BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg496184

Length=645
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G60400.3 | Symbols:  | unknown protein; Has 35333 Blast hits...   612    1e-174


> AT5G60400.3 | Symbols:  | unknown protein; Has 35333 Blast hits 
to 34131 proteins in 2444 species: Archae - 798; Bacteria 
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses 
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:24291140-24291932 
REVERSE LENGTH=699
Length=699

 Score =  612 bits (331),  Expect = 1e-174
 Identities = 440/489 (90%), Gaps = 22/489 (4%)
 Strand=Plus/Plus

Query  1    TCAAATGCACAACACACCACAGGACaaaaaaaTCTTTCTCTCATATATTAATTACATGGT  60
            ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct  5    TCAAATGCACAACACACCACAGGACAAAAAAATCTTTCTCTC--ATATTAATTACATGGT  62

Query  61   ACTAGTATACATCTAGACCCTCTTTAACCCATTACCAATTCAAGATCTTGTC----tttt  116
            || | |||| ||||| || |||||||||||||||||||||||||||||||||    ||||
Sbjct  63   ACCATTATATATCTATACTCTCTTTAACCCATTACCAATTCAAGATCTTGTCTTTTTTTT  122

Query  117  t-ttCTTAACAACAAGATCCAAAATTCTGAAAAATCCACTCACACTACACAAGAAAGAAA  175
            | ||||||| ||||||||||||| |||||||||||||| |  ||||||| ||||||||||
Sbjct  123  TCTTCTTAAAAACAAGATCCAAATTTCTGAAAAATCCA-T-TCACTACA-AAGAAAGAAA  179

Query  176  TGCTGTCAACAACTCTTAGTGGGT-ATTATGGCTTCCCTCTGTGCATCTCTGGGATCACT  234
            ||||||| |||||||||||| ||| | |||||||||||||||||||||||||||||||||
Sbjct  180  TGCTGTCTACAACTCTTAGT-GGTAACTATGGCTTCCCTCTGTGCATCTCTGGGATCACT  238

Query  235  CAGCAATTAAGTCTCTCCAAAGAAATGGCAGATCATGACAAGAGAAGGAAGGTGATACAG  294
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  239  CAGCAATTAAGTCTGTCCAAAGAAATGGCAGATCATGACAAGAGAAGGAAGGTGATACAG  298

Query  295  CGGAAAAGGAGACCAGAAGGTAAACATGAGTGCATGAGCCATGGTGAAGATGATGCGGAA  354
             ||| ||||||| |||||||||||||||||| || ||||||||||||||| |||| ||| 
Sbjct  299  AGGAGAAGGAGATCAGAAGGTAAACATGAGTACAAGAGCCATGGTGAAGAAGATGTGGAG  358

Query  355  AGGCTTCAAGAGATGAGAGAGGATAAAGATGTTAGAGATCTAGTTGATTTATTACAAGAT  414
            |||||||||||||  |  ||  |    ||||||||||||||||||| |||| ||||||||
Sbjct  359  AGGCTTCAAGAGA--AT-GA--A----GATGTTAGAGATCTAGTTGCTTTACTACAAGAT  409

Query  415  CTAGGTTTGTGGAGCTTTTCTTCTCACACAGCCAAAGCTGCTTAGTGGTTTC-CTCCTAT  473
            ||||| ||||||||||||||||||||||||||||||||||||||||| |||  ||  |||
Sbjct  410  CTAGGCTTGTGGAGCTTTTCTTCTCACACAGCCAAAGCTGCTTAGTGTTTTTACTTTTAT  469

Query  474  TACAAGATG  482
            |||||||||
Sbjct  470  TACAAGATG  478



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31145171140


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5