BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496141
Length=822
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60030.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 651 0.0
> AT5G60030.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G75335.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:24172082-24172975 REVERSE LENGTH=894
Length=894
Score = 651 bits (352), Expect = 0.0
Identities = 609/722 (84%), Gaps = 61/722 (8%)
Strand=Plus/Plus
Query 1 TTCGAGCTTCGTCCGATGAAGACAGTCACCGGAAGAGTTATTAGTGCTGAACCAATCTCC 60
|||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 1 TTCGAGCTTCTTCCGATGAAGACTGTCACCGGAAGAGTTGTTAGTGCTGAACCAATCTCC 60
Query 61 CTTTCCAAGGCGGCTACGCTTCTCTCTGGATTCGCTTCCTCCGATAATGGCGCCTCTCAA 120
|| || |||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 CTCTCAAAGGCGGCTAAGCTTCTCTCTGGATTCGCTTCCTCTGATAATGGCGCCTCTCAA 120
Query 121 GACGTTAGTGCGTACCTCCGACGAGCCTCCGCCGCCTTCACCGAATTGAAGAGTTTCCAC 180
|||||||||||||||||||| ||||||||||| |||||||| ||||| ||||||||||||
Sbjct 121 GACGTTAGTGCGTACCTCCGGCGAGCCTCCGCTGCCTTCACTGAATTAAAGAGTTTCCAC 180
Query 181 AGGGAGATTAAATCAAAGGATG-CGAAGCCAAGCTCCG-TCAGGGAGGTTAAATCAAAGG 238
|||||||||||||||||||| | ||||||||||||||| | |||||| |||||||| ||
Sbjct 181 AGGGAGATTAAATCAAAGGA-GACGAAGCCAAGCTCCGAT-AGGGAGACTAAATCAACGG 238
Query 239 AGACGAAGCCAAGCTCCGACGCAAGGCGTGAGCGGGATGTCACTGGCGAATTAGACGGA- 297
||||||||| ||||||||| |||| | |||||||| |||||| || |||||| |||||
Sbjct 239 AGACGAAGCAAAGCTCCGATGCAAAGAGTGAGCGGAATGTCATTGACGAATTCGACGGTC 298
Query 298 GAGAAGATTCGTTACCGGAAAAGTGGAGCTGTGAGTGAGGAATCAGTTTATGGTAGGGAT 357
| |||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||
Sbjct 299 G-GAAGATTCGTTACCGGAATAGTGAAGCTGTGAGTGTGGAATCAGTTTATGGTAGGGAA 357
Query 358 CAG-GATGAGATGAAAAAGAAGAAGAGCAAGAGCAAGAATAACAAAGACGAAGATGTTGT 416
| | ||||||| |||| || ||||| | |||||| | | | | | | ||||||||
Sbjct 358 C-GTGATGAGA--AAAA-GATGAAGA--A-GAGCAA-AG-A-C---G-C-A-GATGTTGT 401
Query 417 TGGTgaggaggtgaaggagaagctggaag-atgagcaaaggag--a-ga---a-g--aga 466
|| |||| ||||||| |||||| |||||| | ||||||||||| | || | | |||
Sbjct 402 TGATGAGAAGGTGAACGAGAAGTTGGAAGCA-GAGCAAAGGAGCGAAGAGCGAAGGGAGA 460
Query 467 gaaagaaggagaagaagaagaa------caa-aga-a-gaagatgttgttgatgagaagg 517
|||||||||||||||||||||| ||| | | | ||||||||||||||||||||||
Sbjct 461 GAAAGAAGGAGAAGAAGAAGAAGAAGAACAACAAAGACGAAGATGTTGTTGATGAGAAGG 520
Query 518 tgaaggagaagttggaagacaagcaaaggagcgaagagagaaaggagagaaagaaggaga 577
||||||||||||| |||||| |||||| ||||| ||| ||||||||| |||||||| | |
Sbjct 521 TGAAGGAGAAGTTAGAAGACGAGCAAAAGAGCGCAGATAGAAAGGAGCGAAAGAAG-A-A 578
Query 578 agaagagcaagaggaacaaagacaaagagaaagaggttgttgatgagaaggtgaaggaga 637
||||||||||| |||||| ||| || | || |||||||||||||||| | | | |
Sbjct 579 -GAAGAGCAAGAAGAACAACGAC---GA-A--GATGTTGTTGATGAGAAGG--A-G-A-A 626
Query 638 agtt-gaaagacgagcaaaggagtgaagagagaaagaaggagaagaagaagaa-gaggaa 695
||| ||| |||||||||| ||| | ||||| |||| || | |||||||| || || |||
Sbjct 627 -GTTAGAA-GACGAGCAAAAGAGCGCAGAGATAAAGGAGAAAAAGAAGAACAAAGACGAA 684
Query 696 ga 697
||
Sbjct 685 GA 686
Score = 67.6 bits (36), Expect = 2e-10
Identities = 38/39 (97%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 219 CAGGGAGGTTAAATCAAAGGAGACGAAGCCAAGCTCCGA 257
||||||| |||||||||||||||||||||||||||||||
Sbjct 180 CAGGGAGATTAAATCAAAGGAGACGAAGCCAAGCTCCGA 218
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40036615159
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5