BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496170
Length=427
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60330.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 425 1e-118
AT3G45320.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 75.0 5e-13
> AT5G60330.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G45320.1); Has
1807 Blast hits to 1807 proteins in 277 species: Archae -
0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses
- 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:24273128-24273634
REVERSE LENGTH=507
Length=507
Score = 425 bits (230), Expect = 1e-118
Identities = 288/313 (92%), Gaps = 15/313 (5%)
Strand=Plus/Plus
Query 115 ACCAAAGGTTACAACCTCATGTGGATTGTTCAGTCACCAAAATCCAAAGAGAAAGAGAAA 174
||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
Sbjct 208 ACCAAAGGTTACAACTTCATGTGGATTGTTCAGTCACCAAAATCC------AAAGAG--A 259
Query 175 GAGAATCATCACACGAATGTCGCAACTACTACACCTACTACCACTACTTCTTGTTGTTCA 234
| ||||||||||||||||||| | || | | ||||||||||| |||||| |||||||
Sbjct 260 -ATCATCATCACACGAATGTCGC-A--AC-A-A-CTACTACCACTGCTTCTTCTTGTTCA 312
Query 235 TCTCCTCTTTCGTCTCTCCAGGTTCTGAAGAAAGGTGATGTGGATGAGTACGAGATTAGG 294
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 313 TCTCCTCTTTCGTCTCTCCAGGTTCTGAAGAAAGGTGATGTAGATGAGTACGAGATTAGG 372
Query 295 ATTGTGATTGGTGCTGATGGTCCTAGAAGTCCAAAGGATGGATCTTCTGCAACGCCTTTG 354
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 373 ATTGTGATTGGTGCTGATGGTCCTAAAAGTCCAAAGGATGGATCTTCTGCAAAGCCTTTG 432
Query 355 GGGATGCTCAAGGAGATTGAACAAGGAAGAAATAACACCAAACTTCTCACTAATGGATCA 414
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 433 GAGATGCTCAAGGAGATTGAACAAGGAAGAAATAACACCAAACTTCTCACTAATGGATCA 492
Query 415 CATGTTGCTGCTT 427
| |||||||||||
Sbjct 493 CCTGTTGCTGCTT 505
> AT3G45320.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G60330.1);
Has 7 Blast hits to 7 proteins in 2 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). | chr3:16631646-16632146
FORWARD LENGTH=501
Length=501
Score = 75.0 bits (40), Expect = 5e-13
Identities = 43/44 (98%), Gaps = 1/44 (2%)
Strand=Plus/Plus
Query 115 ACCAAAGGTTACAACCTCATGTGGATTGTTCAGTCACCAA-AAT 157
|||||||||||||||||||||||||||||||||||||||| |||
Sbjct 229 ACCAAAGGTTACAACCTCATGTGGATTGTTCAGTCACCAACAAT 272
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20257902847
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5