BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496175
Length=1528
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60370.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 2143 0.0
AT3G57110.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 375 5e-103
> AT5G60370.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; CONTAINS InterPro DOMAIN/s: Defects-in-morphology
protein 1-like, mitochondrial (InterPro:IPR019190); BEST
Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57110.1);
Has 1807 Blast hits to 1807 proteins in 277 species:
Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347;
Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source:
NCBI BLink). | chr5:24282838-24285033 FORWARD LENGTH=1535
Length=1535
Score = 2143 bits (1160), Expect = 0.0
Identities = 1407/1521 (93%), Gaps = 37/1521 (2%)
Strand=Plus/Plus
Query 23 CCGAGTCACCCTCCGAGTCGCTTACCACGACCACATCCACTAAGCCCGCTGAATCCGAGA 82
|||||||| ||||||| ||||||| ||| ||||||||||||||||||||| |||||| ||
Sbjct 37 CCGAGTCAACCTCCGACTCGCTTAGCACCACCACATCCACTAAGCCCGCTCAATCCGGGA 96
Query 83 CTGTTGCTATTTCAAGCCCTCAAAGTCACCA--T-GTCTGCCCCGAGATCCCAATCGAGA 139
||||| ||||||||||||||||||||||||| | |||| ||||||||||||||||||||
Sbjct 97 CTGTTTCTATTTCAAGCCCTCAAAGTCACCATGTCGTCTTCCCCGAGATCCCAATCGAGA 156
Query 140 TCATCAGTGAAGAAGAAATGGCTATTATCGATGCAGCGCTTGCAGCCACGCGCTCAATCT 199
|| ||||||||||||||||||||||| |||||||||| ||||||||| | ||||| |||
Sbjct 157 TCGTCAGTGAAGAAGAAATGGCTATTCTCGATGCAGCTCTTGCAGCCTCCCGCTCCATCC 216
Query 200 TCCCTTCTGCGATCCGTTCGGCTTCTCCATCACGAAT-TCTCGCCGGCGAAAACCCCAAG 258
||||||| | ||||||||| | |||||| ||||| || | |||||||| || |||||
Sbjct 217 TCCCTTCCGTGATCCGTTCTGTTTCTCCGTCACGGATAAC-CGCCGGCGGAAGTCCCAAA 275
Query 259 ATGATCCGTTCAATTACTCTTTTCTCCAAGAGGAAATTATCGGCTTGTTCAGATATCGAA 318
| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 276 ACAATCCGCTCAATTACTCTCTTCTCCAAGAGGAAATTATCGGCTTGTTCAGATATCGAA 335
Query 319 GAGTCTTATTTGCATCGATTTAGGAGAAATCAAGCTTTAGGTGTCACAGATCTCACCGGC 378
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 336 GAGTCTTATCTACATCGATTTAGGAGAAATCAAGCTTTAGGTGTCACAGATCTCACCGGA 395
Query 379 ACGGAATGGTGTGAGAAACAAATGGAGAATGTTCTTTGTTTTGGCAGGAGAAAAGTCAAT 438
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 396 ACTGAATGGTGTGAGAAACAAATGGAGAATGTTCTTTGTTTTGGCAGGAGAAAAGTCAAT 455
Query 439 AAAGCAATGAAACTTGGTCAGGCTCGTCATTTGCAGCTTGAAGAAGAGGTAGTTAAAAAG 498
||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 456 AAAGCTATGAAAGTTGGTCAGGCTCGTCATTTGCAGCTTGAAGAAGAGGTAGTTAAAAAA 515
Query 499 GTGAGAGTAAGAGTTGAATCAAATGAAGATAAGTGGGCATTGAAGCTCTTAAATTCCATC 558
|||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 516 GTGAGAGTAAAAGTTGAATCAAATGAAGATAAGTGGGCATTGAAGCTGTTGAATTCCATT 575
Query 559 GCTGGTGTTAATCAGTTCTTGTTTGAAGGACGAACTCGTGAATTGCTACTCTTAGGATTT 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 576 GCTGGTGTTAATCAGTTCTTGTTTGAAGGACGAACTCGTGAATTGCTACTCTTAGGATTT 635
Query 619 GTTGGAGGTCAATGGATTGTGGGAATTATTGATGAGCTTAGAAGGGCGTACGCAGAGGAA 678
|||||||||||||||||||||||||||||||| |||||||||| |||||| ||||| ||
Sbjct 636 GTTGGAGGTCAATGGATTGTGGGAATTATTGACGAGCTTAGAAAGGCGTATGCAGAAGAG 695
Query 679 TCTTCTGATACCGGACCAATATTGATAGATACAAAGACTCGACTCCGTGATACACTCCCA 738
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 696 TCTTCTGATAGCGGACCAATATTGATAGATACAAAGACTCGACTCCGTGATACACTTCCA 755
Query 739 GCTGAGCCACAGAGGAGGAATGGAAGGCTTCAGCTAATGCTTTACAAGCTTCTATGGGAC 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 756 GCTGAGCCACAGAGGAGGAATGGAAGGCTTCAGCTAATGCTTTACAAGCTTCTATGGGAC 815
Query 799 ACTATTGTGAAAGAAGGGTTCCCGACGGGACCTTTTTTCGACTACTTCTCTTTGAATCGA 858
|||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||
Sbjct 816 ACTATTGTGAAAGAAGGGTTTCCAACGGGACCTTTTTTCGACTACTTTTCTTTGAATCG- 874
Query 859 CA-TTATATCTTATCCCAAGATGTCAGAGATAACATTGCTAATGCAGGTATCCAAGCTCA 917
|| |||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 875 CAATTATGTCTTATCCCAAGATGTCAGAGATCACATTGCTAATGCAGGTATCAAAGCTCA 934
Query 918 GACACTTGAAGAGATAGTTAGGTACTATGAAAACACTTTTAAGATGCTTCCTCTAGCAAA 977
|||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 935 GACACTTGAAGAGATAGTTAGGTACTATGAAAACACTTTTCAGATGCTTCCGATAGCAAA 994
Query 978 TGATCAACTATTACTAAAGTACGAGTTTCAGAAGGACCAATCTATAATAGCTGAGATAAG 1037
| |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 995 TAATCAACTATTACTAAAGTACGAGTTTCAGAAGGACCAATCTATAATAGCTGAAATTAG 1054
Query 1038 ATTCAACCATGATCATGAATGGGTGATGAGCAAATATAGAGAAGTCATTGAGTTCTGGAG 1097
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1055 ATTCAACCATGATCATGAATGGGTGATGAGCAAATATAGAGAAGTCATTGAGTTCTGGAG 1114
Query 1098 AAATGAACGAGAAGCTGAGTACACTCCTGAAGAAGAACGTTGGAAATGTCGGTATTGCCA 1157
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1115 AAATGAACGAGAAGCTGGGTACACTCCTGAAGAAGAACGTTGGAAATGTCGGTATTGCCA 1174
Query 1158 ATTTGCCAAGTCTTGCCCTGGAAATCCGAGTTTTGAATCTCCTAGCCCGAGCTCACCACC 1217
|||||| ||||||||||||||||| |||||||| |||||||||||| | ||||||||| |
Sbjct 1175 ATTTGCTAAGTCTTGCCCTGGAAACCCGAGTTTCGAATCTCCTAGCACAAGCTCACCAAC 1234
Query 1218 AAGAGAGGCTTCTCCTCCTTTACCAAGCTAAAAAGAAGATGAAAAGTTGATTCTTTCACC 1277
|||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1235 AAGAGAGGCT-C-C-TCCTTTACCAAGCTAAAAAGAAGATGAAAAGTTGATTCTTTCACC 1291
Query 1278 GAAAGCTGCTAAATGCTAACACATATGTTTGTCTCGTCTTTAATTTCCACATTTGCTTCC 1337
||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||
Sbjct 1292 GAAAGCTGCTAAATGCTAACATATATGTTTGTGTTGTCTTTAATTTCCACATTTGCTTCC 1351
Query 1338 CTCTTCATTTTAAATTGCATAGCAGTTAAGTGATTAAACCGTGGTTTGGTTAGG-T-G-T 1394
|| | | || |||||||||||||||||||||||||||||||||| ||||| | | |
Sbjct 1352 CT-T--A----AA-TTGCATAGCAGTTAAGTGATTAAACCGTGGTTTGATTAGGGTTGGT 1403
Query 1395 -A--C---C-AAGATTGATTTGTACCGGGATGCCGCAATTTGATTATCGCGTATCCCGTT 1447
| | | ||||||||||||||||||||||||||||||||||||| | ||||| |||
Sbjct 1404 TAGGCGTACCAAGATTGATTTGTACCGGGATGCCGCAATTTGATTATTGTGTATC--GTT 1461
Query 1448 TCCAATACACGCTTTGTATAATGTATGTATCATCATTATTGGAATCTGTAAGGTAATCGA 1507
||||| ||||||||||||| |||| ||||||| ||||||||| ||||||||||||
Sbjct 1462 TCCAACACACGCTTTGTAT---GTAT----CATCATTGTTGGAATCTCTAAGGTAATCGA 1514
Query 1508 CAATAGCCTTTTTACGTTCTG 1528
||||||| |||||||||||||
Sbjct 1515 CAATAGCATTTTTACGTTCTG 1535
Score = 65.8 bits (35), Expect = 1e-09
Identities = 39/41 (95%), Gaps = 0/41 (0%)
Strand=Plus/Plus
Query 1 GTTGCTTCCGCATAAAACATGGCCGAGTCACCCTCCGAGTC 41
|||| ||||| ||||||||||||||||||||||||||||||
Sbjct 3 GTTGGTTCCGAATAAAACATGGCCGAGTCACCCTCCGAGTC 43
> AT3G57110.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G60370.1); Has 16 Blast
hits to 16 proteins in 5 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr3:21134924-21135334
FORWARD LENGTH=411
Length=411
Score = 375 bits (203), Expect = 5e-103
Identities = 312/363 (86%), Gaps = 13/363 (4%)
Strand=Plus/Plus
Query 23 CCGAGTCACCCTCCGAGTCGCTTACCACGACCACATCCACTAAGCCCGCTGAATCCGAGA 82
|||||||| |||||| || ||||| ||| ||||||||||||||||||||| |||||| ||
Sbjct 17 CCGAGTCAACCTCCGCGTTGCTTAGCACCACCACATCCACTAAGCCCGCTCAATCCGGGA 76
Query 83 CTGTTGCTATTTCAAGCCCTCAAAGTCACCA--T-GTCTGCCCCGAGATCCCAATCGAGA 139
||||| ||||||||||||||||||||||||| | |||| ||| ||||||||||||||||
Sbjct 77 CTGTTTCTATTTCAAGCCCTCAAAGTCACCATGTCGTCTTCCCTGAGATCCCAATCGAGA 136
Query 140 TCATCAGTGAAGAAGAAATGGCTATTATCGATGCAGCGCTTGCAGCCACGCGCTCAATCT 199
|||||| |||||||||||| | |||| |||||||||| ||||||||| | | ||| |||
Sbjct 137 TCATCAATGAAGAAGAAATAGTTATTCTCGATGCAGCTCTTGCAGCCTCCCACTCCATCC 196
Query 200 TCCCTTCTG-CGATCCGTTCGGCTTCTCCATCACGA-ATTCTCGCCGGCGAAAACCCCAA 257
| ||||| | | || ||||| | |||||| |||| | || ||||||||| || |||||
Sbjct 197 TACCTTCCGTC-ATTCGTTCTGTTTCTCCGTCAC-AGATGATCGCCGGCG-GAAGCCCAA 253
Query 258 -GA-TGATCCGTTCAATTACTCTTTTCTCCAAGAGGAAATTATCGGCTTGTTCAGATATC 315
| | || ||||||||||||||||||||||||||||||||||| ||||||| | |||||
Sbjct 254 TAACT-ATTCGTTCAATTACTCTTTTCTCCAAGAGGAAATTATCAGCTTGTTTATATATC 312
Query 316 GAAGAGTCTTATTTGCATCGATTTAGGAGAAATCAAG-CTTTAGGTGTCACAGATCTCAC 374
|||||||||||| | ||||||||||| |||||||| | ||||||||||||||||||||||
Sbjct 313 GAAGAGTCTTATCTACATCGATTTAGAAGAAATCA-GTCTTTAGGTGTCACAGATCTCAC 371
Query 375 CGG 377
|||
Sbjct 372 CGG 374
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75401218590
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5