BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496200
Length=1000
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60540.1 | Symbols: EMB2407, ATPDX2, PDX2 | pyridoxine biosy... 1557 0.0
> AT5G60540.1 | Symbols: EMB2407, ATPDX2, PDX2 | pyridoxine biosynthesis
2 | chr5:24336623-24338802 REVERSE LENGTH=1174
Length=1174
Score = 1557 bits (843), Expect = 0.0
Identities = 928/969 (96%), Gaps = 6/969 (1%)
Strand=Plus/Plus
Query 34 CAATGACCGTCGGAGTTTTAGCTTTGCAAGGTTCTTTCAATGAGCACATCGCGGCTCTGC 93
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 154 CAATGACCGTCGGAGTTTTAGCTTTGCAAGGTTCTTTCAATGAGCACATCGCGGCTCTGC 213
Query 94 GGCGGCTCGGTGTCCAAGGCGTCGAGATTAGGAAGGCTGAGCAGCTTCTCACCGTTTCTT 153
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 214 GGCGGCTCGGTGTCCAAGGCGTCGAGATTAGGAAGGCTGACCAGCTTCTCACCGTTTCTT 273
Query 154 CTCTCATCATTCCTGGCGGCGAGAGCACCACCATGGCCAAACTCGCCGAGTACCATAACT 213
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 274 CTCTTATCATTCCTGGCGGCGAGAGCACCACCATGGCCAAACTCGCCGAGTATCATAACT 333
Query 214 TGTTTCCGGCTCTACGTGAGTTTGTTAAGATGGGGAAACCTGTTTGGGGGACATGCGCGG 273
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 334 TGTTTCCGGCTCTACGTGAGTTTGTTAAGATGGGGAAACCTGTTTGGGGGACATGCGCAG 393
Query 274 GTCTTATATTCTTGGCAGACAGAGCGGTTGGTCAGAAAGAGGGAGGTCAAGAGTTAGTTG 333
||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||
Sbjct 394 GTCTTATATTCTTGGCAGACAGAGCAGTTGGTCAGAAAGAGGGAGGTCAGGAATTAGTTG 453
Query 334 GTGGCCTTGATTGCACTGTGCATAGGAACTTCTTCGGCAGCCAGATTCAAAGTTTTGAAG 393
|||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||
Sbjct 454 GTGGCCTTGATTGCACCGTACATAGGAACTTCTTCGGTAGCCAGATTCAAAGTTTTGAAG 513
Query 394 CTGATATCTCAGTACCTCAACTAACATCTCAAGAAGGTGGGCCAGAGACATACCGGGGAG 453
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 514 CTGATATCTTAGTACCTCAACTAACATCTCAAGAAGGTGGGCCAGAGACATACAGGGGAG 573
Query 454 TGTTCATACGTGCTCCAGCTGTTCTTGATGTAGGTCCTGATGTCGAAGTCCTGGCGGATT 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 574 TGTTCATACGTGCTCCAGCTGTTCTTGATGTAGGTCCTGATGTCGAAGTCCTGGCGGATT 633
Query 514 ATCCCGTCCCGTCAAACAAGGTCTTGTATTCAAGCTCTACCGTACAAATCCAAGAGGAAG 573
|||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 634 ATCCCGTCCCATCAAACAAGGTCTTGTATTCAAGCTCCACCGTACAAATTCAAGAGGAAG 693
Query 574 ATGCACTTCCTGAAACAAAAGTCATTGTTGCTGTGAAGCAAGGAAACTTGTTAGCTACTG 633
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 694 ATGCTCTTCCTGAAACAAAAGTCATTGTTGCTGTGAAGCAAGGAAACTTGTTAGCAACTG 753
Query 634 CTTTTCATCCCGAGCTTACTGCAGACACACGATGGCACAGTTATTTCATAAAGATGACGA 693
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 754 CTTTTCATCCCGAGCTTACTGCAGACACTCGATGGCACAGTTATTTCATAAAGATGACGA 813
Query 694 AAGAGATCGAACAGGGAGCTTCTTCAAACAGTAGTAACACTATTGTATCTGGTGGAGAAA 753
||||||| || || ||||||||||||| ||||||||| ||||||||||||| ||||||||
Sbjct 814 AAGAGATTGAGCAAGGAGCTTCTTCAAGCAGTAGTAAGACTATTGTATCTGTTGGAGAAA 873
Query 754 CAAGTGCCGGTCCCGAGCCAGCTAAGCCTGATCTTCCTATATTTCAATAACTGAACAGAG 813
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 874 CAAGTGCTGGTCCCGAGCCAGCTAAGCCTGATCTTCCTATATTTCAATAACTGAACAGAG 933
Query 814 AGTAGAGACACACTTCTTAAAATAAAAACTATAGAAAGTGTCAGATTCTTTATCTTTCTT 873
|| ||| |||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 934 AGAAGATACACACTTCTTAAAATAAAAACCAGAGAAAGTGTCAGATTCTTTATCTTTCTA 993
Query 874 ACA-ATGTTTTTGGAAAAATTTCAAGCTAGTTTGCAATTTGCACACAAGAAAGTTTCACA 932
| | ||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 994 A-AGATGTTTT-GGAAAAATTGCAAGCTAGTTTGCAATTTGCACTCAAGAAAGTTTCACA 1051
Query 933 AGACTCTTTAATGGATTCATGTACACTTGTTTCTTAATACAACTTT-TGTATACCGTTGA 991
|||||||||||||||||||||||| ||||||||| |||||||||| | ||||| |||||
Sbjct 1052 AGACTCTTTAATGGATTCATGTAC--TTGTTTCTTGATACAACTTTATATATACAGTTGA 1109
Query 992 ATCTCAAAC 1000
|||||||||
Sbjct 1110 ATCTCAAAC 1118
Score = 67.6 bits (36), Expect = 2e-10
Identities = 36/36 (100%), Gaps = 0/36 (0%)
Strand=Plus/Plus
Query 1 AAAAGGCTTTTGTGAGTGTCCCAATTCCATTCACAA 36
||||||||||||||||||||||||||||||||||||
Sbjct 65 AAAAGGCTTTTGTGAGTGTCCCAATTCCATTCACAA 100
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48978293325
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5