BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496172
Length=1426
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60360.3 | Symbols: AALP, ALP | aleurain-like protease | chr... 2080 0.0
> AT5G60360.3 | Symbols: AALP, ALP | aleurain-like protease | chr5:24279897-24282368
FORWARD LENGTH=1444
Length=1444
Score = 2080 bits (1126), Expect = 0.0
Identities = 1349/1452 (93%), Gaps = 34/1452 (2%)
Strand=Plus/Plus
Query 1 GATAACGTTCCCGTCTGTAtctctctcttccgtcttctactcttcttcttcttcttcttc 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GATAACGTTTCCGTCTGTATCTCTCTCTTCCGTCTTCTACTCTTCTTCTTCTTCTTCTTC 60
Query 61 tt--A---AC-A-C--T-GAAGC--AGATA-T-AAG-A-AC--T---G-AGAG-AAACAA 97
|| | || | | | | ||| | | | | ||| | || | | ||| ||| ||
Sbjct 61 TTCCACTCACAATCTATCG-AGCTAAAACACTGAAGCAGACATTAGCGTTGAGAAAAAAA 119
Query 98 ACTAAGTAAGAACGCGAGAGAGAAAACCATGTCTGCCAAAACAATCCTATCATCACTAGT 157
| ||||||||||| |||||||||| |||||||||| |||||||||||||||||| ||||
Sbjct 120 AAAAAGTAAGAACGAGAGAGAGAAAGCCATGTCTGCGAAAACAATCCTATCATCAGTAGT 179
Query 158 TCTGGTCATTCTCATCGCCGCATCAGCAGCGGCGGATATCGGATTCGATGAGTCAAACCC 217
| |||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 180 TTTGGTGGTTCTCGTCGCCGCATCAGCAGCGGCTAATATCGGATTCGATGAGTCAAACCC 239
Query 218 GATCCGAATGGTTTCCGATGGCCTTCGGGAGGTAGAAGAAACTGTTTCCCAGATCTTAGG 277
|||||||||||| |||||||| || ||||||||||||||| |||||||||||||||||||
Sbjct 240 GATCCGAATGGTCTCCGATGGTCTCCGGGAGGTAGAAGAATCTGTTTCCCAGATCTTAGG 299
Query 278 TCAATCTCGCCACGTTCTCTCCTTCGCTCGCTTCACTCACCGGTATGGGAAAAAGTATCA 337
||||||||| ||||||||||| |||||||||||||||||||| ||||| |||||||||||
Sbjct 300 TCAATCTCGTCACGTTCTCTCTTTCGCTCGCTTCACTCACCGATATGGTAAAAAGTATCA 359
Query 338 GAACGTGGAGGAGATGAAGCTTCGATTCTCGATTTTCAAAGAGAATCTGGATTTGATCAG 397
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 360 GAACGTGGAGGAGATGAAGCTTCGATTCTCGATTTTCAAGGAGAATCTTGATTTGATCAG 419
Query 398 ATCCACTAACAAGAAAGGCTTATCTTACAAACTCGGTGTTAATCAATTTGCTGATTTGAC 457
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 ATCCACCAACAAGAAAGGCTTATCTTACAAACTCGGTGTTAATCAATTTGCTGATTTGAC 479
Query 458 CTGGCAAGAGTTCCAAAGGACCAAGCTTGGTGCTGCTCAAAACTGCTCTGCCACGTTAAA 517
||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 480 ATGGCAAGAGTTTCAAAGGACCAAGCTTGGTGCTGCTCAGAACTGCTCTGCCACTTTAAA 539
Query 518 GGGCAGCCACAAACTCACAGAAGCAGCTCTTCCGGAAACGAAAGACTGGAGAGAAGATGG 577
|||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 540 GGGCAGCCACAAGGTCACAGAAGCAGCTCTTCCTGAAACAAAAGACTGGAGAGAAGATGG 599
Query 578 TATCGTTAGTCCGGTCAAAGATCAGGGAGGTTGTGGATCTTGCTGGACATTCAGCACAAC 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TATCGTTAGTCCGGTCAAAGATCAGGGAGGTTGTGGATCTTGCTGGACATTCAGCACAAC 659
Query 638 TGGAGCTCTTGAGGCAGCTTACCATCAGGCATTTGGAAAAGGAATATCTCTCTCTGAGCA 697
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 660 TGGAGCTCTTGAGGCAGCTTACCATCAGGCATTTGGAAAAGGAATTTCTCTCTCTGAGCA 719
Query 698 ACAGCTCGTGGACTGTGCTGGAGCTTAT-AATAACTATGGCTGCAATGGTGGCCTTCCTT 756
|||||| ||||| ||||||||||||| | ||||||||||| |||||||||||||||||||
Sbjct 720 ACAGCTTGTGGATTGTGCTGGAGCTT-TCAATAACTATGGTTGCAATGGTGGCCTTCCTT 778
Query 757 CTCAAGCCTTTGAATACATCAAATCCAACGGTGGCCTCGACACAGAGGAAGCTTATCCTT 816
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 779 CTCAAGCCTTTGAATACATCAAATCCAACGGTGGCCTCGACACAGAGAAAGCTTATCCTT 838
Query 817 ACATCGGGAAAGATGGAACCTGCAAATTTTCAGCAGAAAATGTTGGTGTACAAGTCCTCG 876
| | ||| ||||||| |||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 839 ATACCGGTAAAGATGAAACCTGCAAATTTTCAGCTGAAAACGTTGGTGTACAAGTCCTCA 898
Query 877 ACTCAGTCAACATTACTCTGGGTGCTGAAGATGAATTGAAGCATGCGGTTGGATTGGTAC 936
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 899 ACTCAGTCAACATTACTCTGGGTGCTGAAGATGAACTGAAGCATGCGGTTGGATTGGTAC 958
Query 937 GACCAGTAAGCATAGCATTCGAGGTTATACACTCGTTCCGGCTTTACAAGAGTGGAATTT 996
| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 959 GGCCAGTAAGCATAGCATTTGAGGTTATACACTCGTTCCGGCTTTACAAGAGTGGAGTTT 1018
Query 997 ACACTGATAGTCACTGTGGAAGTACTCCAATGGATGTGAACCACGCGGTTTTGGCGGTTG 1056
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1019 ACACTGATAGTCACTGTGGAAGTACTCCAATGGATGTGAACCACGCGGTTTTGGCCGTTG 1078
Query 1057 GTTATGGAGTTGAAGACGGTGTACCGTATTGGCTTATTAAGAACTCATGGGGAGCGGATT 1116
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1079 GTTATGGAGTTGAAGACGGTGTACCATATTGGCTTATTAAGAACTCATGGGGAGCGGATT 1138
Query 1117 GGGGCGACAAAGGCTACTTCAAGATGGAGATGGGGAAGAACATGTGTGGTAAGTATTGCT 1176
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 GGGGCGACAAAGGTTACTTCAAGATGGAGATGGGGAAGAACATGTGTGGTAAGTATTGCT 1198
Query 1177 ACATGTGCATCGTACCCCGTTGTGGCTTGAGATGATCAACAGCGAATGTGGTTGGTCAAT 1236
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1199 ACATGTGCATCATACCCCGTTGTGGCTTGAGATGATCA---GCGAATGTGGTTGGTCAAT 1255
Query 1237 TATCAAATTACGAAAATGTTCGCATATTTATTGGATTAAGACATTACTTTTTAAGTTGGG 1296
||||||||||||||| ||||| | ||||||||||||||||||||||| | ||||||||
Sbjct 1256 TATCAAATTACGAAA-TGTTCACGTATTTATTGGATTAAGACATTACGTAA-AAGTTGGG 1313
Query 1297 GACTTGGGAATGCATATTGTTTATGCTTGTTGTAATATAAA--GGTATGTTCATATGTAC 1354
|||||||||||||||| ||||||||||||||||| ||||| ||| |||| ||||||||
Sbjct 1314 -ACTTGGGAATGCATATGGTTTATGCTTGTTGTAACATAAAAAGGTCTGTTAATATGTAC 1372
Query 1355 AAAATAAAGCCAAAACTATAGACGATAAATTTATATTATTTGCATGTTAAATTTAAGAAC 1414
||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||| ||||
Sbjct 1373 AAAATAAAGCCAAAACTATAGACGACAAATTTATAATATTTTCATGTTAAATTTATGAAC 1432
Query 1415 ATAAATTGATTT 1426
||||||||||||
Sbjct 1433 ATAAATTGATTT 1444
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70280763000
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5