BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg496184 Length=645 Score E Sequences producing significant alignments: (Bits) Value AT5G60400.3 | Symbols: | unknown protein; Has 35333 Blast hits... 612 1e-174 > AT5G60400.3 | Symbols: | unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:24291140-24291932 REVERSE LENGTH=699 Length=699 Score = 612 bits (331), Expect = 1e-174 Identities = 440/489 (90%), Gaps = 22/489 (4%) Strand=Plus/Plus Query 1 TCAAATGCACAACACACCACAGGACaaaaaaaTCTTTCTCTCATATATTAATTACATGGT 60 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 5 TCAAATGCACAACACACCACAGGACAAAAAAATCTTTCTCTC--ATATTAATTACATGGT 62 Query 61 ACTAGTATACATCTAGACCCTCTTTAACCCATTACCAATTCAAGATCTTGTC----tttt 116 || | |||| ||||| || ||||||||||||||||||||||||||||||||| |||| Sbjct 63 ACCATTATATATCTATACTCTCTTTAACCCATTACCAATTCAAGATCTTGTCTTTTTTTT 122 Query 117 t-ttCTTAACAACAAGATCCAAAATTCTGAAAAATCCACTCACACTACACAAGAAAGAAA 175 | ||||||| ||||||||||||| |||||||||||||| | ||||||| |||||||||| Sbjct 123 TCTTCTTAAAAACAAGATCCAAATTTCTGAAAAATCCA-T-TCACTACA-AAGAAAGAAA 179 Query 176 TGCTGTCAACAACTCTTAGTGGGT-ATTATGGCTTCCCTCTGTGCATCTCTGGGATCACT 234 ||||||| |||||||||||| ||| | ||||||||||||||||||||||||||||||||| Sbjct 180 TGCTGTCTACAACTCTTAGT-GGTAACTATGGCTTCCCTCTGTGCATCTCTGGGATCACT 238 Query 235 CAGCAATTAAGTCTCTCCAAAGAAATGGCAGATCATGACAAGAGAAGGAAGGTGATACAG 294 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 239 CAGCAATTAAGTCTGTCCAAAGAAATGGCAGATCATGACAAGAGAAGGAAGGTGATACAG 298 Query 295 CGGAAAAGGAGACCAGAAGGTAAACATGAGTGCATGAGCCATGGTGAAGATGATGCGGAA 354 ||| ||||||| |||||||||||||||||| || ||||||||||||||| |||| ||| Sbjct 299 AGGAGAAGGAGATCAGAAGGTAAACATGAGTACAAGAGCCATGGTGAAGAAGATGTGGAG 358 Query 355 AGGCTTCAAGAGATGAGAGAGGATAAAGATGTTAGAGATCTAGTTGATTTATTACAAGAT 414 ||||||||||||| | || | ||||||||||||||||||| |||| |||||||| Sbjct 359 AGGCTTCAAGAGA--AT-GA--A----GATGTTAGAGATCTAGTTGCTTTACTACAAGAT 409 Query 415 CTAGGTTTGTGGAGCTTTTCTTCTCACACAGCCAAAGCTGCTTAGTGGTTTC-CTCCTAT 473 ||||| ||||||||||||||||||||||||||||||||||||||||| ||| || ||| Sbjct 410 CTAGGCTTGTGGAGCTTTTCTTCTCACACAGCCAAAGCTGCTTAGTGTTTTTACTTTTAT 469 Query 474 TACAAGATG 482 ||||||||| Sbjct 470 TACAAGATG 478 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31145171140 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5