BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496195
Length=867
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60490.1 | Symbols: FLA12 | FASCICLIN-like arabinogalactan-p... 1190 0.0
> AT5G60490.1 | Symbols: FLA12 | FASCICLIN-like arabinogalactan-protein
12 | chr5:24325727-24326702 REVERSE LENGTH=976
Length=976
Score = 1190 bits (644), Expect = 0.0
Identities = 748/799 (94%), Gaps = 3/799 (0%)
Strand=Plus/Plus
Query 1 ACACAAACAAAATATCAACATTCTTGATAACAAAGCCATGGAACATTCTCTCATCCTCCT 60
|||||||||||||||||||| |||||| |||| |||||||||||||||||||||| ||||
Sbjct 1 ACACAAACAAAATATCAACACTCTTGAAAACAGAGCCATGGAACATTCTCTCATCATCCT 60
Query 61 CCTCTTCACCGTCCTCGTCCTACTCACCACCACTCCCGGAA-CCTTATCTCAGCCCTCTC 119
|||||||||||||||| |||| ||||||||||||||||||| || |||||||||||||||
Sbjct 61 CCTCTTCACCGTCCTCCTCCTCCTCACCACCACTCCCGGAATCC-TATCTCAGCCCTCTC 119
Query 120 CAGCCGTCGCTCCGGCACCACCAGGACCCACAAACGTTACCAAAATCCTAGAGAAAGCTG 179
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CAGCCGTCGCTCCGGCCCCACCAGGACCCACAAACGTTACCAAAATCCTAGAGAAAGCTG 179
Query 180 GTCAATTCACCGTCTTTATCCGACTCCTCAAATCCACCGGAGTCGCTAACCAACTCTACG 239
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 180 GTCAATTCACCGTCTTCATCCGACTCCTCAAATCCACTGGAGTCGCTAACCAACTCTACG 239
Query 240 GCCAACTAAAGAACTCCGACAATGGAATCACTATCTTCGCACCGAGTGATTCCTCGTTCT 299
|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 240 GCCAACTAAACAACTCCGACAATGGAATCACTATATTCGCACCGAGTGATTCCTCGTTCA 299
Query 300 CCGGCCTCAAAGCCGGAACCCTAAATTCCTTAACCGACGAGCAACAAGTAGAGCTTATTC 359
|||| ||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 300 CCGGTCTCAAAGCCGGGACCCTAAATTCGTTAACCGATGAGCAACAAGTAGAGCTTATTC 359
Query 360 AGTTTCATGTCATACCAAGTTACGTTTCTTCCTCTAACTTCCAAACGATAAGTAACCCTC 419
||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||
Sbjct 360 AGTTTCATGTCATACCAAGTTACGTCTCTTCCTCAAACTTCCAAACAATAAGTAACCCTC 419
Query 420 TACGGACTCAGGCCGGTGCCTCTGCCGATGGACATTTTCCACTTAACGTTACCACCAGTG 479
| |||||||||||||||| ||| ||||||||||||||||| || ||||||||||||||||
Sbjct 420 TCCGGACTCAGGCCGGTGACTCCGCCGATGGACATTTTCCTCTCAACGTTACCACCAGTG 479
Query 480 GCAATACCGTAAATATCACGACCGGTGTAACCAACACCACCGTCTCCGGTAATGTCTACA 539
|||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||
Sbjct 480 GCAATACCGTAAATATCACGTCCGGCGTAACCAACACCACCGTCTCCGGCAATGTCTACA 539
Query 540 GCGATGGACAACTCGCTGTTTACCAGGTCGATAAGGTTTTGCTTCCACAGCAAGTTTTCG 599
|||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 540 GCGATGGACAGCTCGCTGTTTATCAGGTCGATAAGGTTTTGCTTCCACAACAAGTTTTCG 599
Query 600 ATCCTCGTCCACCTGCTCCGGCTCCGGCTCCGTCAGTCTCGAAATCAAAGAAGAAGAAGG 659
|||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 600 ATCCTCGTCCTCCTGCTCCGGCTCCGGCTCCGTCTGTATCGAAATCAAAGAAGAAGAAGG 659
Query 660 AAGACAGTGATAGTTCCGGTGATGATACTCCGGCGGATGCTTCGTTTGCTTCACGTAACG 719
| ||||||||||||||| |||||||| |||||||||||||||||||||||| ||||| |
Sbjct 660 ATGACAGTGATAGTTCCAGTGATGATTCTCCGGCGGATGCTTCGTTTGCTTTGCGTAATG 719
Query 720 TTGGTTCTCTGCGTGATGCGGTGTCGTTTTGCTTCATGAGCGCATTACTCGGATGGTTTT 779
|||||||| || |||||||||||||||||||| ||||||| | | | |||| ||||||||
Sbjct 720 TTGGTTCTGTGTGTGATGCGGTGTCGTTTTGCGTCATGAGTGTAATGCTCGCATGGTTTT 779
Query 780 ATTTGTGATGATAAG-TTT 797
||||||||||| ||| |||
Sbjct 780 ATTTGTGATGAAAAGCTTT 798
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42297151774
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5