BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496171
Length=1041
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60335.1 | Symbols: | Thioesterase superfamily protein | ch... 782 0.0
AT5G60340.1 | Symbols: | P-loop containing nucleoside triphosp... 472 4e-132
> AT5G60335.1 | Symbols: | Thioesterase superfamily protein |
chr5:24273879-24274551 REVERSE LENGTH=501
Length=501
Score = 782 bits (423), Expect = 0.0
Identities = 455/471 (97%), Gaps = 0/471 (0%)
Strand=Plus/Plus
Query 555 GACAGTTTTCCCTACAGGTCTCCTTGTTTTGAGGAGCTTCTCATCAGTTGCTTCAAAGAC 614
|||||||||||||| |||||||||||||||||| || |||||||||||||||||||||||
Sbjct 12 GACAGTTTTCCCTAGAGGTCTCCTTGTTTTGAGAAGTTTCTCATCAGTTGCTTCAAAGAC 71
Query 615 ACTACTTAAAGTGGGAGATGTTTTAAGAGAAACAAGAGTGTTCTCAAGTGAAGATGTTAA 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 72 ACTACTTAAAGTGGGAGATGTTTTAAGAGAAACAAGAGTGTTCTCAAGTGAAGATATTAA 131
Query 675 GGCCTATGCTGAGGTGAGCCATGATTGGAACCCACTCCATTTCGATCCAGAATCTGCTCG 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 132 GGCCTATGCTGAGGTGAGCCATGATTGGAACCCACTCCATTTCGATCCAGAATCTGCTCG 191
Query 735 TAAAGCCGGATTTGAGAATCGCCTTGTCCACGGCATGCTTGTTTCTTCCATGTTTCCTCG 794
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 192 TAAAGCCGGATTTGAGAATCGCCTTGTCCACGGGATGCTTGTTTCTTCCATGTTTCCTCG 251
Query 795 TATCATCTCTGCCCAATTCCCTGGAGCAGTATATGTATCTCAAAGTCTGCATTTTCGGTC 854
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 252 TATCATCTCTGCCCATTTCCCTGGAGCAGTATACGTATCTCAAAGTCTGCATTTTCGGTC 311
Query 855 ACCGGTTTACGTAGGTGATGAAATTCTCGGACTAGTTCAAGCAATAGCTTTAAGAGAAAC 914
|||||||||| |||||||||||||||| ||| | |||||||| |||||||||||||||||
Sbjct 312 ACCGGTTTACATAGGTGATGAAATTCTTGGATTGGTTCAAGCCATAGCTTTAAGAGAAAC 371
Query 915 CAAGAATAAGTACATTGTCAAATTCTCAACTAAATGCCTCGAGAACCACAACGAACTTGT 974
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 372 CAAGAATAAGTACATTGTCAAATTCTCAACTAAATGCTTCAAGAACCACAACGAACTTGT 431
Query 975 TGTTATTGATGGTGAAGCTACTGCAGTTTTACCAAACCTTGAGATGTTGCA 1025
||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 432 TGTTATTGATGGTGAAGCTACTGCAATTTTACCAAACCTTGACATGTTGCA 482
> AT5G60340.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr5:24274962-24276055
REVERSE LENGTH=837
Length=837
Score = 472 bits (255), Expect = 4e-132
Identities = 425/500 (85%), Gaps = 40/500 (8%)
Strand=Plus/Plus
Query 1 ATGGCGAGAGGTAACAAT--GG-CACAACGCGTCCAAA-GCCAAACCTATTGATCACGGG 56
||||||||| ||||| | || |||| ||| | ||| ||| |||||| ||||||||||
Sbjct 165 ATGGCGAGACGTAACCGTGGGGTGACAAGGCG-CGAAAGGCCGAACCTACTGATCACGGG 223
Query 57 GACTCCCGGTACCGGTAAATCGACGACGGCTTCTGCTCTGGCCGAAGCCACGAATCTCCG 116
|||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 224 GACTCCTGGTACCGGCAAATCGACGACGGCTTCTGCTCTAGCCGAAGCCACGAATCTCCG 283
Query 117 GTATATTTGTGTCGGTGATCTGGTCAAAGAGAAA-AACTTGC-ACGATGGCTGGGACAAT 174
||||||||| |||| |||||||||||||||||| || || | || ||||||||||||||
Sbjct 284 GTATATTTGCATCGGAGATCTGGTCAAAGAGAAAGAA-TT-CTACCATGGCTGGGACAAT 341
Query 175 CAGTTCGAGTGTCACATCATCAACGAAGACTTGGTG-TGTGATGAGCTTGAAGATGTTAT 233
|| ||||||||||| ||||||||||||||| |||| | |||||||||||| |||| |||
Sbjct 342 GAGCTCGAGTGTCACTTCATCAACGAAGACTCGGTGAT-TGATGAGCTTGACGATGCTAT 400
Query 234 GGTAGAAGGAGGAAACATTGTGGACTACCATGGCTGTGACTTCTTTCCTCAGCGATGGTT 293
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 401 GATAGAAGGAGGGAACATTGTGGACTACCATGGCTGTGACTTCTTTCCTCAGCGATGGTT 460
Query 294 TGATCGCGTTGTGGTGCTTCGAACCGAGAACTCCATTTTTTGTTTTGTAACTTTAGCAGG 353
|||||||||||| ||||||||||||||||||||| |||||||| | | |
Sbjct 461 TGATCGCGTTGTCGTGCTTCGAACCGAGAACTCC-------GTTTTGTA--TG-A-C--- 506
Query 354 TTCTGATTGTGTTCTCAACCAA-AGCAGGGGTTATTCGGGAACCAAGCTTAGTAACAACC 412
| | || | ||| || || ||| |||||| ||||||||||||||||||||||
Sbjct 507 --C-G-TT-T------AACGAATAG--GGG-TTATTCAGGAACCAAGCTTAGTAACAACC 552
Query 413 TTGAATGTGAATTGTATCAAATCCTACTCGAAGAAGCATGTGACAGTTATGAAGAGGAAA 472
|| |||| ||| |||||||| ||||||||||||||||| |||||||||||| |||||||
Sbjct 553 TTCAATGCGAAATGTATCAAGTCCTACTCGAAGAAGCACATGACAGTTATGATGAGGAAA 612
Query 473 TTGTCACTGCACTACAAAGT 492
||||||||| ||||||||||
Sbjct 613 TTGTCACTGAACTACAAAGT 632
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51037893352
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5