BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496158
Length=1245
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60200.1 | Symbols: TMO6 | TARGET OF MONOPTEROS 6 | chr5:242... 1474 0.0
AT2G28510.1 | Symbols: | Dof-type zinc finger DNA-binding fami... 141 2e-32
AT2G46590.2 | Symbols: DAG2 | Dof-type zinc finger DNA-binding ... 121 2e-26
> AT5G60200.1 | Symbols: TMO6 | TARGET OF MONOPTEROS 6 | chr5:24240975-24242523
FORWARD LENGTH=1449
Length=1449
Score = 1474 bits (798), Expect = 0.0
Identities = 998/1089 (92%), Gaps = 36/1089 (3%)
Strand=Plus/Plus
Query 4 ATAATCTTCAAGCAGCTTCTCAGATTCAGCTCCTATGGATCATTTGTTACAGCAACAGGA 63
||| |||||||||| ||||||||||||||||| |||||||||||||||||| || |||||
Sbjct 70 ATAGTCTTCAAGCAACTTCTCAGATTCAGCTCTTATGGATCATTTGTTACAACACCAGGA 129
Query 64 TGTTTTTGGAAATTATAACAAAGCAAGAGAAGCCATGGGACTATCATATCCATCAAACCC 123
||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 130 TGTTTTTGGGAATTATAACAAAGCAAGAGAAGCAATGGGACTATCATATTCATCAAACCC 189
Query 124 AACACAGTTAGATAACGATCAGAAGAAACCTTCTCCGGCGACTGCAGCGGCGGCGACAAG 183
||||| |||||||||||| ||||||||||||||| | ||||| |||| | ||||||
Sbjct 190 AACACCGTTAGATAACGACCAGAAGAAACCTTCT----C--CTGCAACGGCTGTGACAAG 243
Query 184 GCCACAGCCACCGGAGCTAGCTCTGAGATGTCCACGTTGCGACTCAACAAACACAAAGTT 243
||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 244 GCCACAGCCTCCGGAGCTAGCTCTCAGGTGTCCACGTTGCGACTCAACAAACACAAAGTT 303
Query 244 TTGTTACTACAACAACTACAGTCTCACTCAGCCTCGGTACTTCTGCAAATCATGCCGGAG 303
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 304 TTGTTACTACAACAACTACAGTCTCACTCAGCCTCGCTACTTCTGCAAATCATGCCGGAG 363
Query 304 ATATTGGACCAAAGGTGGAACCCTAAGGAATATCCCCGTCGGTGGAGGCTGCCGGAAAAA 363
||||||||| ||||||||||| |||||||| |||||||| ||||||||||||||||||||
Sbjct 364 ATATTGGACTAAAGGTGGAACTCTAAGGAACATCCCCGTGGGTGGAGGCTGCCGGAAAAA 423
Query 364 CAAACGGTCCACATCTTCAG-TGACAAGAAGCCTCAGAACCACACCAGAACCGGCGTCCC 422
|||||| ||||||||||| | || ||||||||||||||||||| ||||||||||||||||
Sbjct 424 CAAACGATCCACATCTTCGGCTG-CAAGAAGCCTCAGAACCACTCCAGAACCGGCGTCCC 482
Query 423 ACGACGGGAAAGCCTTCTCGGCGGCGAG-TTTTAATGGGTATAATAACAATGAACATATT 481
|||||||||||| |||||||||||| || |||||||||||||| ||||||||||||||||
Sbjct 483 ACGACGGGAAAGTCTTCTCGGCGGC-AGGTTTTAATGGGTATAGTAACAATGAACATATT 541
Query 482 GATCTGAGCTTAGCCTTTGCCTTGCTGAACAAACAACATCCGGGGAGTTCTTCACAGCTA 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 GATCTGAGCTTAGCCTTTGCCTTGCTGAACAAACAACATCCGGGGAGTTCTTCACAGCTA 601
Query 542 GGGTTTCATTCGGAATTCGGTAACTCTCATCAGTCTGATATGGAGGGTGTGTTTGGAACA 601
||||||||||| ||| |||||| ||||||||||||||| ||||| ||| ||||||| |||
Sbjct 602 GGGTTTCATTCAGAACTCGGTAGCTCTCATCAGTCTGACATGGAAGGTATGTTTGGGACA 661
Query 602 AGCCAACAGAAAGAGAACGCTACTTATGCGTTTGGAAACGGGAGCAGCGGTTTGGGTGAT 661
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 662 AGCCAACAAAAAGAGAACGCTACTTATGCGTTTGGTAACGGGAGCAGCGGTTTGGGTGAT 721
Query 662 CCAAGCAGGGTCTTGTGGGGATTCCCATGGCAGATGAACGGAGAGAGCTTTGGGATGATG 721
|||||||| ||||| |||||||| |||||||||||||| |||||||||||||| ||||||
Sbjct 722 CCAAGCAGAGTCTTATGGGGATTTCCATGGCAGATGAATGGAGAGAGCTTTGGAATGATG 781
Query 722 AACATAGGAGGGGGTGGTGGTCATGTAGATCAGATCGATTCAGGGAGAGAGATTTGGACC 781
||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 782 AACATAGGAGGAGGTGGTGGTCATGTAGATCAGATTGATTCAGGGAGAGAGATGTGGACC 841
Query 782 AATATGAACTATATCAATTCTGGTGCTTTAATGTAGTTCAAATTAATTAAAACCCCAATA 841
||||||||||| || ||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 842 AATATGAACTACATTAATTCTGGTGCTTTAATGTAGTTCAAA--A-TTAAAACCCCAATA 898
Query 842 TTATTTGGGTTTTGATTTAGGGTTTGAATTTCATGTTTTTTATTGGGAGAA-AAAAGGG- 899
|||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||
Sbjct 899 TTATTTGGGTTTTGATTTAGGGTTTGAATTTCATGTTTTTTAATGGGAGTAGAAAAGGGT 958
Query 900 G-TAGCTATTTTATGAAATGGTTAAG----TATAGATATATTAGGGCTTCTTCAAATTAA 954
| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 959 GGTAGCTATTTTATGAAATGGTTAAGGAAGTATAGATATATTAGGGCTTCTTCAAA---- 1014
Query 955 AGAGTTTCAAACTTGCAAAATGAGGTTGGGGTAGTTTTTGTTTTGG-TTTCCGAT-T--- 1009
||||||||||||||||||||| ||||||||||||| ||||||| | |||| ||| |
Sbjct 1015 -GAGTTTCAAACTTGCAAAATGGGGTTGGGGTAGTTCTTGTTTTCGATTTCTGATCTAAA 1073
Query 1010 --G---ACTTTCTTTATTTGTATGTTCACTATGTTTTTAATGAAACATTTCCTTTCTTGT 1064
| | |||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1074 TTGTTGAGTTTCTTTATTTGTATGTTCACTATGTTTA-AATGAAACATTTCCTTTGTTGT 1132
Query 1065 TCTAAATTC 1073
||||| |||
Sbjct 1133 TCTAATTTC 1141
Score = 237 bits (128), Expect = 2e-61
Identities = 149/159 (94%), Gaps = 1/159 (1%)
Strand=Plus/Plus
Query 1088 AACCCTAATTTCAACTATTGAAACCTAATCATTAATTCTCCTATAAAAATCTGACATCTA 1147
||||||||| || | |||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 1286 AACCCTAATCTCTCCCATTGAAACCTAATCATTATTTCTCCTATAAAAATCTGACATATA 1345
Query 1148 GAGGC-TCTTAATGGCTCGGTCAATAGGGTTGATGTTTCTACTTAATTGATTTAGTGACG 1206
||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 1346 GAGGCTTCTTAATGGCTCGGTTAATAAGGTTGATGTTTCTACTTAATTGATTTAGTGACG 1405
Query 1207 TAAAGGATCAATCTTGGTAATGTTATATAATGTCAAATA 1245
|||||||||||||||||||||| ||||||||||||||||
Sbjct 1406 TAAAGGATCAATCTTGGTAATGGTATATAATGTCAAATA 1444
> AT2G28510.1 | Symbols: | Dof-type zinc finger DNA-binding family
protein | chr2:12199098-12200765 REVERSE LENGTH=1290
Length=1290
Score = 141 bits (76), Expect = 2e-32
Identities = 140/172 (81%), Gaps = 0/172 (0%)
Strand=Plus/Plus
Query 212 TGTCCACGTTGCGACTCAACAAACACAAAGTTTTGTTACTACAACAACTACAGTCTCACT 271
|||||| | || || || ||||||||||||||||||||||||||||||| |||||| |
Sbjct 286 TGTCCAAGATGTGAATCTCCAAACACAAAGTTTTGTTACTACAACAACTATAGTCTCTCA 345
Query 272 CAGCCTCGGTACTTCTGCAAATCATGCCGGAGATATTGGACCAAAGGTGGAACCCTAAGG 331
|| ||||| |||||||||||||| || |||||||||||||| ||||| || || || |
Sbjct 346 CAACCTCGTTACTTCTGCAAATCTTGTCGGAGATATTGGACTAAAGGCGGTACTCTTCGT 405
Query 332 AATATCCCCGTCGGTGGAGGCTGCCGGAAAAACAAACGGTCCACATCTTCAG 383
|| | ||||||||||| || ||||| ||||||||| ||| | || ||||
Sbjct 406 AACGTTCCCGTCGGTGGTGGTTGCCGTCGAAACAAACGATCCTCTTCCTCAG 457
> AT2G46590.2 | Symbols: DAG2 | Dof-type zinc finger DNA-binding
family protein | chr2:19133040-19134905 FORWARD LENGTH=1236
Length=1236
Score = 121 bits (65), Expect = 2e-26
Identities = 126/156 (81%), Gaps = 2/156 (1%)
Strand=Plus/Plus
Query 212 TGTCCACGTTGCGACTCAACAAACACAAAGTTTTGTTACTACAACAACTACAGTCTCACT 271
|||||| | ||| ||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 370 TGTCCAAGATGCAACTCAACCAACACAAAGTTTTGTTACTACAACAACTATAGTCTCACA 429
Query 272 CAGCCTCGGTACTTCTGCAAATCATGCCGGAGATATTGGACCAAAGGTGGAACCCTAAGG 331
|| || | |||||||||||| || || || ||||||||| |||||||| | || |||
Sbjct 430 CAACCAAGATACTTCTGCAAAGGTTGTCGAAGGTATTGGACCGAAGGTGGATCTCTTAGG 489
Query 332 AATATCCCCGTCGGTGGAGGCTGCCGGAAA-AACAA 366
||| | || || || ||| ||| | |||| |||||
Sbjct 490 AATGTTCCTGTGGGAGGAAGCT-CAAGAAAGAACAA 524
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61194464355
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5