BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496216
Length=631
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60670.1 | Symbols: | Ribosomal protein L11 family protein ... 880 0.0
> AT5G60670.1 | Symbols: | Ribosomal protein L11 family protein
| chr5:24380910-24381593 REVERSE LENGTH=684
Length=684
Score = 880 bits (476), Expect = 0.0
Identities = 608/665 (91%), Gaps = 36/665 (5%)
Strand=Plus/Plus
Query 1 GAGAAGAA-AAGGAGAAAATGCCGCCGAAATTGGATCCATCTCAAATCGTCGACGTCTAC 59
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 11 GAGAAGAATCA-GAGAAAATGCCGCCGAAATTGGATCCATCTCAAATCGTCGACGTCTAC 69
Query 60 GTCCGAGTCACCGGAGGTGAGGTCGGAGCAGCGTCATCACTCGCTCCAAAGATCGGTCCA 119
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 70 GTCCGAGTCACCGGAGGTGAGGTCGGAGCAGCGTCTTCACTCGCTCCAAAGATCGGTCCA 129
Query 120 CTCGGTCTCGCACCGAAA-AAGATCGGAGAAGACATCGCCAAAGAGACAGCAAAAGAATG 178
|||||||| ||||| ||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 130 CTCGGTCTGGCACC-AAAGAAGATCGGAGAAGACATCGCCAAAGAGACAGCGAAAGAATG 188
Query 179 GAAAGGTCTTAGAGTCACCGTGAAGCTCACGGTTCAGAATCGTCAAGCTAAGGTCACAGT 238
|||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 189 GAAAGGTCTTCGAGTCACCGTGAAGCTTACGGTACAGAATCGTCAAGCTAAGGTCACAGT 248
Query 239 GGTTCCATCCGCAGCGGCTCTAGTCATCAAAGCCCTCAAGGAGCCAGAGAGAGATCGGAA 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 249 GGTTCCATCCGCAGCGGCTCTAGTCATCAAAGCCCTCAAGGAGCCAGAGAGAGATAGGAA 308
Query 299 GAAAGTGAAGAACATCAAACATAATGGGAACATTTCGTTTGATGATGTGATTGAGATTGC 358
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 309 GAAAGTGAAGAACATCAAACATAATGGCAACATTTCGTTTGATGATGTGATTGAGATTGC 368
Query 359 GAAGATAATGCGTCCTAGATCTATGG--A-G-A-TT---T-------TG--GGA-ACTT- 399
||||||||||||||||||||||| | | | | || | || ||| | ||
Sbjct 369 TAAGATAATGCGTCCTAGATCTATCGCTAAGGAATTGAGTGGAACAGTGAAGGAGATTTT 428
Query 400 -G----T-GT--CTCTGTTGGTTGCACTGTTGATGGTAAAGACCCTAAGGATCTTCAGGA 451
| | || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 AGGAACTTGTGTCTCTGTTGGTTGCACTGTTGATGGTAAAGACCCTAAGGATCTTCAGGA 488
Query 452 AGAAATTAACAGTGGTGACATTGATATTCCTAACGAGTGATAAAGGTTTT-ACTTTTGAG 510
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 489 AGAAATTAACAGTGGTGACATTGATATTCCTAACGAGTGATAAAGGTTTTTACTTTTGAG 548
Query 511 TTCTCTATCGtttt-tttG--GTATTTGATTTTGAGGATTTGGTATTAGTA-TACTATAT 566
|||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 549 TTCTCTATCGTTTTATTTTTTGTATTTGATTTTGAGGATTTGGTATTAGTAATACTATAT 608
Query 567 TTTGGAAGTTGAGGATTGTTGGCTTTTGCAAATTTGAATCCTCTCTTGGGATCAATTAGA 626
|| |||||||||| ||||||||||||||| ||||||||||| ||||||||| ||| | |
Sbjct 609 TTCGGAAGTTGAGAATTGTTGGCTTTTGCCCATTTGAATCCTTTCTTGGGATTAATCAAA 668
Query 627 ATGTT 631
|||||
Sbjct 669 ATGTT 673
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30441893082
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5