BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496196
Length=1072
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60510.1 | Symbols: | Undecaprenyl pyrophosphate synthetase... 1668 0.0
AT5G60500.1 | Symbols: | Undecaprenyl pyrophosphate synthetase... 1243 0.0
> AT5G60510.1 | Symbols: | Undecaprenyl pyrophosphate synthetase
family protein | chr5:24330338-24331768 FORWARD LENGTH=1269
Length=1269
Score = 1668 bits (903), Expect = 0.0
Identities = 1019/1075 (95%), Gaps = 7/1075 (1%)
Strand=Plus/Plus
Query 1 CCTCTGATAACCAAAAAAGCCCGATTTTCCGAGATGAATAATACCCGAGAAGAAGTAGGC 60
|||| ||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||
Sbjct 189 CCTCCGATAACCAAAAAATCCCTATTTTCCGAGATGAATAATACACGAGAAGAAGTAGGG 248
Query 61 GAATTCACTCAAATCTTCAACGCTTTAATGAGTCTAATGAGGACATTTATATTCAAAGTT 120
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 249 GAATTCACTCAAATCTTCAACGCTTTAATGAGTCTTATGAGGAAATTTATATTCAAAGTT 308
Query 121 CTACGCGTCGGTCCAATCCCTACTAACATTTCATTCATCATGGATGGAAACCGCAGGTTC 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 309 CTACGCGTCGGTCCAATCCCTACTAACATTTCTTTCATCATGGATGGAAACCGTAGGTTC 368
Query 181 GCCAAGAAACGCAATCTTGAAGGCTTAGACGCAGGACACAGAGCCGGTTTCATATCCGTG 240
|||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 369 GCCAAGAAACGCAATCTTGAAGGCCTAGACGCAGGACACAGAGCTGGTTTCATATCCGTC 428
Query 241 AAATATATTCTTCAATACTGCAAAGAGATTGGTGTACCGTACGTCACACTCTACGCCTTT 300
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 429 AAATATATTCTTCAATACTGCAAAGAGATTGGTGTACCGTATGTCACACTCTACGCATTT 488
Query 301 GGTATGGACAATTTCAAGAGAGGACCTGAAGAAGTCAAGTGTGTCATGGATCTAATGCTG 360
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 489 GGTATGGACAATTTCAAGAGAGGACCTGAAGAAGTCAAGTGTGTGATGGATCTAATGCTT 548
Query 361 GAGAAAGTCGAGCTCACGATTGATCAAGCTGTATCCGGGAATATGAACGGCGTGAGAATT 420
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 549 GAGAAAGTCGAGCTCACGATCGATCAAGCTGTATCAGGGAATATGAACGGCGTGAGAATA 608
Query 421 ATCTTTGCCGGTGATTTGAATTCGTTAAACGAGCATTTTAGAGCTGCGACGCAGAAACTG 480
||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 609 ATCTTTGCCGGCGATTTGAATTCGTTAAACGAGCGTTTTAGAGCTGCGACAAAGAAACTG 668
Query 481 ATGAAGCTTACGGAGGAGAATAGAGATCTGATTGTTGTGGTTTGCGTTGCTTACAGCACA 540
||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 669 ATGGAGCTTACGGAGGAGAACAGAGATCTGATTGTTGTGGTTTGCGTTGCTTATAGCACA 728
Query 541 AGTGTCGAGATTGTTCATGCTGTTCGAGATTCTTGCGTTAGAAAGAGTAAAATTGGAGAT 600
||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||
Sbjct 729 AGTGTCGAGATTGTTCACGCTGTTCGAGATTCTTGTGTTAGAAAGAGTAAAACTGGAGAT 788
Query 601 GGTTCTGT-AGCTTTGGAGTTGAGTGATATTGAAGAGTGTATGTATACATCGGTTGTGCC 659
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 789 GGTTCT-TCAGCTTTGGAGTTGAGTGATATTGAAGAGTGTATGTATACATCGGTTGTGCC 847
Query 660 GGTTCCGGATCTTGTGATAAGAACCGGAGGAGGAGATCGGCTGAGTAACTTCATGACGTG 719
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 848 GGTTCCGGATCTTGTGGTAAGAACCGGAGGAGGAGATCGGCTGAGTAACTTCATGACGTG 907
Query 720 GCAAACTTCTAGGTCACTTCTTCACAGAACGGAGGCTCTTTGGCCGGAGTTAGGGCTCTG 779
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 908 GCAAACTTCTAGGGCACTTCTTCATAGAACGGAGGCTCTTTGGCCGGAGTTAGGGCTATG 967
Query 780 GCATTTGGTTTGGGCCATTCTGAAATTCCAGAGAATGCAAGATTACTTGCAGAAGAAGAA 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 968 GCATTTGGTTTGGGCCATTCTGAAATTCCAGAGAATGCAAGATTACTTGCAGAAGAAGAA 1027
Query 840 GAAGTTCCACTAAATAGTTTCTAAGTTAAACCCTAGAATGAACTTTAACCCTTACGTTTG 899
|||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1028 GAAGCTCCACTAAATAGTTTCTAAGTTAAACCCTAGAATGAACTTAAACCCTTATGTTTG 1087
Query 900 ATTACAGGTTTCTTGTGGTGTAAGAAACAAAGAACCGAAACTGTGAAAACACAAGAAAAT 959
|||||| ||||||||||||||||||||||| |||||||||||| |||| |||||||||||
Sbjct 1088 ATTACATGTTTCTTGTGGTGTAAGAAACAACGAACCGAAACTGAGAAACCACAAGAAAAT 1147
Query 960 CCTTTTTATTATGTATGTGATATAAA-TAACAAGCACAAAGACATGAAACATCGATAAT- 1017
||||||||||||||||| |||| ||| |||||| ||| ||||| |||||||||||||
Sbjct 1148 CCTTTTTATTATGTATGGGATACAAAATAACAAAAACA--GACATAAAACATCGATAATT 1205
Query 1018 ATTTCAAATTAACGATGCTAAAACACTAAAATTAGAGGCTTAATTTAAAGATAGT 1072
||| ||| |||||||||||||||||||| |||||||||||||||| ||||| |||
Sbjct 1206 ATT-CAATTTAACGATGCTAAAACACTACAATTAGAGGCTTAATTAAAAGACAGT 1259
> AT5G60500.1 | Symbols: | Undecaprenyl pyrophosphate synthetase
family protein | chr5:24328757-24329785 FORWARD LENGTH=1029
Length=1029
Score = 1243 bits (673), Expect = 0.0
Identities = 829/902 (92%), Gaps = 20/902 (2%)
Strand=Plus/Plus
Query 2 CTCTGATAACCAAAAAAGCCCGATTTTCCGAGATGAATAATACCCGAGAAGAAGTAGGCG 61
||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||| |
Sbjct 27 CTCTGATAACCAAAAAAGCCCTATTTTCCGAGATG---AATACCCTAGAAGAAGTAGATG 83
Query 62 AATTCACTCAAATCTTCAACGCTTTAATGAGTCTAATGAGGACATTTATATTCAAAGTTC 121
||| |||||| |||||||||||||| |||||||||||||||| |||| | |||| |||||
Sbjct 84 AATCCACTCATATCTTCAACGCTTTGATGAGTCTAATGAGGAAATTTTTGTTCAGAGTTC 143
Query 122 TACGCGTCGGTCCAATCCCTACTAACATTTCATTCATCATGGATGGAAACCGCAGGTTCG 181
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 144 TATGCGTCGGTCCAATCCCTACTAACATTTCATTCATCATGGATGGAAACCGCAGGTTCG 203
Query 182 CCAAGAAACGCAATCTTGA-AGGCTTAGACGCAGGACACAGAGCCGGTTTCATATCCGTG 240
| ||||||| ||||||| | |||| |||| |||||||| ||||| |||||||||||||||
Sbjct 204 CTAAGAAACACAATCTT-ATAGGCCTAGATGCAGGACATAGAGCTGGTTTCATATCCGTG 262
Query 241 AAATATATTCTTCAATACTGCAAAGAGATTGGTGTACCGTACGTCACACTCTACGCCTTT 300
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 263 AAATATATTCTTCAATACTGCAAAGAGATTGGTGTACCGTACGTCACACTCCACGCGTTT 322
Query 301 GGTATGGACAATTTCAAGAGAGGACCTGAAGAAGTCAAGTGTGTCATGGATCTAATGCTG 360
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 323 GGTATGGATAATTTCAAGAGAGGACCTGAAGAAGTCAAGTGTGTGATGGATCTAATGCTT 382
Query 361 GAGAAAGTCGAGCTCACGATTGATCAAGCTGTATCCGGGAATATGAACGGCGTGAGAATT 420
||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||
Sbjct 383 GAGAAAGTCGAGCTCGCGATCGATCAAGCTGTATCAGGGAATATGAACGGCGTGAGAATA 442
Query 421 ATCTTTGCCGGTGATTTGAATTCGTTAAACGAGCATTTTAGAGCTGCGACGCAGAAACTG 480
|||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 443 ATCTTTGCCGGTGATTTGGATTCGTTAAACGAGCATTTTAGAGCTGCGACAAAGAAACTG 502
Query 481 ATGAAGCTTACGGAGGAGAATAGAGATCTGATTGTTGTGGTTTGCGTTGCTTACAGCACA 540
||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 503 ATGGAGCTTACGGAGGAGAATAGAGATCTGATTGTGGTGGTTTGCGTTGCTTACAGCACA 562
Query 541 AGTGTCGAGATTGTTCATGCTGTTCGAGATTCTTGCGTTAGAAAGA-GTA-AAATTGGAG 598
||| ||||||||||||| ||||||||| | ||||| |||||||| | ||| || |||||
Sbjct 563 AGTCTCGAGATTGTTCACGCTGTTCGAAAATCTTGTGTTAGAAA-ATGTACGAA-TGGAG 620
Query 599 ATGGTTC-TGTAGC-TTTGGAGTTGAGTGATATTGAAGAGTGTATGTATACATCGGTTGT 656
|| | || |||| | |||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 621 AT-GATCTTGTA-CTTTTGGAGTTGAGTGATGTTGAAGAGTGTATGTATACATCGATTGT 678
Query 657 GCCGGTTCCGGATCTTGTGATAAGAACCGGAGGAGGAGATCGGCTGAGTAACTTCATGAC 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 679 GCCGGTTCCGGATCTTGTGATAAGAACCGGAGGAGGAGATCGGCTGAGTAACTTCATGAC 738
Query 717 GTGGCAAACTTCTAGGTCACTTCTTCACAGAACGGAGGCTCTTTGGCCGGAGTTAGGGCT 776
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 739 GTGGCAAACTTCGAGGTCTCTTCTTCACAGAACGGAGGCTCTTTGGCCGGAGTTAGGGCT 798
Query 777 CTGGCATTTGGTTTGGGCCATTCTGAAATTCCAGAGAATGCAAGATTACTTG-CAGAAGA 835
|||||||||||||||||| ||||| |||||||| |||||||||||||||||| | |||||
Sbjct 799 CTGGCATTTGGTTTGGGCAATTCTTAAATTCCAAAGAATGCAAGATTACTTGAC-GAAGA 857
Query 836 AGAAGAAGTTCCACTAAATAGTTTCTAA-GTTAAACCCT--AG-AATGAACTTT-AACCC 890
|||| ||| || | || ||||||||||| |||||||||| || || ||||||| ||| |
Sbjct 858 AGAAAAAGCTCGATTAGATAGTTTCTAAAGTTAAACCCTGCAGGAAAGAACTTTTAACTC 917
Query 891 TT 892
||
Sbjct 918 TT 919
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52509770070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5