BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496140
Length=2009
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60020.1 | Symbols: LAC17, ATLAC17 | laccase 17 | chr5:24167... 3334 0.0
AT5G60022.1 | Symbols: | other RNA | chr5:24167141-24170261 RE... 547 1e-154
> AT5G60020.1 | Symbols: LAC17, ATLAC17 | laccase 17 | chr5:24167996-24170462
FORWARD LENGTH=2049
Length=2049
Score = 3334 bits (1805), Expect = 0.0
Identities = 1942/2010 (97%), Gaps = 2/2010 (0%)
Strand=Plus/Plus
Query 1 ACCTGCTCTAAACAACGCCTCGGTGTCCAACCTCACTTAAATGGCGTTTCAGCTTCTCTT 60
||||||||||||||||||||| |||||||| ||||||| ||||||||| ||||| ||| |
Sbjct 37 ACCTGCTCTAAACAACGCCTCCGTGTCCAAGCTCACTTCAATGGCGTTACAGCTACTCCT 96
Query 61 AGCTGTATTCTCTTGTGTTCTTCTTCTACCTCAACCTGCATTTGGGATTACAAGGCATTA 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 97 AGCTGTATTCTCTTGTGTTCTTCTTCTTCCTCAACCTGCATTTGGGATTACAAGGCATTA 156
Query 121 TACGCTGGAAATCAAAATGCAGAACGTGACACGTCTTTGCCACACAAAGAGCCTTGTTTC 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 157 TACGCTGGAAATCAAAATGCAGAACGTAACACGTCTTTGCCACACAAAGAGCCTTGTTTC 216
Query 181 TGTAAATGGGCAGTTTCCAGGTCCTAAGCTTATTGCTAGGGAAGGTGACCAGCTTCTGAT 240
|||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 217 TGTAAACGGGCAGTTTCCAGGTCCTAAGCTTATTGCTAGAGAAGGTGACCAGGTTCTGAT 276
Query 241 CAAAGTCGTTAATCAAGTGTCAAACAACATTTCTATCCACTGGCATGGGATCCGGCAATT 300
||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||
Sbjct 277 CAAAGTCGTTAATCAAGTGCCAAACAACATCTCTCTCCACTGGCATGGGATCCGGCAATT 336
Query 301 ACGGAGTGGATGGGCTGATGGACCAGCCTATATAACCCAATGTCCTATTCAGACAGGACA 360
||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 337 ACGAAGTGGTTGGGCTGATGGTCCAGCCTATATAACCCAATGTCCTATTCAGACAGGACA 396
Query 361 AAGCTATGTTTACAACTATACCATTGTTGGTCAAAGAGGCACTCTGTGGTACCATGCTCA 420
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 397 AAGCTATGTTTACAACTATACCATTGTTGGTCAACGAGGCACTCTGTGGTACCATGCTCA 456
Query 421 CATTTCATGGCTAAGATCAACAGTCTATGGTCCACTTATCATCCTTCCCAAACGCGGTGT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 457 CATTTCATGGCTAAGATCAACAGTCTATGGTCCACTTATCATCCTTCCCAAACGCGGAGT 516
Query 481 TCCTTACCCGTTTGCTAAACCTCACAAAGAAGTTCCCATGATCTTTGGGGAGTGGTTCAA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 517 TCCTTACCCGTTTGCTAAACCTCACAAAGAAGTTCCCATGATCTTTGGGGAGTGGTTCAA 576
Query 541 CGCAGACCCTGAGGCAATCATTCGCCAAGCAACCCAAACAGGAGGCGGTCCTAATGTATC 600
||||||| ||||||||||||| ||||||||||||||||||||||| ||||| ||||| ||
Sbjct 577 CGCAGACACTGAGGCAATCATCCGCCAAGCAACCCAAACAGGAGGTGGTCCCAATGTCTC 636
Query 601 TGATGCTTACACGATCAACGGGCTTCCTGGTCCATTATACAACTGCTCGGCGAAAGATAC 660
||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||
Sbjct 637 TGATGCTTACACGATAAACGGGCTTCCTGGTCCATTATACAACTGCTCCGCAAAAGATAC 696
Query 661 ATTCAGACTGAGAGTGAAGCCAGGAAAAACATACCTTCTCAGGCTAATCAATGCTGCACT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 697 ATTCAGACTGAGAGTGAAGCCAGGAAAAACATACCTTCTCAGGCTAATCAATGCTGCACT 756
Query 721 TAATGACGAGCTCTTTTTCAGCATCGCAAATCACACGATTACGGTTGTTGAAGCTGATGC 780
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 757 TAATGACGAGCTCTTTTTCAGCATCGCAAATCACACGGTTACGGTTGTTGAAGCTGATGC 816
Query 781 GATCTATGTTAAGCCATTTGAGACGGATACCATCTTAATTGCTCCCGGCCAGACCACAAA 840
|||||||||||||||||||||||| || ||||||||||||||||| || |||||||||||
Sbjct 817 GATCTATGTTAAGCCATTTGAGACTGAAACCATCTTAATTGCTCCTGGTCAGACCACAAA 876
Query 841 CGTCCTGCTGAAGACTAAATCTAGTTACCCGAGTGCCTCCTTCTTCATGACTGCTAGACC 900
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 877 CGTCCTGCTGAAGACTAAATCTAGTTATCCGAGTGCCTCCTTCTTCATGACTGCTAGACC 936
Query 901 ATACGTCACAGGTCAAGGAACTTTTGATAACTCTACAGTTGCTGGAATCTTAGAATATGA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 937 ATACGTCACAGGTCAAGGAACTTTTGATAACTCTACAGTTGCTGGAATCTTAGAATATGA 996
Query 961 ACCACCTAAACAGACCAAAGATGCTCACTCAAGGACCTCTATCAAAAATCTCCAACTCTT 1020
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 997 ACCACCTAAACAGACCAAAGGTGCTCACTCAAGGACCTCTATCAAAAATCTTCAACTCTT 1056
Query 1021 CAAACCGATACTCCCTGCTCTAAACGATACAAATTTTGCTACCAAGTTTAGCAATAAGCT 1080
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1057 CAAACCGATACTCCCTGCTCTAAACGATACAAATTTTGCTACCAAGTTCAGTAATAAGCT 1116
Query 1081 ACGCAGCCTGAACAGCAAAAATTTTCCAGCAAACGTGCCTCTGAATATTGATCGAAAGTT 1140
||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||
Sbjct 1117 ACGCAGCCTGAACAGCAAAAACTTTCCAGCAAACGTGCCTCTGAATGTTGATCGGAAGTT 1176
Query 1141 CTTCTTCACAGTAGGATTGGGAACAAACCCGTGCAATCATAAGAATAACCAGACATGCCA 1200
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1177 CTTCTTCACAGTAGGACTGGGAACAAACCCGTGCAATCATAAGAATAACCAGACATGCCA 1236
Query 1201 GGGTCCTACTAACACCACAATGTTTGCTGCCTCAATCAGTAACATTTCCTTCATAATGCC 1260
||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||
Sbjct 1237 AGGTCCTACTAACACCACAATGTTTGCTGCTTCAATCAGTAACATTTCATTCACAATGCC 1296
Query 1261 AACAAAAGCTCTCCTTCAATCTCACTATTCTGGGCAATCTCATGGAGTTTATTCCCCAAA 1320
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1297 AACAAAAGCTCTCCTTCAATCTCACTATTCTGGGCAATCTCATGGAGTGTATTCCCCAAA 1356
Query 1321 ATTTCCATGGAGTCCCATTGTCCCATTTAACTACACAGGCACTCCACCTAACAATACCAT 1380
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1357 ATTCCCATGGAGTCCCATTGTCCCTTTTAACTACACAGGCACTCCACCTAACAATACTAT 1416
Query 1381 GATTAGCAACGGTACAAACTTGATGGTTCTACCTTATAACACCAGTGTGGAGCTGGTGAT 1440
| |||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1417 GGTTAGTAACGGGACAAACTTGATGGTTCTACCTTATAACACCAGTGTGGAGTTGGTGAT 1476
Query 1441 GCAAGACACTAGCATTCTTGGTGCAGAAAGCCATCCTCTTCATCTTCATGGGTTCAACTT 1500
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1477 GCAAGACACTAGCATTCTTGGCGCAGAAAGCCATCCTCTTCATCTTCATGGGTTCAACTT 1536
Query 1501 CTTTGTGGTTGGCCAAGGCTTTGGGAATTTCGACCCGAACAAGGATCCTAAAAACTTCAA 1560
|||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 1537 CTTTGTTGTTGGCCAAGGGTTTGGGAATTTCGACCCGAACAAGGATCCTAGAAACTTCAA 1596
Query 1561 CCTTGTTGACCCAATAGAGAGGAACACAATCGGTGTGCCATCTGGTGGATGGGCTGCTAT 1620
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1597 CCTTGTTGACCCAATAGAGAGGAACACAGTCGGTGTGCCATCTGGTGGATGGGCTGCTAT 1656
Query 1621 TCGATTCCTTGCAGATAACCCAGGAGTGTGGTTCATGCACTGTCACTTGGAAGTACATAC 1680
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1657 TCGATTCCTTGCAGATAACCCAGGAGTGTGGTTCATGCACTGTCACTTGGAAGTGCATAC 1716
Query 1681 CAGTTGGGGTCTGAGGATGGCTTGGCTTGTTCTTGATGGAGATAAACCTGATCAGAAACT 1740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1717 CAGTTGGGGTCTGAGGATGGCTTGGCTTGTTCTTGATGGAGATAAACCTGATCAGAAACT 1776
Query 1741 TCTTCCTCCTCCTGCAGACTTGCCCAAATGCTGAGAATTCTTTCCCCATGATTCAAGTCc 1800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 TCTTCCTCCTCCTGCAGACTTGCCCAAATGCTGAGAATTCTTTCCCCATGATTCAAGTCC 1836
Query 1801 tttttctttttgtttcttgtctcttctttcttacaagattcgccgcatttttttcgtttt 1860
||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1837 TTTTTCTTTTTGTTTCTTGTCTCTTCTTTCTTACAAGCTTCGCA-CATTTTTTTCGTTTT 1895
Query 1861 tttCCCCGGCCATTTATCGGTG-GACATGAGGTCAATACCTGTTTAATAATTTGACATGA 1919
||||| ||||||||||||||| |||||||||||||| |||||| |||||||||||||||
Sbjct 1896 TTTCCTCGGCCATTTATCGGTTTGACATGAGGTCAATTCCTGTTCAATAATTTGACATGA 1955
Query 1920 GGTCAATTTCTTTACAATTATTTACTGTTGCACAGCTCTGTTTTCTGCAAGTGTAGATCT 1979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1956 GGTCAATTTCTTTACAATTATTTACTGTTGCACAGCTCTGTTTTCTGCAAGTGTAGATCT 2015
Query 1980 ATGTAAACCCAAAACTAATATATATATACA 2009
|||||||||||||||||||||||||| |||
Sbjct 2016 ATGTAAACCCAAAACTAATATATATACACA 2045
> AT5G60022.1 | Symbols: | other RNA | chr5:24167141-24170261
REVERSE LENGTH=1247
Length=1247
Score = 547 bits (296), Expect = 1e-154
Identities = 371/402 (92%), Gaps = 25/402 (6%)
Strand=Plus/Minus
Query 1411 ACCTTATAACACCAGTGTGGAGCTGGTGATGCAAGACACTAGCATTCTTGGTGCAGAAAG 1470
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 377 ACCTTATAACACCAGTGTGGAGTTGGTGATGCAAGACACTAGCATTCTTGGCGCAGAAAG 318
Query 1471 CCATCCTCTTCATCTTCATGGGTTCAACTTCTTTGTGGTTGGCCAAGGCTTTGGGAATTT 1530
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 317 CCATCCTCTTCATCTTCATGGGTTCAACTTCTTTGTTGTTGGCCAAGGGTTTGGGAATTT 258
Query 1531 CGACCCGAACAAGGATCCTAAAAACTTCAACCTTGTTGACCCAATAGAGAGGAACACAAT 1590
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 257 CGACCCGAACAAGGATCCTAGAAACTTCAACCTTGTTGACCCAATAGAGAGGAACACAGT 198
Query 1591 CGGTGTGCCATCTGGTGGATGGGCTGCTATTCGATTCCTTGCAGATAACCCAGGAGTGTG 1650
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 197 CGGTGTGCCATCTGGTGGATGGGCTGCTATTCGATTCCTTGCAGATAACCCAGG--T--- 143
Query 1651 GTTCATGCACTGTCACTTGGAAGTACATACCAGTTGGGGTCTGAGGATGGCTTGGCTTGT 1710
| | | | | || ||| | |||||||||||||||||||||||||||||
Sbjct 142 ----A---A--G--A---G-AA--ACA--C-AGTTGGGGTCTGAGGATGGCTTGGCTTGT 103
Query 1711 TCTTGATGGAGATAAACCTGATCAGAAACTTCTTCCTCCTCCTGCAGACTTGCCCAAATG 1770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 102 TCTTGATGGAGATAAACCTGATCAGAAACTTCTTCCTCCTCCTGCAGACTTGCCCAAATG 43
Query 1771 CTGAGAATTCTTTCCCCATGATTCAAGTCctttttctttttg 1812
||||||||||||||||||||||||||||||||||||||||||
Sbjct 42 CTGAGAATTCTTTCCCCATGATTCAAGTCCTTTTTCTTTTTG 1
Score = 141 bits (76), Expect = 3e-32
Identities = 90/97 (93%), Gaps = 0/97 (0%)
Strand=Plus/Minus
Query 1 ACCTGCTCTAAACAACGCCTCGGTGTCCAACCTCACTTAAATGGCGTTTCAGCTTCTCTT 60
||||||||||||||||||||| |||||||| ||||||| ||||||||| ||||| ||| |
Sbjct 470 ACCTGCTCTAAACAACGCCTCCGTGTCCAAGCTCACTTCAATGGCGTTACAGCTACTCCT 411
Query 61 AGCTGTATTCTCTTGTGTTCTTCTTCTACCTCAACCT 97
||||||||||||||||||||||||||| |||||||||
Sbjct 410 AGCTGTATTCTCTTGTGTTCTTCTTCTTCCTCAACCT 374
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99547680735
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5