BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496146
Length=1155
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60080.1 | Symbols: | Protein kinase superfamily protein | ... 1410 0.0
> AT5G60080.1 | Symbols: | Protein kinase superfamily protein
| chr5:24193181-24194909 REVERSE LENGTH=1134
Length=1134
Score = 1410 bits (763), Expect = 0.0
Identities = 1032/1159 (89%), Gaps = 29/1159 (3%)
Strand=Plus/Plus
Query 1 ATGAGTAATCGTTTCATATGCTGTTTCGGAGGCGGAAGCTCAAGTAAAGTAGTGCAAGAT 60
||||||||||||||| |||||||||| ||||||||| |||||||||||||| ||||||||
Sbjct 1 ATGAGTAATCGTTTCTTATGCTGTTTAGGAGGCGGAGGCTCAAGTAAAGTAATGCAAGAT 60
Query 61 CCATCGGAACTACCGCAACAGCAACCACAAGAATCACCGGATCCATCGGATTCATCCGAT 120
|||||||||||||||| | | | | |||| || || ||||| | ||||||||||| |||
Sbjct 61 CCATCGGAACTACCGC-A-A-C-A--ACAACAACCATCGGATTCGTCGGATTCATCGGAT 114
Query 121 ACATCGGAACAACCAAATTCACAACCGCATTCATCGGGGGGAAGTGGTGACGACGAAGCT 180
||| ||| |||| |||| | || | | | | | ||| | ||||||||||| |
Sbjct 115 ACACCGGGACAA-CAAAGT--GAA--G--GTGA-C--GACGAA--GCTGACGACGAAGAT 162
Query 181 CCGAGTACGGGAGTTAAATTTCGATGGCGTGAAATCGAAGACGGAACCGAAAACTTCGGG 240
|||||| | |||||||||||||||| ||| ||| ||| |||||||| ||||||| |
Sbjct 163 CCGAGTTCTATAGTTAAATTTCGATGGAATGATGTCGTAGAGGGAACCGATAACTTCGCG 222
Query 241 ATAACACATTTGATCGGCCAAGGCAA-CTACGGCAAAGTCTATCGCTGCAATTTCCCAAG 299
||||||||||||||||||||||| || |||||||||||||||||||||||| ||||| ||
Sbjct 223 ATAACACATTTGATCGGCCAAGG-AACCTACGGCAAAGTCTATCGCTGCAAGTTCCC-AG 280
Query 300 AA-TTCATAAGGTTGGAGCTGCAAAGATTCATAATAATAATATCACAGCTGCTCTTAGTG 358
|| ||| ||||||||||||||||||||||||| |||| |||||||| || ||||||||
Sbjct 281 AAGGTCACAAGGTTGGAGCTGCAAAGATTCATAGTAATGGTATCACAGATGGTCTTAGTG 340
Query 359 AGTTCATAGCAGAGACTACAACGTTATATGCAGCTGATCACCCAAATGTGATTAAACTTC 418
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 341 AGACCGTAGCAGAGACTACAACGTTATATGCAGCTGATCACCCAAATGTGATTAAACTTG 400
Query 419 TTGGCAAATATTTTGGCATACAAAAAAGTGTCCTAGTCTACGAATTCATGCCTAATGGCT 478
| |||||||||| ||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 401 TCGGCAAATATTATGGGATGGAAAAAAGTGTCCTAGTCTACGAATTCATGCCTAATGGCT 460
Query 479 CTCTTGACCACCATCTCTTTGCTCAAGCAAGGCAGGTTCAGGGTCTAACGAAGCCAACTC 538
||||||||||||||||||||||||| || ||||||||||||||||| || |||||||
Sbjct 461 CTCTTGACCACCATCTCTTTGCTCACGCGAGGCAGGTTCAGGGTCTTACTCTGCCAACTA 520
Query 539 GGGTTTTGGATTGGAACACAAGGATGAGAATTGCTGTGGGTGTAGCCGAAGGTCTGGTTT 598
||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||| ||||
Sbjct 521 GGGTTTTGGATTGGAACACGAGGTTGAGAATTGCTGTTGGTGTAGCCGAAGGTCTTGTTT 580
Query 599 ATGTACACCAGGGGCTTTATGCGATTCACAGAGATGTCAAAGTCGAAAACATCTTACTTG 658
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 581 ATGTACACCAGGGGCTTTATGCGATTCACAGAGATATCAAAGTCGAAAACATTTTACTTG 640
Query 659 ACAATAATTTTGTGCCGAAGTTGAGTGATTTTGGATTTGCGACTAAGATCGTTTACAATT 718
|||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 641 ACAAGGATTTTGTGCCGAAGCTGACTGATTTTGGATTTGCGACTAAGATCGTTTACAATA 700
Query 719 CAAACGGTGTTGAGAGGCAGAGGGAGTTCAATTCGAGTGGAACTCAAGGATACATAGCAC 778
| ||||||||||||| ||||||||||||| || ||||||||||||||||||||||||
Sbjct 701 GTGATGGTGTTGAGAGGCTGAGGGAGTTCAATACGCGTGGAACTCAAGGATACATAGCAC 760
Query 779 CGGAAGCAGAGGAGTTCGGGTTGATTTCGACAAAGTCCGATATCTATAGCTATGGAGTTT 838
|||||||||| ||||||| |||| ||||||| |||||||||||||||||||||||||||
Sbjct 761 CGGAAGCAGATGAGTTCGCGTTGGTTTCGACTAAGTCCGATATCTATAGCTATGGAGTTC 820
Query 839 TTCTGTTAGTGCTTTTAACTGGAAGGAAAGCTTATGATATGAAGAGACCTGTTGCGAAAG 898
||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||
Sbjct 821 TTCTGTTAGTGCTTTTAACTGGAAGGAAAGCCTATGATCTGGCGAGACCTGTTGCGAAAG 880
Query 899 AGAAACTCACTGATTGGTTAATGCCAGTATGGACTAGACTGGAGTATGCGCCTATGGTAG 958
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 881 AGAAACTCACTGATTGGTTAATGCCAGTATGGACTAGATTGGAGTATGCGCCTATGATAG 940
Query 959 TTGATGTTGCCCTCGGTAATAAGTATTCGGTTGAAGGTTTAAACCGCCTATTTCAAACTG 1018
|||||||||| ||||||||||||||||| |||||||||||||| | ||| |||||||||
Sbjct 941 TTGATGTTGCGCTCGGTAATAAGTATTCAATTGAAGGTTTAAACAGACTACTTCAAACTG 1000
Query 1019 CGAGGATGTGTATAAACGCACAGGCACTTGAACGGCCTGCGATGGATTTTGTGGAAACGA 1078
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 1001 CGAGGATGTGTATAAACCCACAGGCACTTGAACGGCCTGCCATGGATTTTGTGGAAACGA 1060
Query 1079 TGGTTCGTGAAGCTGCAGCTTTCCCAGTACTCCCAGAGGAGACCCCTG-TGACCGAGAGG 1137
||||||||||||||||||||||||| || | || | ||||| |||||| ||| ||||||
Sbjct 1061 TGGTTCGTGAAGCTGCAGCTTTCCCGGT-C-CCAA-AGGAG-CCCCTGGTGAAAGAGAGG 1116
Query 1138 -TGTTCGACTTCGACATAA 1155
| ||||||||||| ||||
Sbjct 1117 AT-TTCGACTTCGAAATAA 1134
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56676415305
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5