BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496214
Length=515
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60650.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 676 0.0
> AT5G60650.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G28410.1); Has
1807 Blast hits to 1807 proteins in 277 species: Archae -
0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses
- 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:24374192-24374798
REVERSE LENGTH=607
Length=607
Score = 676 bits (366), Expect = 0.0
Identities = 446/483 (92%), Gaps = 11/483 (2%)
Strand=Plus/Plus
Query 1 AAACAACAACAACATGACATACCTAACTCATTCTTTGTTCTTCTTTTTCTCTTGCTTATC 60
||||||||||| |||||||||||||||||| |||||| ||||||| ||||||||||||||
Sbjct 38 AAACAACAACATCATGACATACCTAACTCACTCTTTGCTCTTCTTCTTCTCTTGCTTATC 97
Query 61 TATGCTTCTTTGCGTCTCCATTGCTGGAAGCAGACCTGTTCACGGTCCAGCTTATACAAA 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 98 TATGCTTCTTTGCGTCTCCATTGCAGGAAGCAGACCTGTTCACGGTCCAGCTTATACAAA 157
Query 121 TCCGTCTGCTTTCTCTCCAGAAGCTTACGATTTCTTTCACCCAAAATCATCACTCTCTGA 180
|| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 158 CCCATCTGCTTTCTCTCCACAAGCTTACGATTTCTTTCACCCAAAATCATCACTCTCTGA 217
Query 181 TCACAATAATCCACCAAAAAACTCACCTTCTTCGC---CA---TCACCTTCACCTTCAAA 234
||||||||||||||||||| ||| |||||| ||| || |||||||||||||||||
Sbjct 218 TCACAATAATCCACCAAAATCCTCGCCTTCTCCGCTTTCACTTTCACCTTCACCTTCAAA 277
Query 235 GACATCTATTGTAGAACCAGATTCACAAGGAAGTAAAGTTTCATCAGACGAACACACAAC 294
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 278 AACATCTATTGTAGAACCAGATTCACAAGGAAGTAAAGTTTCATCAGACGAACACACAAC 337
Query 295 AAGTGAGAGTAGTCGCAGAGAAGAAGAAGGACGAGGAGAAACCATTGGAGTAGTATTAGG 354
|||||||||| | || ||| | ||||||||||| ||||||||||| |||||||| |||||
Sbjct 338 AAGTGAGAGTCGACG-AGA-A-GAAGAAGGACGTGGAGAAACCATCGGAGTAGTGTTAGG 394
Query 355 CCTTTCTTTCGTCGCGTTTCTCTCATTAGGAATCTACTTTGTGATCAAGAAACAACGTGC 414
||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 395 ACTTTCTTTCATCGCATTTCTCTCATTAGGAATCTACTTTGTGATCAAGAAACAACGTGC 454
Query 415 TAATATGATTCGCACTATTGTCACTCACTCTGATGCTTGAAT-TAACCAAAAATATACTT 473
|||||| || ||||||||||||||||||||||| |||| ||| || ||||||| ||||||
Sbjct 455 TAATATCATCCGCACTATTGTCACTCACTCTGACGCTTAAATATA-CCAAAAACATACTT 513
Query 474 CTT 476
|||
Sbjct 514 CTT 516
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24614732030
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5