATAGAGG 1481 Query 1380 ATGATGCATTGTGACCAGAAGCCCTTCTTGTGTAGGAGATAAACCATTTCGTCC----GT 1435 | | || |||||| |||||| |||||||||||||| ||||||||||||||| || || Sbjct 1482 ACG-TGTATTGTGTCCAGAAACCCTTCTTGTGTAGAAGATAAACCATTTCGGCCTTCTGT 1540 Query 1436 TTTAGTTGTACTGGAT 1451 |||||||||| ||||| Sbjct 1541 TTTAGTTGTATTGGAT 1556 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72589988070 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5