BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496159
Length=1964
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60210.1 | Symbols: RIP5 | ROP interactive partner 5 | chr5:... 2852 0.0
> AT5G60210.1 | Symbols: RIP5 | ROP interactive partner 5 | chr5:24243083-24245968
REVERSE LENGTH=2130
Length=2130
Score = 2852 bits (1544), Expect = 0.0
Identities = 1822/1948 (94%), Gaps = 51/1948 (3%)
Strand=Plus/Plus
Query 1 AATGGATCTCCAGATGTTCCTAAGAAGGTGTCTCCTCGAGCTGCTCGGCCACTGAAGATC 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 101 AATGGATCTCCGGATGTTCCTAAGAAGGTGTCTCCTCGAGCTGCTCGGCCACTGAAGATC 160
Query 61 GCAGCGCTAGAGCCTGAATCCTCGTCATCTCCTGTCTCAGCCACTATCAGAACACCAAAG 120
|||||||||||||||||||| || ||||||||| ||||||| |||| |||||||||||||
Sbjct 161 GCAGCGCTAGAGCCTGAATCTTCTTCATCTCCTATCTCAGCTACTAACAGAACACCAAAG 220
Query 121 GATAAAAGTTCAAAAGTTCTAGATCGTAGGTCTCCACGAAGCCCTGTCTCTGAGAAGAAG 180
||||| ||| |||| |||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 221 GATAAGAGTCCAAACGTTCTAAATCGTAGGTCTCCTCGAAGCCCTGTCTCTGAGAAGAAG 280
Query 181 AGACCAAGTAGAATAACGGAGCTGGAGTTGCTAGTCTCGCAGCTTCAGGAGGAGCTGAAA 240
|| || ||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 281 AGGCCGAGTAGAATAACGGAGCTAGAGTTGCTAGTCTCGCAGCTTCAGGAGGAGCTAAAA 340
Query 241 AGGGCAAAAGATCAAATCTCAGTGTCTGAAACGTCAAAGAAGCAAGCAGAGCAAGAGGCA 300
| ||| |||||||||||||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct 341 AAGGCGAAAGATCAAATCTCAGTGTCTGAAACATCAAAGAAGCAAGCAGAACAAGAAGCA 400
Query 301 GAGGAGTCCAGGAAACAGCTGCAAGAAGTTTCCTCTAAGCTTGAGGAGAACCAGAATCAG 360
|||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||
Sbjct 401 GAGGAGTCCAGGAAACAGCTCCAAGAAGTTTCTTCTAAGCTTGAGGAGAGCCAGAATCAG 460
Query 361 TTTTTGGAAATTTCAGCCTTGGGAGAAGAAACCGATAAAACCGGTTCTCTTGTTCATCAA 420
||| |||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 461 TTTGTGGAAACTTCAGCCTTGGAAGAAGAAACCGATAAAACCGGTTCTCTTGTTTTTCAA 520
Query 421 GGTGTATCTCAGGA--GTG--T--GA--TT--T--TACTGCTGGTGAAAGAGCAGGATTG 468
||||||||||||| ||| | || || | ||||||||||||||||||||||||
Sbjct 521 AGTGTATCTCAGGAGTGTGATTGGGAGTTTAGTGCTACTGCTGGTGAAAGAGCAGGATTA 580
Query 469 GCTGCTGTTGCTCATGAGATTCGACAACTCAAGCTTCAGATTGAGATGGTGGCTTCTTCC 528
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 581 GCTGCTGTTGCTCATGAGATCCGACAACTCAAGCTTCAGATTGAGATGGTGGCTTCTTCT 640
Query 529 GAAGCTGGTCATGTGAAACAGGCTGAGTTGCATAACTCGGAGGTTCAACTTTTGAGAGGA 588
|||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||
Sbjct 641 GAAGCTGGTCATGTGAAACAAGCTGAGTTGTATAACTCAGAGGTTCAACTTTTGAGAGGA 700
Query 589 AACTTAATGGACACGCTTTTCCATGTCGAGAATTTCAGGAACCAACTCAAGGACTGTGAG 648
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 701 AACTTAATGGACACGCTTTTCCACGTCGAGAATTTCAGGAACCAACTTAAGGACTGTGAG 760
Query 649 GTATCAGAAGCTGAAACCGAGGCTTTAGCCACTGAAACTCTTAGGCAATTGGAGAATGCG 708
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 761 ATATCAGAAGCTGAAACCGAGGCTTTAGCCACTGAAACTCTTAGGCAATTGGAGAATGCG 820
Query 709 AGAAAGGCAGTAGAAGAACTGAAGTCAGATGGCACAAAAGCAGTTGAGAGTTACAAGAAG 768
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 821 AAAAAGGCAGTAGAAGAACTGAAGTCAGATGGCACAAAAGCTGTTGAGAGTTACAAGAAG 880
Query 769 ATGGCTGTGGAGCTTGAACAGTCAAAATCAAGAATGGTATGGCTTGAAGCTCTTGTGAAT 828
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 881 ATGGCTGTGGAGCTTGAACAGTCAAAATCAAGGATGGTATGGCTTGAAGCTCTTGTGAAT 940
Query 829 AAACTTCAGACCAATCCAGCAGATTTGGAAAACCATGAAATCCTACTTAAAGACTATGAA 888
|||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 941 AAACTTCAGAACAATCCAGCAGATTTGGAAAACCACGAAATCCTGCTTAAAGACTATGAA 1000
Query 889 AGTTTGAAACGTGGGGAATCAAATGAGATGGATGAAGAAGTATCTTCCTTAAGATGTGAG 948
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1001 AGTTTGAGACGTGGGGAATCAAATGAGATGGATGAAGAAGTATCTTCCTTAAGATGTGAG 1060
Query 949 GTAGAGCGACTGAGAGCGGCTCTAGAAGCTTGTGATAAAAAAGACCAAGAGGGTAACGTA 1008
||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||| |||
Sbjct 1061 GTAGAGCGACTGAGAGCAGCTCTAGAAGCTTCTGATAAAAAAGACCAAGAAGGTAATGTA 1120
Query 1009 GAGGCTTCTTCTCGGTTACGGATACAAGCTGAACTCCAGTCTGAATTAAAGATTGCTAAA 1068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1121 GAGGCTTCTTCTCGGTTACGGATACAAGCTGAACTCCAGTCTGAATTAAAGATTGCTAAA 1180
Query 1069 TCCGAGATAGACGAGCTAAAGGCGAGGTTGATGGACAAGGAAACAGAATTACAGTTTATT 1128
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1181 TCTGAGATAGACGAGCTAAAGGCGAGGTTGATGGACAAAGAAACAGAATTACAGTTTATT 1240
Query 1129 TCAGAGGAGAGAGATAAC-TTATGCCTGAAACTGATGAAGGATCAGAAAGAAATAGATGT 1187
|||||||| ||||||||| ||| || |||||||||||||| | |||||||||||||||||
Sbjct 1241 TCAGAGGAAAGAGATAACTTTA-GCATGAAACTGATGAAGAACCAGAAAGAAATAGATGT 1299
Query 1188 TGAAGCTGAGCTGAAGAAACTAAGGGAGGCGATCGAGAATTTAAAGGCGGATTTGATGGA 1247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1300 TGAAGCTGAGCTGAAGAAACTAAGGGAGGCGATCGAGAATTTAAAGGCGGATTTGATGGA 1359
Query 1248 TAAAGAGACAGAACTACAGATCGTTTCAGATGAGAACGAGACATTGAAGTCAGATATCCA 1307
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1360 TAAAGAAACAGAACTCCAGATCGTTTCAGATGAGAACGAGACATTGAAGTCAGATATCCA 1419
Query 1308 CAAGAGGGAGGCAGATGTACAAGACGCGTTCATGAAGCTAGGGATTGCAATGGAAGAGGC 1367
|||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1420 CAAGAGCGAGACAGATGTACAAGACGCGTTCCTGAAGCTAGGGATTGCAATGGAAGAGGC 1479
Query 1368 TGACAAGAGTAGCAAGAAAGCGGTTAGAGTCACCGAGCAACTAGAGGCTACTCAAGCTTC 1427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1480 TGACAAGAGTAGCAAGAAAGCGGTTAGAGTCACCGAGCAACTAGAGGCTACTCAAGCTTC 1539
Query 1428 AAACTCAGAAATGGAAACAGAACTCAGGAAGCTCAAAGTTCAATCAAACCAGTGGAGAAA 1487
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1540 AAACTCAGAAATGGAAACAGAACTCAGGAAGCTCAAAGTTCAATCAAACCAATGGAGAAA 1599
Query 1488 AGCTGCTGAAGCAGCTACTGCCATGCTCTCTGCTGGAAACAACGGGAAATTCACTGAGAA 1547
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1600 AGCTGCTGAAGCAGCTACTGCCATGCTCTCTGCTGGAAACAACGGGAAATTCGCTGAGAA 1659
Query 1548 CTATAATCAAACAAACTCTCCTTACTCTGAGGATATCGACGATGAGCTGACAAAGAAGAA 1607
|||||||||||| ||||| || ||||||||||||||||| ||||| ||||||||||||||
Sbjct 1660 CTATAATCAAACGAACTCCCCGTACTCTGAGGATATCGATGATGAACTGACAAAGAAGAA 1719
Query 1608 AAATGGGAATGTGCTCAAGAAGATTGGAGTTTTGTGGAAGAAGCCTCAGAAATAGTTGGA 1667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1720 AAATGGGAATGTGCTCAAGAAGATTGGAGTTTTGTGGAAGAAGCCTCAGAAATAGTTGGA 1779
Query 1668 GAATAACT-AATATAATTAGGTACCGTCGATTTGGAGTTGGATTATAAGAGCAACTCAAG 1726
|||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||| |
Sbjct 1780 GAATAACTTAATATAATTAGGTATCGTCGACTTGGAGTTGGATTATAAGAGCAACTCATG 1839
Query 1727 TGACTT-GAGTA---ATGTGAATTAGTAGTTTGAGAACAATGTTCTGGAAAATACATGTT 1782
|||||| | ||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1840 TGACTTCG-GTATCGATGTGAATTAGTAGTTTGAGAACAATGTTGTGGAAAATACATGTT 1898
Query 1783 CTAAAGATTTTTAGCTGTGGTAATTTT------GT-----A--T-T---CAGGAGGGAGA 1825
| ||||||||||||||||||||||||| || | | | | ||||||| |
Sbjct 1899 CCAAAGATTTTTAGCTGTGGTAATTTTACTTTTGTTGTTTAAGTGTATTCTGGAGGGAAA 1958
Query 1826 CTACTAAATCT-TGCATT-CTGGAACCAGTTAGTGCTTTGTTAACAACTTAACATCATTC 1883
||||||||||| | |||| | |||||||||||| |||| ||||||| | ||| | |
Sbjct 1959 CTACTAAATCTGT-CATTAC-GGAACCAGTTAG-GCTT-GTTAACA--T---CAT--T-C 2006
Query 1884 AAAGGCACGAAAGCCTCTGGTGAATTTT 1911
||||||||||||||||||||| ||||||
Sbjct 2007 AAAGGCACGAAAGCCTCTGGTTAATTTT 2034
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97288656210
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5