BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg496214 Length=515 Score E Sequences producing significant alignments: (Bits) Value AT5G60650.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 676 0.0 > AT5G60650.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G28410.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:24374192-24374798 REVERSE LENGTH=607 Length=607 Score = 676 bits (366), Expect = 0.0 Identities = 446/483 (92%), Gaps = 11/483 (2%) Strand=Plus/Plus Query 1 AAACAACAACAACATGACATACCTAACTCATTCTTTGTTCTTCTTTTTCTCTTGCTTATC 60 ||||||||||| |||||||||||||||||| |||||| ||||||| |||||||||||||| Sbjct 38 AAACAACAACATCATGACATACCTAACTCACTCTTTGCTCTTCTTCTTCTCTTGCTTATC 97 Query 61 TATGCTTCTTTGCGTCTCCATTGCTGGAAGCAGACCTGTTCACGGTCCAGCTTATACAAA 120 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 98 TATGCTTCTTTGCGTCTCCATTGCAGGAAGCAGACCTGTTCACGGTCCAGCTTATACAAA 157 Query 121 TCCGTCTGCTTTCTCTCCAGAAGCTTACGATTTCTTTCACCCAAAATCATCACTCTCTGA 180 || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 158 CCCATCTGCTTTCTCTCCACAAGCTTACGATTTCTTTCACCCAAAATCATCACTCTCTGA 217 Query 181 TCACAATAATCCACCAAAAAACTCACCTTCTTCGC---CA---TCACCTTCACCTTCAAA 234 ||||||||||||||||||| ||| |||||| ||| || ||||||||||||||||| Sbjct 218 TCACAATAATCCACCAAAATCCTCGCCTTCTCCGCTTTCACTTTCACCTTCACCTTCAAA 277 Query 235 GACATCTATTGTAGAACCAGATTCACAAGGAAGTAAAGTTTCATCAGACGAACACACAAC 294 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 278 AACATCTATTGTAGAACCAGATTCACAAGGAAGTAAAGTTTCATCAGACGAACACACAAC 337 Query 295 AAGTGAGAGTAGTCGCAGAGAAGAAGAAGGACGAGGAGAAACCATTGGAGTAGTATTAGG 354 |||||||||| | || ||| | ||||||||||| ||||||||||| |||||||| ||||| Sbjct 338 AAGTGAGAGTCGACG-AGA-A-GAAGAAGGACGTGGAGAAACCATCGGAGTAGTGTTAGG 394 Query 355 CCTTTCTTTCGTCGCGTTTCTCTCATTAGGAATCTACTTTGTGATCAAGAAACAACGTGC 414 ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 395 ACTTTCTTTCATCGCATTTCTCTCATTAGGAATCTACTTTGTGATCAAGAAACAACGTGC 454 Query 415 TAATATGATTCGCACTATTGTCACTCACTCTGATGCTTGAAT-TAACCAAAAATATACTT 473 |||||| || ||||||||||||||||||||||| |||| ||| || ||||||| |||||| Sbjct 455 TAATATCATCCGCACTATTGTCACTCACTCTGACGCTTAAATATA-CCAAAAACATACTT 513 Query 474 CTT 476 ||| Sbjct 514 CTT 516 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24614732030 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5