BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496134
Length=491
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59970.1 | Symbols: | Histone superfamily protein | chr5:24... 619 6e-177
AT5G59690.1 | Symbols: | Histone superfamily protein | chr5:24... 518 2e-146
AT3G45930.1 | Symbols: | Histone superfamily protein | chr3:16... 390 5e-108
AT3G46320.1 | Symbols: | Histone superfamily protein | chr3:17... 381 3e-105
AT3G53730.1 | Symbols: | Histone superfamily protein | chr3:19... 281 3e-75
> AT5G59970.1 | Symbols: | Histone superfamily protein | chr5:24146175-24146726
REVERSE LENGTH=552
Length=552
Score = 619 bits (335), Expect = 6e-177
Identities = 454/508 (89%), Gaps = 22/508 (4%)
Strand=Plus/Plus
Query 1 aaaaaa-aaa-CTAAATT-TCTCGAGAAAATGTCGGGTCGTGGAAAGGGAGGAAAAGGTT 57
|||||| ||| || |||| ||||||||||||||| ||||||||||||||||||||||| |
Sbjct 36 AAAAAAGAAATCT-AATTCTCTCGAGAAAATGTCTGGTCGTGGAAAGGGAGGAAAAGGCT 94
Query 58 TGGGCAAAGGAGGAGCGAAGCGTCACAGGAAGGTTCTGAGAGACAACATCCAAGGAATCA 117
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 95 TGGGTAAAGGAGGAGCCAAGCGTCACAGGAAGGTTCTGAGAGACAACATCCAAGGAATCA 154
Query 118 CCAAGCCGGCGATTCGGAGACTGGCTCGTAGAGGTGGAGTCAAGCGTATCAGTGGTCTGA 177
||||||| || ||||| ||| |||||||||||||||||||||||||||| |||||||| |
Sbjct 155 CCAAGCCTGCCATTCGAAGATTGGCTCGTAGAGGTGGAGTCAAGCGTATTAGTGGTCTCA 214
Query 178 TCTACGAGGAGACTCGTGGCGTCCTGAAGATCTTTCTCGAGAACGTGATTCGTGACGCTG 237
||||||||||||| ||||||||||| |||||||||||||||||||| |||||||| ||||
Sbjct 215 TCTACGAGGAGACACGTGGCGTCCTCAAGATCTTTCTCGAGAACGTAATTCGTGATGCTG 274
Query 238 TTACTTACACCGAGCACGCCAGGAGGAAGACTGTGACCGCCATGGATGTTGTTTACGCTC 297
| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 275 TCACTTACACCGAGCACGCTAGGAGGAAGACTGTGACCGCCATGGATGTTGTCTACGCTC 334
Query 298 TCAAGAGGCAAGGAAGGACTCTTTACGGATTCGGCGGTTGAA-CGGGGGttttttt--tt 354
|||||||||||||||||||||| |||||||||||||||| || | ||| ||||| ||
Sbjct 335 TCAAGAGGCAAGGAAGGACTCTCTACGGATTCGGCGGTT-AATCAGGG-TTTTTCAGATT 392
Query 355 GTGTGTTTGTAGATCTGTTTCTGAAAATTAGGTTTCATGAACT-CATTGTGGGTATTTTA 413
|||||||| ||||||||||||| ||||||| ||| | ||| | || ||| |||||||||
Sbjct 393 -TGTGTTTGGAGATCTGTTTCTGGAAATTAGATTTGA-GAATTTCAATGTAGGTATTTTA 450
Query 414 GTAAATGTAG-----TTT-----CCtttttttGCTATTTGGCTTTTGTAGTGTGTTTTCA 463
|||||||||| ||| |||||||||||||||| ||||||||| ||||||||||
Sbjct 451 GTAAATGTAGCAAGATTTGATTTCCTTTTTTTGCTATTTCGCTTTTGTAATGTGTTTTCA 510
Query 464 TTTGCAAAATTCTCAACAATGGAATCAC 491
||||| |||||||||||||||||| |||
Sbjct 511 TTTGCTAAATTCTCAACAATGGAAACAC 538
> AT5G59690.1 | Symbols: | Histone superfamily protein | chr5:24051552-24052143
FORWARD LENGTH=592
Length=592
Score = 518 bits (280), Expect = 2e-146
Identities = 315/332 (95%), Gaps = 2/332 (1%)
Strand=Plus/Plus
Query 7 aaaCTAAAT-TTCTC-GAGAAAATGTCGGGTCGTGGAAAGGGAGGAAAAGGTTTGGGCAA 64
||||||||| ||| | || |||||||||||||||||||||||||||||||||||||| ||
Sbjct 76 AAACTAAATCTTCGCTGAAAAAATGTCGGGTCGTGGAAAGGGAGGAAAAGGTTTGGGTAA 135
Query 65 AGGAGGAGCGAAGCGTCACAGGAAGGTTCTGAGAGACAACATCCAAGGAATCACCAAGCC 124
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 136 GGGAGGAGCCAAGCGTCACAGGAAGGTTCTGAGAGACAACATCCAAGGAATCACCAAGCC 195
Query 125 GGCGATTCGGAGACTGGCTCGTAGAGGTGGAGTCAAGCGTATCAGTGGTCTGATCTACGA 184
|||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 196 TGCGATTCGAAGATTGGCTCGTAGAGGTGGAGTCAAGCGTATCAGTGGTCTCATCTACGA 255
Query 185 GGAGACTCGTGGCGTCCTGAAGATCTTTCTCGAGAACGTGATTCGTGACGCTGTTACTTA 244
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct 256 GGAGACTCGTGGCGTCCTCAAGATCTTTCTCGAGAACGTGATTCGTGATGCTGTCACTTA 315
Query 245 CACCGAGCACGCCAGGAGGAAGACTGTGACCGCCATGGATGTTGTTTACGCTCTCAAGAG 304
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 316 CACCGAGCACGCTAGGAGGAAGACTGTGACCGCCATGGATGTTGTCTACGCTCTCAAGAG 375
Query 305 GCAAGGAAGGACTCTTTACGGATTCGGCGGTT 336
||||||||||||||||||||||||||| ||||
Sbjct 376 GCAAGGAAGGACTCTTTACGGATTCGGTGGTT 407
> AT3G45930.1 | Symbols: | Histone superfamily protein | chr3:16883316-16883876
FORWARD LENGTH=561
Length=561
Score = 390 bits (211), Expect = 5e-108
Identities = 280/314 (89%), Gaps = 2/314 (1%)
Strand=Plus/Plus
Query 22 AGAAAATGTCGGGTCGTGGAAAGGGAGGAAAAGGTTTGGGCAAAGGAGGAGCGAAGCGTC 81
|||||||||| ||||||||||||||||| ||||||||||||||||| ||||| || ||||
Sbjct 70 AGAAAATGTCAGGTCGTGGAAAGGGAGGCAAAGGTTTGGGCAAAGGTGGAGCCAAACGTC 129
Query 82 ACAGGAAGGTTCTGAGAGACAACATCCAAGGAATCACCAAGCCGGCGATTCGGAGACTGG 141
| ||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||
Sbjct 130 ATAGGAAGGTTCTGAGAGACAACATCCAAGGAATCACTAAACCGGCGATTCGGAGATTGG 189
Query 142 CTCGTAGAGGTGGAGTCAAGCGTATCAGTGGTCTGATCTACGAGGAGACTCGTGGCGTCC 201
||||||||||||| || || ||||| ||||||||||||||||| ||||| |||||||| |
Sbjct 190 CTCGTAGAGGTGGTGTTAAACGTATTAGTGGTCTGATCTACGAAGAGACACGTGGCGTTC 249
Query 202 TGAAGATCTTTCTCGAGAACGTGATTCGTGACGCTGTTACTTACACCGAGCACGC-CAGG 260
| ||||||||| | ||||| || || |||||||| ||||||||||| |||||||| | ||
Sbjct 250 TCAAGATCTTTTTGGAGAATGTTATCCGTGACGCCGTTACTTACACTGAGCACGCTC-GG 308
Query 261 AGGAAGACTGTGACCGCCATGGATGTTGTTTACGCTCTCAAGAGGCAAGGAAGGACTCTT 320
|||||||| ||||| || |||||||||||||| ||||| ||||| |||||||| |||||
Sbjct 309 AGGAAGACGGTGACTGCTATGGATGTTGTTTATGCTCTTAAGAGACAAGGAAGAACTCTC 368
Query 321 TACGGATTCGGCGG 334
||||||||||||||
Sbjct 369 TACGGATTCGGCGG 382
> AT3G46320.1 | Symbols: | Histone superfamily protein | chr3:17019911-17020428
REVERSE LENGTH=518
Length=518
Score = 381 bits (206), Expect = 3e-105
Identities = 281/318 (88%), Gaps = 2/318 (1%)
Strand=Plus/Plus
Query 22 AGAAAATGTCGGGTCGTGGAAAGGGAGGAAAAGGTTTGGGCAAAGGAGGAGCGAAGCGTC 81
|||||||||| ||||||||||||||||| ||||||||||||||||| ||||| || ||||
Sbjct 70 AGAAAATGTCAGGTCGTGGAAAGGGAGGCAAAGGTTTGGGCAAAGGTGGAGCCAAACGTC 129
Query 82 ACAGGAAGGTTCTGAGAGACAACATCCAAGGAATCACCAAGCCGGCGATTCGGAGACTGG 141
| ||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||
Sbjct 130 ATAGGAAGGTTCTGAGAGACAACATCCAAGGAATCACTAAACCGGCGATTCGGAGATTGG 189
Query 142 CTCGTAGAGGTGGAGTCAAGCGTATCAGTGGTCTGATCTACGAGGAGACTCGTGGCGTCC 201
||||||||||||| || || ||||| |||||| |||||||||||||||| |||||||| |
Sbjct 190 CTCGTAGAGGTGGTGTTAAACGTATTAGTGGTTTGATCTACGAGGAGACACGTGGCGTTC 249
Query 202 TGAAGATCTTTCTCGAGAACGTGATTCGTGACGCTGTTACTTACACCGAGCACGC-CAGG 260
| ||||||||| | || || || || |||||||| ||||||||||| |||||||| | ||
Sbjct 250 TCAAGATCTTTTTGGAAAATGTTATCCGTGACGCCGTTACTTACACTGAGCACGCTC-GG 308
Query 261 AGGAAGACTGTGACCGCCATGGATGTTGTTTACGCTCTCAAGAGGCAAGGAAGGACTCTT 320
|||||||| ||||| || |||||||||||||| ||||| ||||| |||||||| |||||
Sbjct 309 AGGAAGACGGTGACTGCTATGGATGTTGTTTATGCTCTTAAGAGACAAGGAAGAACTCTC 368
Query 321 TACGGATTCGGCGGTTGA 338
|| |||||||| ||||||
Sbjct 369 TATGGATTCGGTGGTTGA 386
> AT3G53730.1 | Symbols: | Histone superfamily protein | chr3:19912494-19913033
REVERSE LENGTH=540
Length=540
Score = 281 bits (152), Expect = 3e-75
Identities = 265/319 (83%), Gaps = 9/319 (3%)
Strand=Plus/Plus
Query 21 GAG-AAAATGTCGGGTCGTGGAAAGGGAGGAAAAGGTTTGGGCAAA-GGAGGAGCGAAGC 78
||| |||||||| || || ||||||||||||||||| || || ||| |||||||| |||
Sbjct 57 GAGAAAAATGTCAGGCCGAGGAAAGGGAGGAAAAGGATTAGG-AAAGGGAGGAGCCAAGA 115
Query 79 GTCA-CAGGAAGGTTCTGAGAGACAACATCCAAGGAATCACCAAGCCGGCGATTCGGAGA 137
| || | |||| || || ||||||||||||||||| || ||||| || |||||||| |
Sbjct 116 GACATC-GGAAAGTACTCAGAGACAACATCCAAGGGATTACCAAACCTGCGATTCGTCGT 174
Query 138 CTGGCTCGTAGAGGTGGAGTCAAGCGTATCAGTGGTCTGATCTACGAGGAGACTCGTGGC 197
|| || | ||||| || || ||||||||||||||| ||||||| || |||||||| |||
Sbjct 175 CTCGCGAGAAGAGGAGGCGTGAAGCGTATCAGTGGTTTGATCTATGAAGAGACTCGCGGC 234
Query 198 GTCCTGAAGATCTTTCTCGAGAACGTGATTCGTGACGCTGTTACTTACACCGAGCACGC- 256
|| || |||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 235 GTTCTCAAGATCTTTCTCGAGAACGTGATTCGTGACGCCGTTACTTACACGGAGCACGCT 294
Query 257 CAGGAGGAAGACTGTGACCGCCATGGATGTTGTTTACGCTCTCAAGAGGCAAGGAAGGAC 316
| | |||| ||||| || || ||||| || ||||||||||||||||| |||||| | ||
Sbjct 295 C-GCCGGAAAACTGTTACGGCGATGGACGTCGTTTACGCTCTCAAGAGACAAGGACGAAC 353
Query 317 TCTT-TACGGATTCGGCGG 334
| || || |||||||||||
Sbjct 354 T-TTGTATGGATTCGGCGG 371
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23409112502
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5