BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496148
Length=1961
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60100.2 | Symbols: PRR3 | pseudo-response regulator 3 | chr... 1439 0.0
> AT5G60100.2 | Symbols: PRR3 | pseudo-response regulator 3 | chr5:24197998-24201364
REVERSE LENGTH=2182
Length=2182
Score = 1439 bits (779), Expect = 0.0
Identities = 942/1020 (92%), Gaps = 13/1020 (1%)
Strand=Plus/Plus
Query 946 CAGCTCTAGCGGAAGCGGAAGTGAGAGTGGAATACAGGACAAGAAGTCGGTGAAACCTGA 1005
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1039 CAG-TCTAGCGGAAGCGGAAGTGAGAGTGGAATACATGACAAGAAGTCGGTGAAACCTGA 1097
Query 1006 AAGCACCGAAGGGTCAGAAAATGATGCCAGCATCAGTGATGAACTCGA-GAA-GGAAGAT 1063
||||||| |||||||||||||||||||||||||||||||||||| | | ||| | ||| |
Sbjct 1098 AAGCACCCAAGGGTCAGAAAATGATGCCAGCATCAGTGATGAACAC-AGGAATGAAAG-T 1155
Query 1064 GGGAGTAGTGGTGGTTTGAGTAACCGAGATGGTGGAAGTGATAACGGGAGTGGAACTCAG 1123
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 1156 GGGAGTAGTGGTGGTTTGAGTAACCAAGATGGTGGGAGTGATAACGGGAGTGGAACTCAG 1215
Query 1124 AGTTCTTGGACCAAAAGAGCCAGTGATACTAAGAGCACCTCGCCTTCAAATCAGTTGCCC 1183
||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1216 AGTTCTTGGACAAAAAGAGCCAGTGATACTAAGAGCACCTCGCCTTCAAATCAATTTCCC 1275
Query 1184 GATGCACCCAATAAGAAAGGAACCTATGGAAATGGATGGGTACGTGTTAATAAACTGAAG 1243
||||||||||| |||||||||||||||| ||||||||| | || |||||||| |||||||
Sbjct 1276 GATGCACCCAACAAGAAAGGAACCTATGAAAATGGATGTGCACATGTTAATAGACTGAAG 1335
Query 1244 GAGGTTGAAGATCAGAAAGAACAAATAGGCACGGGTTCGCAGACAGGTATGTCTATGAGT 1303
|||| |||||||||||| ||||||||||||||||| || |||||||| ||||||||||||
Sbjct 1336 GAGGCTGAAGATCAGAAGGAACAAATAGGCACGGGATCACAGACAGGAATGTCTATGAGT 1395
Query 1304 AAGAAAGCTGAAGAA-CACGGAGATCTGGAAAAGGATGCAAAGTATTCTGTTCAAGCTTT 1362
||||||||||||||| || |||||||| |||||| |||||||||||||||||||||||||
Sbjct 1396 AAGAAAGCTGAAGAACCA-GGAGATCTTGAAAAGAATGCAAAGTATTCTGTTCAAGCTTT 1454
Query 1363 GGAGAGAAACAATGATGATACGCTGAATCGCTCTTCTGGTAACTCACAAGGAGAAAGCAA 1422
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 1455 GGAGAGAAACAATGATGACACGCTGAATCGCTCTTCTGGTAACTCACAAGTAGAAAGCAA 1514
Query 1423 AACAGCTTCATCTAACCGAGAAGTTTTGCAATCACTCGAGCAAACTCTGAAAAATCCAAG 1482
| || |||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 1515 AGCACCTTCATCTAACCGAGAAGATTTGCAATCACTCGAGCAAACTCTGAAAAAAACAAG 1574
Query 1483 AGAGGCTGGAGATTACAGAA-TCGGTGATCAAAGTATTTTGAGGCATTCAAATCACTCTG 1541
||||| | ||||||||| || ||||||||| |||| | |||||||||||||||| |||||
Sbjct 1575 AGAGGATAGAGATTACA-AAGTCGGTGATCGAAGTGTGTTGAGGCATTCAAATCTCTCTG 1633
Query 1542 CGTTCTCAAAATACAATAATGGTGCTACTTCTGCTAATAAGGCTCCAGAAGAAAACGTGG 1601
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1634 CATTCTCAAAATACAATAATGGTGCTACTTCTGCTAAGAAGGCTCCAGAAGAAAATGTGG 1693
Query 1602 GAAGTTGTTCTCCTCATGGCAGTCCTGTTGGGAAACTGTTGGGTTCGGGTTCGAGCAGTG 1661
||||||||||||||||| ||||||| ||| ||||||||||||||| |||| |||||||
Sbjct 1694 AAAGTTGTTCTCCTCATGACAGTCCTATTGCAAAACTGTTGGGTTCGAGTTCAAGCAGTG 1753
Query 1662 ACAATCCTTTAAATCAGCAGTCTAGTGGAAGTGACCGTTCGGCACAAAGAGAAGCTGCTT 1721
||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 1754 ACAATCCTTTAAAGCAGCAGTCTAGTGGAAGTGACCGATGGGCACAAAGAGAAGCTGCTT 1813
Query 1722 TGATGAAGTTTCGTCTTAAACGTAAAGAGCGATGTTTTGAGAAGAAGGTAAGGTACCATA 1781
||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1814 TGATGAAGTTTCGCCTTAAACGTAAAGAGCGATGTTTTGAGAAAAAGGTTAGGTACCATA 1873
Query 1782 GCAGGAAGAAACTAGCCGAGCAACGGCCTCGCGTCAAAGGTCAATTCATTCGCAATCCTT 1841
|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 1874 GCAGGAAGAAACTAGCTGAGCAACGGCCTCACGTCAAAGGTCAATTCATTCGCAAGAG-- 1931
Query 1842 TGGATGCTTATAAATCAGGAAGTGACGACAGTTGAACAACAAAATTGATATAGAAGAGAG 1901
||||| | |||||||||||||||| |||| |||||||||||||||| ||||||||||||
Sbjct 1932 -GGATGATCATAAATCAGGAAGTGAAGACAATTGAACAACAAAATTGGTATAGAAGAGAG 1990
Query 1902 ATCCATTTCCAAGATCTGAAGAACCAGAAGAAACTTTCACAAAGTGGCAttttttttttt 1961
||||| ||||| ||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1991 ATCCACCTCCAATATCTGAAGAAC-AGAAGAAAATTTCACAAAGTGGCATTTTTTTTTTT 2049
Score = 1279 bits (692), Expect = 0.0
Identities = 888/975 (91%), Gaps = 43/975 (4%)
Strand=Plus/Plus
Query 1 TTTAAAATTTCTTTCTTTTTA--CATATTTTAGTAGCAA-TTGGATTCTGTAAAGTTGTT 57
|||||| |||||||||||||| | |||||||||||||| |||| |||||||||||||||
Sbjct 3 TTTAAATTTTCTTTCTTTTTATTC-TATTTTAGTAGCAATTTGG-TTCTGTAAAGTTGTT 60
Query 58 GGTAAGAGAAAAAGTTAGATACGAATCAAAACATTTTTGGATGATTAGGTGATTAAATTG 117
||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 61 GGTAAAAGAAAAA--TAGATACGAATCAAAACATTTTTGAATGATTAGGTGATTAAA-TG 117
Query 118 CTAAG-----CA-A--AA-C----ATCTGTTCtttttttcgttgtaatttgtttttttGA 164
||||| || | || | |||||||| |||||| ||||||||||| |||||
Sbjct 118 CTAAGCAAATCAGATTAAGCAAAAATCTGTTC-TTTTTTGGTTGTAATTTG-GTTTTT-C 174
Query 165 AAGTCAGGTATGGTAAGAGATTCTGGTGGTGGTGGTGTTCTTCATTTGAGGTT-T-TGGT 222
||||||| |||||| ||||||||||||||||||||||||| ||| || | || | ||
Sbjct 175 AAGTCAGATATGGTGAGAGATTCTGGTGGTGGTGGTGTTCATCA-ATG-GATTATGTGAA 232
Query 223 GAAGGGATTAAAATAAGTTTGGGGAAAGAAGAAATGTGCAAGTGTTATGTCAGTGTAGAG 282
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 233 AAAGGGATTAGAATAAGTTTGGGGAAAGAAGAAATGTGCAAGTGTTATGTCAGTGTAGAG 292
Query 283 GGGAAGTTTCTGCAGAATCTTAGCTGTTGTTTGATGCTGCTTCTATTCTATCTTGTTCAT 342
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 293 GGGAAGTTTCTGCAGAATCTTAGCTGTTACTTGATGCTGCTTCTATTCTATCTTGTTCAT 352
Query 343 GGAGGCTGGTCTTGACA-TTT--T---CT-TTAGAT-TTCTAAAAATGTGTTTTAATAAC 394
||||||||||||||||| ||| | | |||| | |||||||||||||||||||||||
Sbjct 353 GGAGGCTGGTCTTGACACTTTCATGAGATATTAG-TATTCTAAAAATGTGTTTTAATAAC 411
Query 395 AACGAAACTGGTGATGAAGTGAAAACCGAGAGGCAAGTGTTTGTTTCATCCGAAGAAGAT 454
| |||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||
Sbjct 412 ATTGAAACTGGTGATGAAGTGGAAACCGAGAGGCAAGTGTTTGGTTCATCTGAAGAAGAT 471
Query 455 GAATTTCGAGTTGAAGATACTCCTGGAGATGATGCCAACAATTTGATACAGATTTCTCAA 514
||||||||||||||||||||| || ||| || ||||||| || ||||||||||||||
Sbjct 472 GAATTTCGAGTTGAAGATACTGCT--AGA-AATACCAACAA--TG-TACAGATTTCTCAA 525
Query 515 CAACAACAGCAACCGCTAGCTCCTGTTGTTAAGTGGGAGAGGTATCTCCCGGTTAGATCG 574
||||| |||||||||||||||| |||||| |||||||||||||||||||| |||||||||
Sbjct 526 CAACAGCAGCAACCGCTAGCTCATGTTGTGAAGTGGGAGAGGTATCTCCCAGTTAGATCG 585
Query 575 CTTAAGGTTCTTCTGGTGGAGAATGATGACTCAACACGCCATATTGTTACTGCCCTTTTG 634
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 586 CTTAAGGTTCTTCTGGTGGAGAATGATGACTCAACACGCCATATTGTTACTGCCCTTTTA 645
Query 635 AAGAATTGCAGCTATGAAGTTACTGCTGTTTCGGATGTCCTTGAAGCCTGGAGAATTCTA 694
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 646 AAGAATTGCAGCTATGAAGTTACTGCTGTTCCGGATGTCCTTGAAGCCTGGAGAATTCTA 705
Query 695 AAAGATGAGAAGAGTTGCATTGATCTTGTATTAACAGAGGTTGTCCTGCCTGTCCATTCT 754
|||||||||| ||||||||||||||||| ||||||||||||| | ||||||| |||||
Sbjct 706 GAAGATGAGAAAAGTTGCATTGATCTTGTCTTAACAGAGGTTGACATGCCTGTGCATTCA 765
Query 755 GGAACTGGTCTGTTGTCCAAGATTATGAGCCATAAGACACTTAAGAACATCCCCGTCATA 814
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 766 GGAACCGGTCTGCTGTCCAAGATTATGAGCCATAAGACACTTAAGAACATCCCCGTCATA 825
Query 815 ATGATGTCATCTCATGATTCCATGGTTCTGGTCTTTAAGTGTTTGTCGAATGGTGCTGTT 874
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 826 ATGATGTCATCACATGATTCTATGGTTCTGGTCTTTAAGTGTTTGTCGAATGGTGCTGTT 885
Query 875 GATTTTCTCGTGAAACCCATTAGAAAGAACGAACTAAAGAATCTTTGGCAGCATGTCTGG 934
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 886 GATTTTCTCGTGAAACCCATTAGAAAGAACGAACTAAAGAATCTTTGGCAACATGTCTGG 945
Query 935 AGAAGATGTCACAGC 949
|||||||||||||||
Sbjct 946 AGAAGATGTCACAGC 960
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97138054575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5