BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496203
Length=1210
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60570.1 | Symbols: | Galactose oxidase/kelch repeat superf... 1748 0.0
> AT5G60570.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:24347928-24350117 FORWARD LENGTH=1849
Length=1849
Score = 1748 bits (946), Expect = 0.0
Identities = 1067/1126 (95%), Gaps = 5/1126 (0%)
Strand=Plus/Plus
Query 40 TCTGCTTCTGCTTCTGTAGCTGTGAATTCAATGGTAGGAGAGGA-G--AACGATGGTCAT 96
||||||||||||||||||| |||||||| | |||||||||||| | ||||||||||||
Sbjct 502 TCTGCTTCTGCTTCTGTAGTTGTGAATTTGAGGGTAGGAGAGGAGGATAACGATGGTCAT 561
Query 97 CGCCTCAGGTTGGGATCTACTGACTC-GCTTCTCCCTGGTCTTATCGATGACGTTGCTCT 155
||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||
Sbjct 562 CGCCTCAGGTTGGGATCTAGTGACTCAG-TTCTCCCTGGTCTTATCGATGACGTTGCTCT 620
Query 156 TAATTGTCTTGCTTGGGTTCCGAGGTCAGATTATCCTTCCTTGTCATGTGTCAACAAGAA 215
||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 621 TAACTGTCTTGCTTGGGTTCCAAGGTCAGATTATCCTTCCTTGTCATGTGTAAACAAGAA 680
Query 216 GTACAATAAGTTGATCAACGGTGGTCATTTGTTTGCTCTGAGAAAACAATTGGGGGTAGT 275
||||||||||||||||||| ||||||||||||||||| ||||||| |||||||| ||||
Sbjct 681 GTACAATAAGTTGATCAACAGTGGTCATTTGTTTGCTTTGAGAAAGGAATTGGGGATAGT 740
Query 276 GGAGTATCTTGTTTTCATGGTTTGTGACCCGAGAGGTTGGTTGATGTTTTCTCCTATGAA 335
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 741 GGAGTATCTTGTTTTCATGGTTTGTGATCCGAGAGGTTGGTTGATGTTTTCTCCTATGAA 800
Query 336 AAAGAAGTGGATGGTGTTACCTAAAATGCCATGTGACGACTGCTTCAACCTCGCCGATAA 395
|||||| ||||||||||||||||||||||| |||||||| |||||||||| ||| |||||
Sbjct 801 AAAGAAATGGATGGTGTTACCTAAAATGCCCTGTGACGAGTGCTTCAACCACGCGGATAA 860
Query 396 AGAGTCTTTGGCTGTAGATGACGAGCTTTTGGTTTTCGGGAGAGAGTTGTTTCAGTTTGT 455
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 861 AGAGTCTTTGGCTGTAGATGACGAGCTTTTGGTCTTCGGGAGAGAGTTGTTTCAGTTTGC 920
Query 456 GATTTGGAAATACAGTTTGAGGTCTCGGTGTTGGGTCAAATGTGAAGGAATGCATCGTCC 515
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 921 GATTTGGAAATACAGTTTGAGGTCTCGGTGTTGGGTCAAATGCGAAGGAATGCATCGTCC 980
Query 516 TCGCTGCTTGTTTGCATCCGGAAGCCTCGGTGGAATTGCTATAGTTGCGGGAGGGACTGA 575
|||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||
Sbjct 981 TCGCTGCTTGTTTGCATCGGGAAGCCTCGGTGGGATTGCTATAGTTGCGGGAGGAACTGA 1040
Query 576 TATGAATGGGAATATATTAGCATCAGCTGAGCTTTATGATTCTTCGTCAGGGAGATGGGA 635
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1041 TATGAATGGGAATATACTAGCATCAGCTGAGCTTTATGATTCTTCGTCAGGGAGATGGGA 1100
Query 636 AATGCTTCCCAATATGCATTCCCCTCGAAGACTATGCTCGGGGTTTTTCATGGACGGGAA 695
|||||||||||||||||||| |||||||||||||||||||| ||||||||||| || ||
Sbjct 1101 GATGCTTCCCAATATGCATTCACCTCGAAGACTATGCTCGGGTTTTTTCATGGATGGTAA 1160
Query 696 ATTCTATGTGATTGGAGGCATGTCGAGCCCGAATGTATCGGTTACTTTTGGGGAGGAATT 755
|| |||||||||||||||||||||||||| |||||||| || |||||||| ||||| ||
Sbjct 1161 GTTTTATGTGATTGGAGGCATGTCGAGCCCTAATGTATCAGTCACTTTTGGAGAGGAGTT 1220
Query 756 TGATCTGGAAACAAGGAAGTGGAGGAAGATAGAAGGAATGTATCCAAATGTGAACCGAGC 815
|||||| || |||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1221 TGATCTTGAGACAAGGAAATGGAGGAAGATAGAAGGAATGTATCCGAATGTGAACCGAGC 1280
Query 816 AGCACAGGCTCCACCTCTTGTTGTAGTGGTTAACAACGAGCTATTCACGCTCGAGTACTC 875
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1281 AGCACAGGCTCCACCACTTGTTGTAGTGGTTAACAACGAGCTATTCACGCTTGAGTACTC 1340
Query 876 AACCAATATGGTGAAGAAGTATGATAAGGTGAAGAACAAATGGGAAGTGATGGGAAGGTT 935
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1341 AACCAATATGGTTAAGAAGTATGATAAGGTGAAGAACAAATGGGAAGTGATGGGAAGGTT 1400
Query 936 ACCGCCGATGGTGGACTCATCAAACGGTTGGGGATTGGCGTTTAAACCGTGCGGGGACCA 995
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||
Sbjct 1401 ACCGCCGATGGTGGACTCGTCAAACGGTTGGGGACTGGCGTTTAAACCGTGCGGGGATCA 1460
Query 996 ATTGTTGGTGTTTTGTGGGCAACGAGGTCCTCACGGTGAGGGCATAGTGGTGAATTCTTG 1055
||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||
Sbjct 1461 ATTGTTGGTGTTTTGTGGGCAACGAGGTCCTCATGGCGAGGGCATTGTGGTGAATTCTTG 1520
Query 1056 GTGTCCGAAATCAGGAGCTAAAGATGGAAACTTGGATTGGAAAGTGCTTGGAGTTAAAGA 1115
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1521 GTGTCCGAAATCGGGAGCTAAAGATGGAAACTTGGATTGGAAAGTGCTTGGAGTTAAAGA 1580
Query 1116 AAATGTTGGTGTGTTTGTGTATAACTGCGCAGTGATGGGTTGTTAA 1161
||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1581 GAATGTTGGTGTGTTTGTGTATAACTGCGCAGTGATGGGTTGCTAA 1626
Score = 86.1 bits (46), Expect = 7e-16
Identities = 48/49 (98%), Gaps = 0/49 (0%)
Strand=Plus/Plus
Query 1162 TCTTCTTCTTTTCTATTGACTGGTCTTTTGTTTTTGCTATTGGGATTAT 1210
|||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1651 TCTTCTTCTTCTCTATTGACTGGTCTTTTGTTTTTGCTATTGGGATTAT 1699
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59437445280
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5