BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg496210

Length=240
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G60615.1 | Symbols:  | Defensin-like (DEFL) family protein |...   377    2e-104


> AT5G60615.1 | Symbols:  | Defensin-like (DEFL) family protein 
| chr5:24365953-24366319 REVERSE LENGTH=240
Length=240

 Score =  377 bits (204),  Expect = 2e-104
 Identities = 229/241 (95%), Gaps = 2/241 (1%)
 Strand=Plus/Plus

Query  1    ATGGCTTCATCAAGATTTCAACTTGTTGCTCTTCTCGTCATCTTCTCTCTCGTTATTAGT  60
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  1    ATGGCTTCATCAAGATTTCAACTTGTTGCTCTTCTCGTCGTCTTCTCTCTCGTTATTAGT  60

Query  61   ATTACTGCCCAA-TCCGCAGAAAAAGAAGTAATGGACGGACCATGCCGCTTAAGAGGAAC  119
            ||||||| | || |||| ||| ||||| ||||||||||||||||||||||||||||||||
Sbjct  61   ATTACTG-CAAATTCCGTAGAGAAAGACGTAATGGACGGACCATGCCGCTTAAGAGGAAC  119

Query  120  GTGCAACAACGACAGCGACTGCGACAAACATTGTCACAGGAGCACCGACGCTACACCCAT  179
            ||||||||||||| ||||||||||||| |||||||||||||||||||||||| || ||||
Sbjct  120  GTGCAACAACGACGGCGACTGCGACAAGCATTGTCACAGGAGCACCGACGCTGCAGCCAT  179

Query  180  GGACGGTCACTGCCTCTTCGACAAACCCACCGGTCCTGTTTGTTGCTGCTTATTTGATTA  239
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  180  GGACGGCCACTGCCTCTTCGACAAACCCACCGGTCCTGTTTGTTGCTGCTTATTTGATTA  239

Query  240  A  240
            |
Sbjct  240  A  240



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10857833784


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5