BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496144
Length=1125
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60060.1 | Symbols: | Protein of unknown function (DUF295) ... 1543 0.0
> AT5G60060.1 | Symbols: | Protein of unknown function (DUF295)
| chr5:24188600-24189724 REVERSE LENGTH=1125
Length=1125
Score = 1543 bits (835), Expect = 0.0
Identities = 1036/1129 (92%), Gaps = 29/1129 (3%)
Strand=Plus/Plus
Query 6 TTCTT-CTTCTCAATGGTCTGATCTTCCTTTAGATATGCTTGAGTTAATCTCCGATCGTC 64
||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 17 TTCTTCCTTCTCAATGGTCTGATCTTCCTTTAGATATTCTTGAGTTGATCTCCGATCGTC 76
Query 65 TTGACGACGACGACTCATCAGACACCATTGATCTCCTCTGTCTCCGCTCTGTATGTGCCA 124
||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 77 TTGAC--C-ACGACTCATCAGACACCATTCATCTCCTCTGTCTCCGCTCTGTATGTGCCA 133
Query 125 CTTGGCGTCTCTCTCTTCCTCTCTCCAACAACAACAACAAAAATCC-TTTGTCTAAATTC 183
||||||||||||||||||||||||||||| | || ||| || || |||||||||||||
Sbjct 134 CTTGGCGTCTCTCTCTTCCTCTCTCCAAC-A-AA-AAC---AA-CCGTTTGTCTAAATTC 186
Query 184 CCAAAGTATCTTCCTTTTTGGTCATCATCTTCTTCATCCTCTGGTTTCTTCATTCTGAAA 243
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 187 CCAAAGTATCTTCCTTTTTGGTCATCTTCTTCTTCATCCTCTGGTTTCTTCACTCTGAAA 246
Query 244 CAGAGCAGTGTCTATGAACTCGAAGCTCCTTTGAATCCGAGAAGCTGGT-TGGTTAAGAT 302
|| |||| ||||||| |||| |||||||||||||||||||||| || || |||||||| |
Sbjct 247 CAAAGCAATGTCTATAAACTTGAAGCTCCTTTGAATCCGAGAA-CTTGTCTGGTTAAGCT 305
Query 303 TCAAGAGACATCTCCAGGGAATATGCGAGTCTTGGATCTCTTCTCAAACGACAGAATCTG 362
|||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 306 TCAAGAGACAACTCCAGGGATTATGCGAGTCTTGGATCTATTCTCAAACGACAGAATCTG 365
Query 363 TTTCTTACCAGAGAATTTCCCGGAAAAGATCGACTTGCAGGAGTTTCATGTGAGATTGGT 422
||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 366 TTTCTTACCTGAGAATTTCCCGTCAAAGATCGACTTGCAGGAGTTTCATGTGAGATTGGT 425
Query 423 TCGTAGAACTTATCGTATGGACTACGCAAACAATGGTGGT-GAG-A-TTTCTTGTTTCTG 479
||||||||||||||||||||| |||||||||||||||||| | | | | ||||||||||
Sbjct 426 TCGTAGAACTTATCGTATGGAGTACGCAAACAATGGTGGTGGTGCAGTGCCTTGTTTCTG 485
Query 480 GTCTTTAAATTCCGACAAAGTTGTGATTTTGTCTTCAGGGGAAGACTCAGCGATAGTGGC 539
|||| | |||||||||||||||||||||||||||||||||||||||| |||||| | ||
Sbjct 486 GTCTCTGCATTCCGACAAAGTTGTGATTTTGTCTTCAGGGGAAGACTCGGCGATAATTGC 545
Query 540 TATTCACAGTGGTGGGAAATTAGGGCTTTTGAAGAGTGGAAACGA-AAAAAGATGGAGAA 598
|||||||||||||||||||||||| ||||||||||||||||||| |||| ||||| ||
Sbjct 546 GATTCACAGTGGTGGGAAATTAGGGTTTTTGAAGAGTGGAAACGATGAAAA-ATGGAAAA 604
Query 599 TTTTGGATAATTCATGGAATGTGATTTACGAAGACATAATGTTGTACAGAGAGAATTGTT 658
||||||||||||||||||||||||||||||| ||||||||||| |||| ||| ||| |||
Sbjct 605 TTTTGGATAATTCATGGAATGTGATTTACGAGGACATAATGTTATACAAAGACAATCGTT 664
Query 659 GCATCGTTGTAGACGATAAGGGTAAAACCGTAATTTACGATGTGGATTTCAAGGTTTCGG 718
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 665 GCATCGTTGTAGATGATAAGGGCAAAACCGTAATTTACGATGTGGATTTCAAGGTTTCGG 724
Query 719 ATTTGGCTGAAGGTTTGGTCGGAGGAGGCGGTCACAAGAAGCATCTTGTGGAATATCCCG 778
|||||||||||||||||||||||||||| ||||||||||| ||||| ||||||| | |||
Sbjct 725 ATTTGGCTGAAGGTTTGGTCGGAGGAGGAGGTCACAAGAAACATCTAGTGGAATGTTCCG 784
Query 779 GCGGAGAAGTGTTGCTTGTTGACAAATACGTGAAACAC-GTTTGGTGCAAATCGGAGGTT 837
||||||||||||| ||||| ||||||||||||||| || ||||||||||||||||| ||
Sbjct 785 GCGGAGAAGTGTTTCTTGTGGACAAATACGTGAAA-ACCGTTTGGTGCAAATCGGATATT 843
Query 838 TCGAAATCTGCGGTTGAGTTTAGAGTTTATAAGCTgaagagagaagagaagagatgggaa 897
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 844 TCGAAATCTGTGGTTGAGTTTAGAGTTTATAATCTGAAGAGAGAAGAGAAGAGATGGGAA 903
Query 898 gaagtgagagaaTTAGGAGATGTGGCTCTCTTTATTGGAGATGACTGTTCTTTCTCCGTT 957
||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 904 GAAGTGAGAGACTTAGGAGATGTTGCTCTGTTTATTGGAGATGACTGTTCTTTCTCCGTT 963
Query 958 CAGATTCCGGCCGGAGATTCGGCCGGAGGTTTTATATTCTATAGAGATTATAGGAATGGA 1017
|||| |||||||||||||| ||||||||||| ||||||||||| |||||||||||||||
Sbjct 964 CAGAATCCGGCCGGAGATTTAGCCGGAGGTTTCATATTCTATAGTGATTATAGGAATGGA 1023
Query 1018 GGAAGAAGCAGAGGTG-TTTGCAGTGACGGTGATGGTGTCTTCAATGTGGAATTTGAGAT 1076
|||||||||||||| | ||||||| |||||||||||||||||||| ||||| | | |
Sbjct 1024 GGAAGAAGCAGAGG-GATTTGCAGCGACGGTGATGGTGTCTTCAACGTGGA-T---A--T 1076
Query 1077 GCAGAGTGATTTTGTATTTCCTATAAAGCCCAAATGTTTTGGCCCATAA 1125
|||| |||||||||| ||| ||||||||||||| | |||||||||||||
Sbjct 1077 GCAGGGTGATTTTGTGTTTTCTATAAAGCCCAATTATTTTGGCCCATAA 1125
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55170398955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5