BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496153
Length=979
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60140.1 | Symbols: | AP2/B3-like transcriptional factor fa... 710 0.0
> AT5G60140.1 | Symbols: | AP2/B3-like transcriptional factor
family protein | chr5:24214077-24215453 REVERSE LENGTH=1089
Length=1089
Score = 710 bits (384), Expect = 0.0
Identities = 579/667 (87%), Gaps = 38/667 (6%)
Strand=Plus/Plus
Query 1 ACATCTGGAAAAACTAGGATCTGGAGAAACTGTT-TTCACCTTTTTCTTTCCGATCAAAA 59
||||||||||||||| ||||||||||||||| || ||||||||||| |||||||||||||
Sbjct 1 ACATCTGGAAAAACTTGGATCTGGAGAAACT-TTGTTCACCTTTTTATTTCCGATCAAAA 59
Query 60 TTAGGGTTTCAGAG-AGTTTCTAAGAGCACAAGAAGTTGACGACAATGAAC-C-A-CGGA 115
|||||| ||||||| | |||| ||||||||||||||||||||||||||||| | | |||
Sbjct 60 TTAGGG-TTCAGAGTA-TTTCCAAGAGCACAAGAAGTTGACGACAATGAACACAAGAGGA 117
Query 116 AATTATTCGGATGGTTCTACTTCAAAGTTCTTTAAACCGTACCTTCCTAGTGAATCCGGA 175
||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 AATTACTCTAATGGTTTTACTTCAAAGTTCTTTAAACCGTACCTTCCTAGTGAATCCGGT 177
Query 176 GACGATCTGATGCTACCCATTTATTTCAACAGCTGTTTACCAAAGCCTTTGCCTGAAACT 235
|| |||||| | |||||||||| |||||||||||||||||||||| |||||||| |||||
Sbjct 178 GATGATCTGGTACTACCCATTTCTTTCAACAGCTGTTTACCAAAGTCTTTGCCTAAAACT 237
Query 236 GTAAATGTTAGAAGCATTTATGGAAAGGTTTGGAAATT-GGTGTTGAGGAAATGTGGTGG 294
|||| |||||||||||||| |||||| |||||||||| || ||| | ||||||||||||
Sbjct 238 GTAACTGTTAGAAGCATTTCTGGAAACATTTGGAAATTAGG-GTTTAAGAAATGTGGTGG 296
Query 295 TGAGGTTGAGAGATTTGTTATGGTTAATGGTTGGAAGAAGATTGTAAGGGACGAAGATCT 354
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||
Sbjct 297 TGAGGTTGAGAGATTTGTTATGGTTAGTGGTTGGAAGAAGATTGTAAGGGACGAAAACCT 356
Query 355 GAAAGGTGGAGATCTCTTGGCATTTGAGTTTGATGGGTCTCGTTGTTTCAATTTATGTAT 414
||| ||||||||||||||| |||||||||||||||| |||| || ||| ||||| | |||
Sbjct 357 GAACGGTGGAGATCTCTTGTCATTTGAGTTTGATGGCTCTCATTTTTTTAATTTCTCTAT 416
Query 415 CTACGAGCGTGAGACTATGTGTAAGAAGCTTAAGAGAAGTTCAGAGCAAAGCGAGGAGAT 474
|| || | |||||||| |||||||| ||||||||||||||||||||||||| |||| ||
Sbjct 417 CTTTGACCATGAGACTACGTGTAAGAGGCTTAAGAGAAGTTCAGAGCAAAGCAAGGACAT 476
Query 475 CATCGAAGTGGGATCTGATGGTGAAGAAGAAACTCTAG-CTAGtgatgat-t---c-t-- 526
|||| |||||||||||||| ||||||||||| ||| || ||||||||||| | | |
Sbjct 477 CATCAAAGTGGGATCTGATTGTGAAGAAGAATCTC-AGGCTAGTGATGATGTTATCGTTC 535
Query 527 ------g--a-----c-ga---ttctgataatgattatgctgttgaggatgatgatgttg 569
| | | || |||||||||||||||| |||||||||||||| ||||||
Sbjct 536 TTAATAGTGATGATTCTGACGATTCTGATAATGATTATTCTGTTGAGGATGATAATGTTG 595
Query 570 ctgaagatgatgatggtcttgaggatgaag-atgaagttgaggctgaggatgatgatgat 628
|||| ||||||||||||||||||||||||| | || |||||||||||||||| | |||||
Sbjct 596 CTGAGGATGATGATGGTCTTGAGGATGAAGTA-GATGTTGAGGCTGAGGATGGTTATGAT 654
Query 629 gttaagg 635
| |||||
Sbjct 655 GCTAAGG 661
Score = 520 bits (281), Expect = 1e-146
Identities = 397/451 (88%), Gaps = 16/451 (4%)
Strand=Plus/Plus
Query 540 atgattatgctgttgaggatga-tgatgttgc-tgaagatgatgatggtcttgaggatga 597
||| ||||| || | ||||| | ||||| | | ||| ||||| |||| | ||||| |||
Sbjct 644 ATGGTTATGATGCTAAGGAT-AGTGATGGT-CTTGAGGATGAAGATGATGATGAGGCTGA 701
Query 598 agatgaag-t-tgaggctgaggatgatgatgatgttaaggctgaagatga-c--gatgat 652
|||| | | ||| ||| |||||||||||| | || ||| ||||||||| | || |||
Sbjct 702 GGATG--GTTATGATGCTAAGGATGATGATGGTCTTGAGGATGAAGATGATCTTGAGGAT 759
Query 653 -a--atgaCGAAAGACAGTATCTGGATCATCACAACAACCCGTACTTTACTATGACACTC 709
| |||||||||| | |||||||||| ||||| | ||||||||||||||||||||||||
Sbjct 760 GAGGATGACGAAAGGCGGTATCTGGATGATCACGAGAACCCGTACTTTACTATGACACTC 819
Query 710 AATCCGAAGAAGAAAAGCCAATTGCACATACCGGCTTATGTCATAAAGGACTATGACTTA 769
|||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 820 AATCCGAAGAAGAAGAGCCAATTGCACATACCGGCTCATGTCATAAGGGACTATGACTTA 879
Query 770 AACTTCCCGGCA-CGTATAACAGTCATGGACCAATTGGGAGCATTGGAGAAAGCAATCAA 828
| |||||||| | |||||||||||| ||||| || |||||||||||||||||||||||||
Sbjct 880 ACCTTCCCGG-AGCGTATAACAGTCGTGGACGAAATGGGAGCATTGGAGAAAGCAATCAA 938
Query 829 GATTCAAAAGAATGGCTCCATCTTTGTCAAGGGATTTGGTAGTGTCATCAGAAGGAACAA 888
||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 939 GATTCAAAAGAATGGTTGCATCTTTGTCAAGGGATTTGGTAGTTTCATCAGAAGGAACAA 998
Query 889 AATGAAGATGACTGATAAAATGATATGCGAGCTTAAGAGGACTGGAAGTAATCTGGTTCA 948
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 999 AATGAAGATGACTGACAAAATGATATGCGAGCTTAAGAGGACTGGAGGTAATCTGGTTCA 1058
Query 949 CACCATCAAAGTCAACATTATCAGCGGATGA 979
||||||||| ||||| |||||||||||||||
Sbjct 1059 CACCATCAAGGTCAAGATTATCAGCGGATGA 1089
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47923376238
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5