BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496212
Length=1974
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60640.1 | Symbols: ATPDIL1-4, PDI2, ATPDI2, PDIL1-4 | PDI-l... 3038 0.0
> AT5G60640.1 | Symbols: ATPDIL1-4, PDI2, ATPDI2, PDIL1-4 | PDI-like
1-4 | chr5:24371007-24374038 REVERSE LENGTH=1973
Length=1973
Score = 3038 bits (1645), Expect = 0.0
Identities = 1846/1943 (95%), Gaps = 14/1943 (1%)
Strand=Plus/Plus
Query 1 CACACTAAAATGGCGTTCCGCGTTTTGCTCCTCTTCTCACTCACCGCACTTCTCATCTTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 37 CACACTAAAATGGCGTTCCGCGTTTTGCTCCTCTTCTCACTCACCGCACTTCTCATCTTC 96
Query 61 TCCGCCGTTTCTCCTTCTTTTGCCACCTCTTCCTCCGACGACGTCGACGATGAGGATCTC 120
|||||||||||||||||||| ||| | ||||||||||||||||| |||||||||||||||
Sbjct 97 TCCGCCGTTTCTCCTTCTTTCGCCGCTTCTTCCTCCGACGACGTTGACGATGAGGATCTC 156
Query 121 AGTTTCCTCGAAGATCTCAAAGAAGACGACGTTCCCGGCGCTGACTCACTCTCCTCCTCA 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 157 AGCTTCCTCGAAGATCTCAAAGAAGACGACGTTCCCGGCGCTGACTCACTCTCTTCCTCA 216
Query 181 ACTGGACTTGACGAATTCGAAGGAGGTGAAGACGAAGATCCCGATATGTACAACGACGAT 240
|||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 217 ACTGGATTTGACGAATTCGAAGGAGGAGAAGAAGAAGATCCCGATATGTACAACGACGAT 276
Query 241 GACGACGAAGAAGGAGATTTCTCCGATCTGGGTAATCCAGATTCCGATCCGCTCCCGACG 300
||||| |||||||||||||| |||||||| |||||||| |||||||||||| | ||||||
Sbjct 277 GACGATGAAGAAGGAGATTTTTCCGATCTAGGTAATCCGGATTCCGATCCGTTACCGACG 336
Query 301 CCGGAAATTGATGAGAAAGACGTTGTTGTTATCAAGGAGCGTAACTTCACTGACGTGATT 360
||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 337 CCGGAGATTGATGAGAAAGACGTTGTGGTTATCAAGGAGCGTAACTTCACTGATGTGATT 396
Query 361 GAGAATAATCAATACGTTTTGGTTGAGTTCTATGCGCCGTGGTGTGGTCATTGTCAGTCT 420
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 397 GAGAATAATCAATACGTTTTGGTTGAGTTTTATGCTCCGTGGTGTGGTCATTGTCAGTCT 456
Query 421 CTTGCTCCTGAGTATGCTGCTGCTGCGACGGAGCTTAAGGACGATGGTGTTGTTTTGGCT 480
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 457 CTTGCTCCTGAGTATGCTGCTGCTGCCACGGAGCTTAAGGAAGATGGTGTTGTTTTGGCT 516
Query 481 AAAATCGATGCGACGGAGGAGAATGAACTAGCTCAGGAGTATAGTGTTCAGGGATTCCCG 540
|| || |||||||||||||||||||| |||||||||||||| |||||||||| || |||
Sbjct 517 AAGATTGATGCGACGGAGGAGAATGAGTTAGCTCAGGAGTATCGTGTTCAGGGCTTTCCG 576
Query 541 ACGATTATTTTCTTCGTTGATGGTGAACACAAGCCTTACACTGGAGGAAGGACTAAGGAA 600
||| || ||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 577 ACGCTTCTTTTCTTCGTTGATGGTGAGCACAAGCCTTACACTGGAGGAAGGACTAAAGAA 636
Query 601 ACAATCGTGACATGGGTGAAGAAGAAGATTGGTCCTGGTGTGTATAATCTAACTACATTA 660
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 637 ACAATTGTGACATGGGTGAAGAAGAAGATTGGTCCTGGTGTGTATAATCTAACTACATTA 696
Query 661 GATGATGCTGAGAAAGTGTTGACTTCTGGGAACAAAGTCGTTTTGGGATACTTGAACTCC 720
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 697 GATGATGCTGAGAAAGTGTTGACTTCTGGGAACAAAGTTGTTTTGGGATACTTGAACTCC 756
Query 721 TTGGTGGGCGTTGAGCACGATCAACTTGCTGCTACTTCCAAAGTTGAAGACGATGTGAAC 780
|||||||| |||||||||||||| ||| |||| ||||||||| ||||||||||||||||
Sbjct 757 TTGGTGGGTGTTGAGCACGATCAGCTTAATGCTGCTTCCAAAGCTGAAGACGATGTGAAC 816
Query 781 TTCTATCAAACTGTGAATCCTGATGTTGCCAAGATGTTTCACATTGATCCGGAGTCTAAA 840
|| |||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 817 TTTTATCAAACAGTGAATCCTGATGTTGCAAAGATGTTTCACCTTGATCCGGAGTCTAAA 876
Query 841 AGGCCTGCTCTTGTCCTAGTTAAGAGGGAAGAGGAGAAGATTAGCCATTATGATGGGGAA 900
||||||||||||||||||||||||| |||||||||||| |||||||||| |||||| |||
Sbjct 877 AGGCCTGCTCTTGTCCTAGTTAAGAAGGAAGAGGAGAAAATTAGCCATTTTGATGGAGAA 936
Query 901 TTTGTTAAGTCTGCTTTAGTTAGTTTTGTGTCTGCCAACAAGCTTGCTTTGGTCTCTGTT 960
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 937 TTTGTTAAGTCTGCTCTAGTTAGTTTTGTGTCTGCCAACAAGCTTGCTTTGGTCTCTGTT 996
Query 961 TTCACCAGAGAGACTGCACCAGAAATTTTTGAGAGTGCAATCAAGAAACAGTTGTTGTTG 1020
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 997 TTCACCAGAGAGACTGCTCCGGAAATTTTTGAGAGTGCAATCAAGAAACAGTTGTTGTTG 1056
Query 1021 TTTGCAACCCAAAATGACTCTGAAAAGGTTCTTCCGGAATTTCAAGAAGCAGCGAAATCA 1080
|||| |||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1057 TTTGTAACCAAAAATGAATCTGAAAAGGTTCTTACGGAATTTCAAGAAGCAGCGAAATCA 1116
Query 1081 TTCAAAGGAAAGCTCATCTTTGTATCTGTGGATCTGGATAATGAGGATTATGGGAAACCA 1140
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1117 TTCAAAGGAAAGCTCATCTTTGTATCTGTGGATCTGGATAATGAGGATTATGGGAAGCCA 1176
Query 1141 GTCGCTGAATACTTTGGTGTGTCTGGAAATGGTCCTAAACTTATTG-CTTACACAGGGAA 1199
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1177 GTCGCTGAATACTTTGGTGTGTCTGGAAATGGTCCTAAACTTATTGGCT-ACACAGGGAA 1235
Query 1200 TGAAGACCCTAAAAAATACTTTTTCGATGGCGAGATCAAGTCAGATAAAATTAAGATATT 1259
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1236 TGAAGACCCTAAAAAATACTTTTTCGATGGCGAGATCCAGTCAGATAAAATTAAGATATT 1295
Query 1260 TGGGGAGGATTTCCTGAACGACAAGTTAAAGCCTTTCTATAAGTCAGACCCCATTCCTGA 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1296 TGGGGAGGATTTCCTGAACGACAAGTTAAAGCCTTTCTATAAGTCAGACCCCATTCCTGA 1355
Query 1320 AAAGAACGATGGAGATGTGAAAATAGTGGTTGGAGATAACTTTGATGAAATTGTTCTGGA 1379
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1356 AAAGAACGATGAAGATGTGAAAATAGTGGTTGGAGATAACTTTGATGAAATTGTTCTGGA 1415
Query 1380 CGATTCTAAAGATGTGCTTCTCGAGGTCTATGCACCATGGTGTGGCCATTGCCAAGCCCT 1439
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1416 CGATTCTAAAGATGTGCTTCTCGAGGTCTACGCACCATGGTGTGGCCATTGCCAAGCCCT 1475
Query 1440 TGAGCCAATGTATAACAAACTTGCCAAGCATTTACGAAGTATTGATTCTCTCGTCATAGC 1499
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1476 TGAGCCAATGTATAACAAACTTGCCAAGCATTTACGAAGTATTGATTCTCTCGTCATAAC 1535
Query 1500 CAAGATGGATGGAACAACCAACGAACATCCCAAGGCAAAGGCTGAGGGGTTCCCTACCAT 1559
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1536 CAAGATGGATGGAACAACCAATGAACATCCCAAGGCAAAGGCTGAGGGGTTCCCTACCAT 1595
Query 1560 TCTCTTCTTCCCTGCGGGCAACAAGACTTCAGAGCCGATAACTGTAGATACAGACCGCAC 1619
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1596 TCTCTTCTTCCCTGCGGGCAACAAGACTTCAGAGCCGATTACTGTAGATACAGACCGCAC 1655
Query 1620 TGTGGTTGCATTTTACAAGTTTTTAAGGAAACACGCAACGATCCCATTCAAACTGGAGAA 1679
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1656 TGTGGTTGCATTTTACAAGTTCTTAAGGAAACACGCAACGATCCCATTCAAACTGGAGAA 1715
Query 1680 ACCTGCATCAACCGAATCTCCTAAAACTGCCGAGAGCACACCTAAAGTAGAAACTACCGA 1739
|||||||||||||||||| ||||||||||| ||| |||||| |||||||||||||||||
Sbjct 1716 ACCTGCATCAACCGAATCACCTAAAACTGCAGAGTCCACACCAAAAGTAGAAACTACCGA 1775
Query 1740 GACCAAAGAATCACCTGATAGCACGACAAAGAGTAGCCAAAGTGACTCGAAGGACGAATT 1799
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1776 GACCAAAGAATCACCCGATAGCACGACAAAGAGTAGCCAAAGTGACTCGAAGGACGAATT 1835
Query 1800 GTGATCAGAAGTTAAGAA-ACGGGTAT-T-TTACACGTCTCCTTAAGTT---ATATGTAT 1853
|||||||||| ||| | ||| | ||||| ||||||||||||| ||||||||
Sbjct 1836 GTGATCAGAA---AAGGGTATAA-TATATATTACATGTCTCCTTAAGTTGTTATATGTAT 1891
Query 1854 GATCAGAATTGTGTCATTATGAGTTTGGACTAGAGAAAGATGGAGA-TAAAAGTAATTTT 1912
|||||||||||| ||| |||||||||||||||| |||||||| || | |||||||||||
Sbjct 1892 GATCAGAATTGTCACATCATGAGTTTGGACTAGATAAAGATGG-GAATTAAAGTAATTTT 1950
Query 1913 AGTTATGAGTAAGACAATTTCTT 1935
|||| |||| |||||||||||||
Sbjct 1951 AGTTTTGAGAAAGACAATTTCTT 1973
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97790661660
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5