BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496147
Length=1224
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60090.1 | Symbols: | Protein kinase superfamily protein | ... 1535 0.0
> AT5G60090.1 | Symbols: | Protein kinase superfamily protein
| chr5:24196082-24197725 REVERSE LENGTH=1197
Length=1197
Score = 1535 bits (831), Expect = 0.0
Identities = 1088/1210 (90%), Gaps = 25/1210 (2%)
Strand=Plus/Plus
Query 1 ATGAAACGTTTCTTTTGCTGTCTCAAAGGAGGAAGCTCACGTAACGCAGGGCAAGGTAAC 60
|||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1 ATGAAACGTTTCTTATGCTGTCTCAAAGGAGGAAGCTCAAGTAACGCAGCGCAAGGTAAC 60
Query 61 GACGAGAACGACGAAGTAAACCTCGACCGACC-ATTTGGGAATAACGAGCGCCTCAATCA 119
|||||||||||||||||| | |||| || || |||||||||||||||||||||||||||
Sbjct 61 GACGAGAACGACGAAGTAGATGTCGAGCG-CCTATTTGGGAATAACGAGCGCCTCAATCA 119
Query 120 TCTTTGGAGAAATCATCTCTC-ACTTCCTGACGATCGTGAAGTTGCAGATCCCACTGCTC 178
||||||||||||||||||| | ||| |||||||||||||||||||||||||| ||||||
Sbjct 120 TCTTTGGAGAAATCATCTC-CGACTCCCTGACGATCGTGAAGTTGCAGATCCGACTGCT- 177
Query 179 G-TTTTTTCCCTA-TATCTCCACCTCTACCTGATAATTGTGGAGCATCATTTCTATGGCG 236
| | | || || | |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 178 GCTCTGTTACC-AGTATCTCCACCTCTACCTGATAATTGTGGAGAATCATTTCTATGGCG 236
Query 237 CGAACTCGTAGACGGAACAATAAACTTCCGGGACGAATATTT-TCTCGGCAGAGGCAACT 295
|| |||||| ||||||| ||||||||||||||||||| ||| |||||||| ||||||||
Sbjct 237 TGAGCTCGTAAACGGAACCATAAACTTCCGGGACGAAT-TTTATCTCGGCAAAGGCAACT 295
Query 296 TCGGCGAAGTCTATCGCTGCCGTTTCTCAAGACTTAATGAGGATGGAGCCGTAAAGATTC 355
||||||||||| |||||||| ||||||||||||||||| ||||||||| |||||| |||
Sbjct 296 TCGGCGAAGTCCATCGCTGCTATTTCTCAAGACTTAATGTGGATGGAGCGGTAAAGGTTC 355
Query 356 AAAAACCAGACAATCCAACTGGTCATGTTGAGTTCTTGGCAGAGGTTACAACGTTACATG 415
|||| ||| | |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 356 AAAATCCACAGAATCCAACTGGTCATGTTGAGTTCTTGGCAGAGGTTACAACGTTACGTG 415
Query 416 CAGCTAATCACCCAAATGTGATTAGACTTCTTGGCCATTGTTACGGCCAAAGGAACCGTG 475
|| ||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 416 CAACTAATCATCCAAATGTGATTAGACTTCTTGGCAACTGTTACGGCCAAAGGAACCGTG 475
Query 476 CTATAGTCTACGAATTCATGCCCAATGGCTG-TCTTGAGCGTCACATCTTTGCACACGCA 534
||||| | |||||||||||| |||| || | ||||||||||||||||||||||||| |
Sbjct 476 CTATAATTTACGAATTCATGGCCAACGGA-GATCTTGAGCGTCACATCTTTGCACACAAA 534
Query 535 ACGAGGGTGCAGGGTCCGTTTCCTCAGGGTCTA-CAACTACCAATTAGGGTTTTGAATTG 593
|||| |||| |||||||| ||| |||||||| || |||||||||||||||||| ||||
Sbjct 535 ACGATGGTGGAGGGTCCGCGACCTAAGGGTCTAACA-CTACCAATTAGGGTTTTGGATTG 593
Query 594 GGATACGAGGATGAGAATTGCTTTGGGTGTAGCCAAGGGTCTGGTTTATCTACACCAGGA 653
| | |||||||||| ||||||| |||||||||||||||| ||||||||||||||| ||||
Sbjct 594 GTACACGAGGATGAAAATTGCTGTGGGTGTAGCCAAGGGCCTGGTTTATCTACACGAGGA 653
Query 654 GCTGAAAGTGATTAACCGAGATGTCAAGGCCGGAAATAT-TCTACTTGATGCAAATTTTG 712
|||||||||||||||| ||||||||||||||||||| || | ||||||||||| ||||||
Sbjct 654 GCTGAAAGTGATTAACAGAGATGTCAAGGCCGGAAACATAT-TACTTGATGCAGATTTTG 712
Query 713 TGCCAAAGCTGACTGATTTTGGATTGGCGACTAAAATCGATGTAGATGAAAACGGTGTTG 772
| || |||||||| ||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 713 TTCCGAAGCTGACAGATTTTGGATTGGCGACTAAAATCGTTGAAGATGAAAACGGTGTTG 772
Query 773 AGAAGCAG-ATCCTGATCAATCCGATGAAGGGATCTTTGGGATACATTGCACCGGAAGGA 831
|| ||||| | | ||||| ||||||||||| |||| |||||||||||||||||||||||
Sbjct 773 AGCAGCAGCAACG-GATCATTCCGATGAAGGCATCTATGGGATACATTGCACCGGAAGGA 831
Query 832 GAGATTTCCGGGTTTGTTTCGACTAAGACTGATGTCTATAGCTATGGAGCTCTTCTGTTA 891
||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 832 GAGATTTCCTGGTTGGTTTCGACTAAGACTGATGTCTATAGCTATGGAGCTTTTCTGTTA 891
Query 892 GTGCTTTTCACCGGAAGGCAGCCTTTTTATGT-GAAGAAACCTGTTGGGATTAGGGAGAA 950
|||||||||||||||||| | ||||||||| | | | || |||| ||||| | ||||
Sbjct 892 GTGCTTTTCACCGGAAGGAAACCTTTTTAT-TCGGATAATCCTGCTGGGAAAA---AGAA 947
Query 951 TCTCACTGAATGGTTTATCAGAATATTGCCTAG-ACTCGAGGATGCGCCTGTGAAAGTTG 1009
||||||||| |||||| | ||| ||| | ||| | ||||||||||||||||||||| ||
Sbjct 948 TCTCACTGATTGGTTTTTGAGAGTATGGGATAGGA-TCGAGGATGCGCCTGTGAAAGCTG 1006
Query 1010 ATGTTGCGCTCGGTTATAGGTATTCGGTTGAAGGTTTAAAGAAGATATTTGATACTGCGA 1069
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1007 ATGTTGCGCTCGGTAATAGGTACTCGGTTGAAGGTTTAAAGAAGATATTTGATACTGCGA 1066
Query 1070 GGATGTGTTTAAAGACAGAGCGACTTGAACGGCCTACTATGAGTGATGTGGAAGCAATGG 1129
|||||||| ||||| ||||| |||||||||||||||| |||||||| |||||||| ||||
Sbjct 1067 GGATGTGTATAAAGGCAGAGAGACTTGAACGGCCTACCATGAGTGAAGTGGAAGCGATGG 1126
Query 1130 TTCTCGAAGCTGCATCTTTCCCGGTCCAAGTGCCGCCCCAGGTGAAAAGGAGGCGTTCGG 1189
|||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1127 TTCTCGAAGCTGCAGCTTTCCCGGTCCAAGTGCCGCGCCAGGTGACAAGGAGGCGTTCGG 1186
Query 1190 CTTCGACATA 1199
|||| |||||
Sbjct 1187 CTTCAACATA 1196
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60140252910
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5